RNA–Protein interactions for RNA: ENST00000358901.10

VCP-201, Transcript of valosin containing protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VCP, Length 4,370 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-201ENST00000358901 SUPT16HQ9Y5B9 1047 aaKnown RBP18.39■□□□□ 0.53
VCP-201ENST00000358901 UPF2Q9HAU5 1272 aaKnown RBP18.38■□□□□ 0.53
VCP-201ENST00000358901 CECR2Q9BXF3 1484 aa18.37■□□□□ 0.53
VCP-201ENST00000358901 WDR43Q15061 677 aaKnown RBP eCLIP18.36■□□□□ 0.53
VCP-201ENST00000358901 HSP90AA1P07900 732 aaKnown RBP18.35■□□□□ 0.53
VCP-201ENST00000358901 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.34■□□□□ 0.53
VCP-201ENST00000358901 RB1CC1Q8TDY2 1594 aa18.34■□□□□ 0.53
VCP-201ENST00000358901 SOGA1O94964 1423 aa18.33■□□□□ 0.52
VCP-201ENST00000358901 KIF27Q86VH2 1401 aa18.31■□□□□ 0.52
VCP-201ENST00000358901 CHMP7Q8WUX9 453 aaPredicted RBP18.28■□□□□ 0.52
VCP-201ENST00000358901 ANP32EQ9BTT0 268 aa18.28■□□□□ 0.52
VCP-201ENST00000358901 RGL3Q3MIN7 710 aa18.27■□□□□ 0.51
VCP-201ENST00000358901 STAG3Q9UJ98 1225 aa18.26■□□□□ 0.51
VCP-201ENST00000358901 BAZ1BQ9UIG0 1483 aaKnown RBP18.25■□□□□ 0.51
VCP-201ENST00000358901 CCNB3Q8WWL7 1395 aa18.24■□□□□ 0.51
VCP-201ENST00000358901 ARXQ96QS3 562 aa18.24■□□□□ 0.51
VCP-201ENST00000358901 NACADO15069 1562 aa18.22■□□□□ 0.51
VCP-201ENST00000358901 ANP32BQ92688 251 aaKnown RBP18.22■□□□□ 0.51
VCP-201ENST00000358901 BAZ1AQ9NRL2 1556 aaPredicted RBP18.19■□□□□ 0.5
VCP-201ENST00000358901 CFDP1Q9UEE9 299 aaPredicted RBP18.19■□□□□ 0.5
VCP-201ENST00000358901 PLEKHD1A6NEE1 506 aa18.18■□□□□ 0.5
VCP-201ENST00000358901 NPM1P06748 294 aaKnown RBP eCLIP18.18■□□□□ 0.5
VCP-201ENST00000358901 ESF1Q9H501 851 aaKnown RBP18.18■□□□□ 0.5
VCP-201ENST00000358901 CARD11Q9BXL7 1154 aa18.16■□□□□ 0.5
VCP-201ENST00000358901 PPP4R2Q9NY27 417 aa18.16■□□□□ 0.5
VCP-201ENST00000358901 KANK4Q5T7N3 995 aaPredicted RBP18.15■□□□□ 0.5
VCP-201ENST00000358901 KCNH8Q96L42 1107 aa18.14■□□□□ 0.49
VCP-201ENST00000358901 VPS8Q8N3P4 1428 aa18.12■□□□□ 0.49
VCP-201ENST00000358901 B4GALNT3Q6L9W6 998 aa18.12■□□□□ 0.49
VCP-201ENST00000358901 SENP3Q9H4L4 574 aaPredicted RBP18.11■□□□□ 0.49
VCP-201ENST00000358901 CCDC88BA6NC98 1476 aa18.1■□□□□ 0.49
VCP-201ENST00000358901 MROH2BQ7Z745 1585 aa18.09■□□□□ 0.49
VCP-201ENST00000358901 TIMELESSQ9UNS1 1208 aa18.09■□□□□ 0.49
VCP-201ENST00000358901 ABCC8Q09428 1581 aa18.07■□□□□ 0.48
VCP-201ENST00000358901 KNSTRNQ9Y448 316 aa18.07■□□□□ 0.48
VCP-201ENST00000358901 PLPPR3Q6T4P5 718 aa18.06■□□□□ 0.48
VCP-201ENST00000358901 DDRGK1Q96HY6 314 aa18.06■□□□□ 0.48
VCP-201ENST00000358901 CARMIL1Q5VZK9 1371 aa18.06■□□□□ 0.48
VCP-201ENST00000358901 FHAD1B1AJZ9 1412 aa18.04■□□□□ 0.48
VCP-201ENST00000358901 CCER2I3L3R5 266 aa18.04■□□□□ 0.48
VCP-201ENST00000358901 SETD5Q9C0A6 1442 aa18.02■□□□□ 0.47
VCP-201ENST00000358901 BECN1Q14457 450 aa18■□□□□ 0.47
VCP-201ENST00000358901 RBM19Q9Y4C8 960 aaKnown RBP18■□□□□ 0.47
VCP-201ENST00000358901 CUX2O14529 1486 aa18■□□□□ 0.47
VCP-201ENST00000358901 NEUROD2Q15784 382 aa18■□□□□ 0.47
VCP-201ENST00000358901 LAS1LQ9Y4W2 734 aaKnown RBP17.99■□□□□ 0.47
VCP-201ENST00000358901 CDCA8Q53HL2 280 aa17.99■□□□□ 0.47
VCP-201ENST00000358901 HSPA5P11021 654 aaKnown RBP17.98■□□□□ 0.47
VCP-201ENST00000358901 RGS3P49796 1198 aa17.98■□□□□ 0.47
VCP-201ENST00000358901 NOP58Q9Y2X3 529 aaKnown RBP17.98■□□□□ 0.47
VCP-201ENST00000358901 RAB3GAP2Q9H2M9 1393 aa17.97■□□□□ 0.47
VCP-201ENST00000358901 MYH16Q9H6N6 1097 aa17.97■□□□□ 0.47
VCP-201ENST00000358901 CC2D1BQ5T0F9 858 aaKnown RBP17.96■□□□□ 0.47
VCP-201ENST00000358901 PPM1GO15355 546 aaPredicted RBP17.95■□□□□ 0.46
VCP-201ENST00000358901 DCAF11Q8TEB1 546 aa17.94■□□□□ 0.46
VCP-201ENST00000358901 FOXD1Q16676 465 aa17.94■□□□□ 0.46
VCP-201ENST00000358901 CFAP53Q96M91 514 aa17.93■□□□□ 0.46
VCP-201ENST00000358901 PPP1R15AO75807 674 aaPredicted RBP17.9■□□□□ 0.46
VCP-201ENST00000358901 GLIPR1L2Q4G1C9 344 aa17.9■□□□□ 0.46
VCP-201ENST00000358901 FRAT1Q92837 279 aaPredicted RBP17.9■□□□□ 0.46
VCP-201ENST00000358901 TNNT2P45379 298 aaPredicted RBP17.89■□□□□ 0.45
VCP-201ENST00000358901 TSHZ2Q9NRE2 1034 aa17.88■□□□□ 0.45
VCP-201ENST00000358901 FTSJ3Q8IY81 847 aaKnown RBP17.88■□□□□ 0.45
VCP-201ENST00000358901 RTN4Q9NQC3 1192 aaKnown RBP17.86■□□□□ 0.45
VCP-201ENST00000358901 ARHGAP35Q9NRY4 1499 aa17.86■□□□□ 0.45
VCP-201ENST00000358901 PKD2Q13563 968 aa17.83■□□□□ 0.45
VCP-201ENST00000358901 TRIM44Q96DX7 344 aaPredicted RBP17.83■□□□□ 0.45
VCP-201ENST00000358901 TMF1P82094 1093 aa17.82■□□□□ 0.44
VCP-201ENST00000358901 MPHOSPH9Q99550 1183 aa17.81■□□□□ 0.44
VCP-201ENST00000358901 GOLGA6L22H0YM25 854 aa17.8■□□□□ 0.44
VCP-201ENST00000358901 PLEKHG5O94827 1062 aa17.79■□□□□ 0.44
VCP-201ENST00000358901 MAPK8IP3Q9UPT6 1336 aa17.79■□□□□ 0.44
VCP-201ENST00000358901 WIZO95785 1651 aa17.78■□□□□ 0.44
VCP-201ENST00000358901 NCLP19338 710 aaKnown RBP17.77■□□□□ 0.44
VCP-201ENST00000358901 EIF4G1Q04637 1599 aaKnown RBP17.77■□□□□ 0.44
VCP-201ENST00000358901 DEKP35659 375 aaKnown RBP17.77■□□□□ 0.44
VCP-201ENST00000358901 NUDCQ9Y266 331 aa17.77■□□□□ 0.44
VCP-201ENST00000358901 ERICH6BQ5W0A0 696 aa17.77■□□□□ 0.43
VCP-201ENST00000358901 L3MBTL2Q969R5 705 aa17.77■□□□□ 0.43
VCP-201ENST00000358901 DHX57Q6P158 1386 aaKnown RBP17.76■□□□□ 0.43
VCP-201ENST00000358901 RAPGEF2Q9Y4G8 1499 aa17.76■□□□□ 0.43
VCP-201ENST00000358901 U2SURPO15042 1029 aaKnown RBP17.75■□□□□ 0.43
VCP-201ENST00000358901 RUSC2Q8N2Y8 1516 aa17.75■□□□□ 0.43
VCP-201ENST00000358901 C14orf37Q86TY3 774 aa17.74■□□□□ 0.43
VCP-201ENST00000358901 ZBTB7CA1YPR0 619 aa17.73■□□□□ 0.43
VCP-201ENST00000358901 TDRD9Q8NDG6 1382 aaKnown RBP17.73■□□□□ 0.43
VCP-201ENST00000358901 RCAN3Q9UKA8 241 aa17.72■□□□□ 0.43
VCP-201ENST00000358901 POGKQ9P215 609 aa17.71■□□□□ 0.43
VCP-201ENST00000358901 FMN1Q68DA7 1419 aa17.69■□□□□ 0.42
VCP-201ENST00000358901 TOP2AP11388 1531 aaKnown RBP17.69■□□□□ 0.42
VCP-201ENST00000358901 KTN1Q86UP2 1357 aaKnown RBP17.68■□□□□ 0.42
VCP-201ENST00000358901 NUP155O75694 1391 aa17.67■□□□□ 0.42
VCP-201ENST00000358901 FHOD3Q2V2M9 1422 aa17.66■□□□□ 0.42
VCP-201ENST00000358901 TPRNQ4KMQ1 711 aa17.65■□□□□ 0.42
VCP-201ENST00000358901 MS4A1P11836 297 aa17.65■□□□□ 0.42
VCP-201ENST00000358901 MORC1Q86VD1 984 aa17.64■□□□□ 0.41
VCP-201ENST00000358901 RALBP1Q15311 655 aa17.64■□□□□ 0.41
VCP-201ENST00000358901 CASC1Q6TDU7 716 aa17.63■□□□□ 0.41
VCP-201ENST00000358901 PTMAP06454 111 aaKnown RBP17.63■□□□□ 0.41
VCP-201ENST00000358901 SAFB2Q14151 953 aaKnown RBP eCLIP17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms