RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 PRG4Q92954 1404 aaPredicted RBP24.81■■□□□ 1.56
VPS29-201ENST00000360579 JPH4Q96JJ6 628 aa24.79■■□□□ 1.56
VPS29-201ENST00000360579 KIF13AQ9H1H9 1805 aa24.7■■□□□ 1.55
VPS29-201ENST00000360579 NPM1P06748 294 aaKnown RBP eCLIP24.7■■□□□ 1.54
VPS29-201ENST00000360579 RUSC2Q8N2Y8 1516 aa24.66■■□□□ 1.54
VPS29-201ENST00000360579 ABCC10Q5T3U5 1492 aa24.65■■□□□ 1.54
VPS29-201ENST00000360579 FAM69CQ0P6D2 419 aa24.65■■□□□ 1.54
VPS29-201ENST00000360579 MAPKBP1O60336 1514 aa24.63■■□□□ 1.53
VPS29-201ENST00000360579 KIAA0586Q9BVV6 1533 aa24.56■■□□□ 1.52
VPS29-201ENST00000360579 DIP2BQ9P265 1576 aa24.54■■□□□ 1.52
VPS29-201ENST00000360579 ADCY10Q96PN6 1610 aa24.53■■□□□ 1.52
VPS29-201ENST00000360579 IGF1RP08069 1367 aa24.49■■□□□ 1.51
VPS29-201ENST00000360579 KIF27Q86VH2 1401 aa24.49■■□□□ 1.51
VPS29-201ENST00000360579 CUL7Q14999 1698 aa24.46■■□□□ 1.51
VPS29-201ENST00000360579 KDM6BO15054 1643 aa24.43■■□□□ 1.5
VPS29-201ENST00000360579 PTPRGP23470 1445 aa24.4■■□□□ 1.5
VPS29-201ENST00000360579 CARMIL2Q6F5E8 1435 aa24.35■■□□□ 1.49
VPS29-201ENST00000360579 KDM4FA0A1W2PPD8 638 aa24.34■■□□□ 1.49
VPS29-201ENST00000360579 CARMIL1Q5VZK9 1371 aa24.33■■□□□ 1.49
VPS29-201ENST00000360579 TNIKQ9UKE5 1360 aa24.33■■□□□ 1.49
VPS29-201ENST00000360579 ABCC2Q92887 1545 aa24.31■■□□□ 1.48
VPS29-201ENST00000360579 TSPOAP1O95153 1857 aa24.3■■□□□ 1.48
VPS29-201ENST00000360579 FOXD1Q16676 465 aa24.3■■□□□ 1.48
VPS29-201ENST00000360579 PLB1Q6P1J6 1458 aa24.28■■□□□ 1.48
VPS29-201ENST00000360579 TTBK1Q5TCY1 1321 aaPredicted RBP24.28■■□□□ 1.48
VPS29-201ENST00000360579 ASXL2Q76L83 1435 aa24.25■■□□□ 1.47
VPS29-201ENST00000360579 GLI2P10070 1586 aa24.24■■□□□ 1.47
VPS29-201ENST00000360579 IQGAP2Q13576 1575 aa24.24■■□□□ 1.47
VPS29-201ENST00000360579 UHRF1BP1LA0JNW5 1464 aa24.23■■□□□ 1.47
VPS29-201ENST00000360579 UACAQ9BZF9 1416 aa24.2■■□□□ 1.46
VPS29-201ENST00000360579 DISP1Q96F81 1524 aa24.14■■□□□ 1.45
VPS29-201ENST00000360579 PPRC1Q5VV67 1664 aaKnown RBP24.12■■□□□ 1.45
VPS29-201ENST00000360579 KDM5BQ9UGL1 1544 aa24.11■■□□□ 1.45
VPS29-201ENST00000360579 EPRSP07814 1512 aaKnown RBP24.1■■□□□ 1.45
VPS29-201ENST00000360579 TEX14Q8IWB6 1497 aa24.09■■□□□ 1.45
VPS29-201ENST00000360579 UGGT2Q9NYU1 1516 aa24.08■■□□□ 1.45
VPS29-201ENST00000360579 ADGRL1O94910 1474 aa24.07■■□□□ 1.44
VPS29-201ENST00000360579 RAPGEF2Q9Y4G8 1499 aa24.07■■□□□ 1.44
VPS29-201ENST00000360579 MAP3K4Q9Y6R4 1608 aa24.05■■□□□ 1.44
VPS29-201ENST00000360579 COL17A1Q9UMD9 1497 aaPredicted RBP24.03■■□□□ 1.44
VPS29-201ENST00000360579 KIAA0556O60303 1618 aa24.01■■□□□ 1.43
VPS29-201ENST00000360579 ZCCHC11Q5TAX3 1644 aaKnown RBP24■■□□□ 1.43
VPS29-201ENST00000360579 ILDR1Q86SU0 546 aaPredicted RBP23.97■■□□□ 1.43
VPS29-201ENST00000360579 WDR7Q9Y4E6 1490 aa23.97■■□□□ 1.43
VPS29-201ENST00000360579 GOLGA3Q08378 1498 aa23.9■■□□□ 1.42
VPS29-201ENST00000360579 CD109Q6YHK3 1445 aa23.87■■□□□ 1.41
VPS29-201ENST00000360579 MAGI3Q5TCQ9 1506 aa23.87■■□□□ 1.41
VPS29-201ENST00000360579 HECW2Q9P2P5 1572 aa23.84■■□□□ 1.41
VPS29-201ENST00000360579 CFAP43Q8NDM7 1665 aa23.83■■□□□ 1.4
VPS29-201ENST00000360579 CTTNBP2Q8WZ74 1663 aa23.83■■□□□ 1.4
VPS29-201ENST00000360579 ABCA8O94911 1581 aa23.82■■□□□ 1.4
VPS29-201ENST00000360579 KCNH8Q96L42 1107 aa23.81■■□□□ 1.4
VPS29-201ENST00000360579 FAM9AQ8IZU1 332 aaPredicted RBP23.79■■□□□ 1.4
VPS29-201ENST00000360579 PRXQ9BXM0 1461 aa23.73■■□□□ 1.39
VPS29-201ENST00000360579 ARAP3Q8WWN8 1544 aa23.69■■□□□ 1.38
VPS29-201ENST00000360579 PHLDB1Q86UU1 1377 aa23.67■■□□□ 1.38
VPS29-201ENST00000360579 KIF21BO75037 1637 aa23.62■■□□□ 1.37
VPS29-201ENST00000360579 ATP10BO94823 1461 aa23.62■■□□□ 1.37
VPS29-201ENST00000360579 ARID3CA6NKF2 412 aa23.59■■□□□ 1.37
VPS29-201ENST00000360579 ABCA9Q8IUA7 1624 aa23.58■■□□□ 1.36
VPS29-201ENST00000360579 P3H3Q8IVL6 736 aa23.57■■□□□ 1.36
VPS29-201ENST00000360579 PLPPR3Q6T4P5 718 aa23.56■■□□□ 1.36
VPS29-201ENST00000360579 NEO1Q92859 1461 aa23.55■■□□□ 1.36
VPS29-201ENST00000360579 PTPRMP28827 1452 aa23.51■■□□□ 1.35
VPS29-201ENST00000360579 RAPGEF3O95398 923 aa23.51■■□□□ 1.35
VPS29-201ENST00000360579 SAMD9Q5K651 1589 aa23.5■■□□□ 1.35
VPS29-201ENST00000360579 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.5■■□□□ 1.35
VPS29-201ENST00000360579 HNRNPUL2Q1KMD3 747 aaKnown RBP23.5■■□□□ 1.35
VPS29-201ENST00000360579 ADAMTSL3P82987 1691 aa23.49■■□□□ 1.35
VPS29-201ENST00000360579 FBXO41Q8TF61 875 aa23.49■■□□□ 1.35
VPS29-201ENST00000360579 RAPGEF6Q8TEU7 1601 aa23.48■■□□□ 1.35
VPS29-201ENST00000360579 CSRNP3Q8WYN3 585 aa23.46■■□□□ 1.35
VPS29-201ENST00000360579 ARID4BQ4LE39 1312 aaPredicted RBP23.44■■□□□ 1.34
VPS29-201ENST00000360579 NUP153P49790 1475 aaKnown RBP23.41■■□□□ 1.34
VPS29-201ENST00000360579 BCORL1Q5H9F3 1711 aa23.4■■□□□ 1.34
VPS29-201ENST00000360579 FRMPD1Q5SYB0 1578 aa23.4■■□□□ 1.34
VPS29-201ENST00000360579 PLEKHD1A6NEE1 506 aa23.38■■□□□ 1.33
VPS29-201ENST00000360579 DENND4BO75064 1496 aaPredicted RBP23.36■■□□□ 1.33
VPS29-201ENST00000360579 PCF11O94913 1555 aaKnown RBP23.36■■□□□ 1.33
VPS29-201ENST00000360579 MADDQ8WXG6 1647 aa23.36■■□□□ 1.33
VPS29-201ENST00000360579 ARHGEF40Q8TER5 1519 aa23.35■■□□□ 1.33
VPS29-201ENST00000360579 EEA1Q15075 1411 aa23.34■■□□□ 1.33
VPS29-201ENST00000360579 FHOD3Q2V2M9 1422 aa23.33■■□□□ 1.32
VPS29-201ENST00000360579 AKNAQ7Z591 1439 aa23.33■■□□□ 1.32
VPS29-201ENST00000360579 LMTK3Q96Q04 1460 aa23.32■■□□□ 1.32
VPS29-201ENST00000360579 CFAP74Q9C0B2 1584 aa23.31■■□□□ 1.32
VPS29-201ENST00000360579 FANCAO15360 1455 aa23.31■■□□□ 1.32
VPS29-201ENST00000360579 POGZQ7Z3K3 1410 aa23.31■■□□□ 1.32
VPS29-201ENST00000360579 RANGAP1P46060 587 aaPredicted RBP23.3■■□□□ 1.32
VPS29-201ENST00000360579 RICTORQ6R327 1708 aa23.28■■□□□ 1.32
VPS29-201ENST00000360579 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.26■■□□□ 1.31
VPS29-201ENST00000360579 RIMS1Q86UR5 1692 aaKnown RBP23.25■■□□□ 1.31
VPS29-201ENST00000360579 ZMYM4Q5VZL5 1548 aa23.25■■□□□ 1.31
VPS29-201ENST00000360579 MAGI2Q86UL8 1455 aa23.24■■□□□ 1.31
VPS29-201ENST00000360579 EFCAB5A4FU69 1503 aa23.24■■□□□ 1.31
VPS29-201ENST00000360579 ZFYVE16Q7Z3T8 1539 aa23.23■■□□□ 1.31
VPS29-201ENST00000360579 TTC37Q6PGP7 1564 aa23.19■■□□□ 1.3
VPS29-201ENST00000360579 YEATS2Q9ULM3 1422 aa23.17■■□□□ 1.3
VPS29-201ENST00000360579 HSPA2P54652 639 aa23.17■■□□□ 1.3
VPS29-201ENST00000360579 PLCH2O75038 1416 aa23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms