RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 C16orf71Q8IYS4 520 aaPredicted RBP5.56□□□□□ -1.52
USH2A-202ENST00000366942 PDS5BQ9NTI5 1447 aa5.55□□□□□ -1.52
USH2A-202ENST00000366942 KANK1Q14678 1352 aa5.55□□□□□ -1.52
USH2A-202ENST00000366942 RB1CC1Q8TDY2 1594 aa5.54□□□□□ -1.52
USH2A-202ENST00000366942 CFAP44Q96MT7 982 aa5.54□□□□□ -1.52
USH2A-202ENST00000366942 CANXP27824 592 aaKnown RBP5.54□□□□□ -1.52
USH2A-202ENST00000366942 BEGAINQ9BUH8 593 aa5.54□□□□□ -1.52
USH2A-202ENST00000366942 SRPK2P78362 688 aaKnown RBP5.54□□□□□ -1.52
USH2A-202ENST00000366942 POGKQ9P215 609 aa5.54□□□□□ -1.52
USH2A-202ENST00000366942 GTF2E1P29083 439 aaPredicted RBP5.52□□□□□ -1.53
USH2A-202ENST00000366942 EVA1CP58658 441 aa5.51□□□□□ -1.53
USH2A-202ENST00000366942 NEUROD2Q15784 382 aa5.51□□□□□ -1.53
USH2A-202ENST00000366942 CARMIL2Q6F5E8 1435 aa5.51□□□□□ -1.53
USH2A-202ENST00000366942 ATF3P18847 181 aa5.5□□□□□ -1.53
USH2A-202ENST00000366942 TOM1O60784 492 aa5.49□□□□□ -1.53
USH2A-202ENST00000366942 IL27Q8NEV9 243 aa5.49□□□□□ -1.53
USH2A-202ENST00000366942 POGZQ7Z3K3 1410 aa5.49□□□□□ -1.53
USH2A-202ENST00000366942 NUTM2BA6NNL0 878 aaPredicted RBP5.49□□□□□ -1.53
USH2A-202ENST00000366942 NUTM2EB1AL46 878 aaPredicted RBP5.49□□□□□ -1.53
USH2A-202ENST00000366942 NUTM2DQ5VT03 806 aaPredicted RBP5.49□□□□□ -1.53
USH2A-202ENST00000366942 NUTM2AQ8IVF1 878 aaPredicted RBP5.49□□□□□ -1.53
USH2A-202ENST00000366942 NBPF8Q3BBV2 869 aa5.48□□□□□ -1.53
USH2A-202ENST00000366942 CDCA8Q53HL2 280 aa5.48□□□□□ -1.53
USH2A-202ENST00000366942 NBPF14Q5TI25 921 aa5.48□□□□□ -1.53
USH2A-202ENST00000366942 CCAR1Q8IX12 1150 aaKnown RBP5.48□□□□□ -1.53
USH2A-202ENST00000366942 CNKSR2Q8WXI2 1034 aa5.48□□□□□ -1.53
USH2A-202ENST00000366942 ZEB1P37275 1124 aaPredicted RBP5.47□□□□□ -1.53
USH2A-202ENST00000366942 FAM69CQ0P6D2 419 aa5.47□□□□□ -1.53
USH2A-202ENST00000366942 EFCAB2Q5VUJ9 269 aa5.47□□□□□ -1.53
USH2A-202ENST00000366942 PAXIP1Q6ZW49 1069 aaPredicted RBP5.47□□□□□ -1.53
USH2A-202ENST00000366942 CTDP1Q9Y5B0 961 aaPredicted RBP5.47□□□□□ -1.53
USH2A-202ENST00000366942 ANP32EQ9BTT0 268 aa5.46□□□□□ -1.53
USH2A-202ENST00000366942 P3H3Q8IVL6 736 aa5.46□□□□□ -1.53
USH2A-202ENST00000366942 PCGF6Q9BYE7 350 aa5.46□□□□□ -1.54
USH2A-202ENST00000366942 ISY1Q9ULR0 285 aaKnown RBP5.46□□□□□ -1.54
USH2A-202ENST00000366942 CFAP53Q96M91 514 aa5.45□□□□□ -1.54
USH2A-202ENST00000366942 YTHDC1Q96MU7 727 aaKnown RBP5.45□□□□□ -1.54
USH2A-202ENST00000366942 NGLY1Q96IV0 654 aa5.44□□□□□ -1.54
USH2A-202ENST00000366942 CNGB1Q14028 1251 aaPredicted RBP5.44□□□□□ -1.54
USH2A-202ENST00000366942 CECR2Q9BXF3 1484 aa5.44□□□□□ -1.54
USH2A-202ENST00000366942 SSFA2P28290 1259 aa5.43□□□□□ -1.54
USH2A-202ENST00000366942 MYH16Q9H6N6 1097 aa5.43□□□□□ -1.54
USH2A-202ENST00000366942 HDAC5Q9UQL6 1122 aa5.43□□□□□ -1.54
USH2A-202ENST00000366942 RSF1Q96T23 1441 aaPredicted RBP5.43□□□□□ -1.54
USH2A-202ENST00000366942 PNNQ9H307 717 aaKnown RBP5.43□□□□□ -1.54
USH2A-202ENST00000366942 PIP4K2BP78356 416 aa5.42□□□□□ -1.54
USH2A-202ENST00000366942 PAK3O75914 559 aaPredicted RBP5.42□□□□□ -1.54
USH2A-202ENST00000366942 GGT6Q6P531 493 aa5.41□□□□□ -1.54
USH2A-202ENST00000366942 TRIM34Q9BYJ4 488 aa5.41□□□□□ -1.54
USH2A-202ENST00000366942 UBAP1LF5GYI3 381 aa5.41□□□□□ -1.54
USH2A-202ENST00000366942 SCRIBQ14160 1630 aa5.41□□□□□ -1.54
USH2A-202ENST00000366942 HSP90B1P14625 803 aaKnown RBP5.41□□□□□ -1.54
USH2A-202ENST00000366942 CFDP1Q9UEE9 299 aaPredicted RBP5.41□□□□□ -1.54
USH2A-202ENST00000366942 EIF5BO60841 1220 aaKnown RBP5.41□□□□□ -1.54
USH2A-202ENST00000366942 NUDCQ9Y266 331 aa5.41□□□□□ -1.54
USH2A-202ENST00000366942 POLD1P28340 1107 aa5.4□□□□□ -1.54
USH2A-202ENST00000366942 PDE3BQ13370 1112 aa5.4□□□□□ -1.55
USH2A-202ENST00000366942 MTUS2Q5JR59 1369 aa5.4□□□□□ -1.55
USH2A-202ENST00000366942 ZNF316A6NFI3 1004 aaPredicted RBP5.39□□□□□ -1.55
USH2A-202ENST00000366942 PSME1Q06323 249 aa5.39□□□□□ -1.55
USH2A-202ENST00000366942 CLIP1P30622 1438 aa5.39□□□□□ -1.55
USH2A-202ENST00000366942 CLSTN1O94985 981 aa5.39□□□□□ -1.55
USH2A-202ENST00000366942 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.39□□□□□ -1.55
USH2A-202ENST00000366942 ARHGEF6Q15052 776 aa5.39□□□□□ -1.55
USH2A-202ENST00000366942 NGDNQ8NEJ9 315 aaKnown RBP5.39□□□□□ -1.55
USH2A-202ENST00000366942 NOL10Q9BSC4 688 aaKnown RBP5.38□□□□□ -1.55
USH2A-202ENST00000366942 AIDAQ96BJ3 306 aa5.38□□□□□ -1.55
USH2A-202ENST00000366942 PRM3Q9NNZ6 103 aa5.38□□□□□ -1.55
USH2A-202ENST00000366942 WWC1Q8IX03 1113 aa5.38□□□□□ -1.55
USH2A-202ENST00000366942 RFX1P22670 979 aa5.37□□□□□ -1.55
USH2A-202ENST00000366942 TMC1Q8TDI8 760 aa5.37□□□□□ -1.55
USH2A-202ENST00000366942 BCL11AQ9H165 835 aa5.37□□□□□ -1.55
USH2A-202ENST00000366942 NCBP3Q53F19 620 aaKnown RBP5.37□□□□□ -1.55
USH2A-202ENST00000366942 THEMISQ8N1K5 641 aaPredicted RBP5.37□□□□□ -1.55
USH2A-202ENST00000366942 PROSER2Q86WR7 435 aaPredicted RBP5.37□□□□□ -1.55
USH2A-202ENST00000366942 CENPBP07199 599 aaPredicted RBP5.37□□□□□ -1.55
USH2A-202ENST00000366942 HNRNPMP52272 730 aaKnown RBP eCLIP5.37□□□□□ -1.55
USH2A-202ENST00000366942 CHMP4BQ9H444 224 aaKnown RBP5.36□□□□□ -1.55
USH2A-202ENST00000366942 TMEM87AQ8NBN3 555 aa5.36□□□□□ -1.55
USH2A-202ENST00000366942 ZRANB1Q9UGI0 708 aa5.36□□□□□ -1.55
USH2A-202ENST00000366942 FRAT2O75474 233 aaPredicted RBP5.36□□□□□ -1.55
USH2A-202ENST00000366942 TULP1O00294 542 aaPredicted RBP5.35□□□□□ -1.55
USH2A-202ENST00000366942 HDGFL2Q7Z4V5 671 aaPredicted RBP5.35□□□□□ -1.55
USH2A-202ENST00000366942 AMOTL1Q8IY63 956 aa5.35□□□□□ -1.55
USH2A-202ENST00000366942 SMC4Q9NTJ3 1288 aa5.35□□□□□ -1.55
USH2A-202ENST00000366942 ZNF330Q9Y3S2 320 aaPredicted RBP5.35□□□□□ -1.55
USH2A-202ENST00000366942 RSPH4AQ5TD94 716 aa5.35□□□□□ -1.55
USH2A-202ENST00000366942 ANKLE2Q86XL3 938 aa5.35□□□□□ -1.55
USH2A-202ENST00000366942 DDRGK1Q96HY6 314 aa5.35□□□□□ -1.55
USH2A-202ENST00000366942 RTF1Q92541 710 aaKnown RBP5.34□□□□□ -1.55
USH2A-202ENST00000366942 NOP2P46087 812 aaKnown RBP5.34□□□□□ -1.55
USH2A-202ENST00000366942 TAF7LQ5H9L4 462 aa5.34□□□□□ -1.55
USH2A-202ENST00000366942 TCEAL9Q9UHQ7 104 aa5.34□□□□□ -1.55
USH2A-202ENST00000366942 PPP4R2Q9NY27 417 aa5.34□□□□□ -1.55
USH2A-202ENST00000366942 WASHC2CQ9Y4E1 1318 aa5.34□□□□□ -1.56
USH2A-202ENST00000366942 WWC2Q6AWC2 1192 aa5.34□□□□□ -1.56
USH2A-202ENST00000366942 BAZ1BQ9UIG0 1483 aaKnown RBP5.34□□□□□ -1.56
USH2A-202ENST00000366942 RBM33Q96EV2 1170 aaKnown RBP5.33□□□□□ -1.56
USH2A-202ENST00000366942 BAG6P46379 1132 aa5.33□□□□□ -1.56
USH2A-202ENST00000366942 WDR43Q15061 677 aaKnown RBP eCLIP5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms