RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 MYH16Q9H6N6 1097 aa19.61■□□□□ 0.73
CHD4-201ENST00000357008 TRIM44Q96DX7 344 aaPredicted RBP19.61■□□□□ 0.73
CHD4-201ENST00000357008 PPM1GO15355 546 aaPredicted RBP19.56■□□□□ 0.72
CHD4-201ENST00000357008 GOLGA6L22H0YM25 854 aa19.55■□□□□ 0.72
CHD4-201ENST00000357008 SUPT16HQ9Y5B9 1047 aaKnown RBP19.54■□□□□ 0.72
CHD4-201ENST00000357008 NCLP19338 710 aaKnown RBP19.51■□□□□ 0.71
CHD4-201ENST00000357008 MYO15BQ96JP2 1530 aa19.51■□□□□ 0.71
CHD4-201ENST00000357008 CCDC180Q9P1Z9 1646 aa19.5■□□□□ 0.71
CHD4-201ENST00000357008 EEA1Q15075 1411 aa19.49■□□□□ 0.71
CHD4-201ENST00000357008 ERICH6BQ5W0A0 696 aa19.49■□□□□ 0.71
CHD4-201ENST00000357008 CEP162Q5TB80 1403 aa19.49■□□□□ 0.71
CHD4-201ENST00000357008 PPP4R2Q9NY27 417 aa19.49■□□□□ 0.71
CHD4-201ENST00000357008 RRP7BPQ9NSQ0 103 aa19.48■□□□□ 0.71
CHD4-201ENST00000357008 GOLGA3Q08378 1498 aa19.46■□□□□ 0.71
CHD4-201ENST00000357008 NPM1P06748 294 aaKnown RBP eCLIP19.45■□□□□ 0.7
CHD4-201ENST00000357008 RSF1Q96T23 1441 aaPredicted RBP19.42■□□□□ 0.7
CHD4-201ENST00000357008 NOP58Q9Y2X3 529 aaKnown RBP19.42■□□□□ 0.7
CHD4-201ENST00000357008 TNNT2P45379 298 aaPredicted RBP19.41■□□□□ 0.7
CHD4-201ENST00000357008 PTMAP06454 111 aaKnown RBP19.37■□□□□ 0.69
CHD4-201ENST00000357008 CDCA8Q53HL2 280 aa19.37■□□□□ 0.69
CHD4-201ENST00000357008 CFAP53Q96M91 514 aa19.36■□□□□ 0.69
CHD4-201ENST00000357008 LAS1LQ9Y4W2 734 aaKnown RBP19.35■□□□□ 0.69
CHD4-201ENST00000357008 KNSTRNQ9Y448 316 aa19.35■□□□□ 0.69
CHD4-201ENST00000357008 TNIKQ9UKE5 1360 aa19.33■□□□□ 0.69
CHD4-201ENST00000357008 CDK11BP21127 795 aaKnown RBP19.32■□□□□ 0.68
CHD4-201ENST00000357008 CASC1Q6TDU7 716 aa19.32■□□□□ 0.68
CHD4-201ENST00000357008 FTSJ3Q8IY81 847 aaKnown RBP19.31■□□□□ 0.68
CHD4-201ENST00000357008 NAP1L5Q96NT1 182 aaPredicted RBP19.3■□□□□ 0.68
CHD4-201ENST00000357008 SENP3-EIF4A1A0A087X0R7 540 aa19.3■□□□□ 0.68
CHD4-201ENST00000357008 DNTTIP2Q5QJE6 756 aaKnown RBP19.3■□□□□ 0.68
CHD4-201ENST00000357008 CARD11Q9BXL7 1154 aa19.3■□□□□ 0.68
CHD4-201ENST00000357008 RGL3Q3MIN7 710 aa19.29■□□□□ 0.68
CHD4-201ENST00000357008 RTN4Q9NQC3 1192 aaKnown RBP19.28■□□□□ 0.68
CHD4-201ENST00000357008 RGS3P49796 1198 aa19.27■□□□□ 0.68
CHD4-201ENST00000357008 ZRSR1Q15695 479 aaKnown RBP19.26■□□□□ 0.67
CHD4-201ENST00000357008 PLPPR3Q6T4P5 718 aa19.25■□□□□ 0.67
CHD4-201ENST00000357008 B4GALNT3Q6L9W6 998 aa19.25■□□□□ 0.67
CHD4-201ENST00000357008 SIN3AQ96ST3 1273 aa19.24■□□□□ 0.67
CHD4-201ENST00000357008 CHMP7Q8WUX9 453 aaPredicted RBP19.24■□□□□ 0.67
CHD4-201ENST00000357008 PLEKHD1A6NEE1 506 aa19.23■□□□□ 0.67
CHD4-201ENST00000357008 CEP164Q9UPV0 1460 aa19.22■□□□□ 0.67
CHD4-201ENST00000357008 CCER2I3L3R5 266 aa19.2■□□□□ 0.66
CHD4-201ENST00000357008 WRNQ14191 1432 aaPredicted RBP eCLIP19.2■□□□□ 0.669e-6■■■■■ 50.1
CHD4-201ENST00000357008 CHMP4BQ9H444 224 aaKnown RBP19.19■□□□□ 0.66
CHD4-201ENST00000357008 TIMELESSQ9UNS1 1208 aa19.19■□□□□ 0.66
CHD4-201ENST00000357008 RBM19Q9Y4C8 960 aaKnown RBP19.18■□□□□ 0.66
CHD4-201ENST00000357008 MS4A1P11836 297 aa19.18■□□□□ 0.66
CHD4-201ENST00000357008 DEKP35659 375 aaKnown RBP19.18■□□□□ 0.66
CHD4-201ENST00000357008 NEUROD2Q15784 382 aa19.18■□□□□ 0.66
CHD4-201ENST00000357008 MAPK8IP3Q9UPT6 1336 aa19.17■□□□□ 0.66
CHD4-201ENST00000357008 CFDP1Q9UEE9 299 aaPredicted RBP19.17■□□□□ 0.66
CHD4-201ENST00000357008 FRAT1Q92837 279 aaPredicted RBP19.17■□□□□ 0.66
CHD4-201ENST00000357008 NUDCQ9Y266 331 aa19.16■□□□□ 0.66
CHD4-201ENST00000357008 HSP90AB1P08238 724 aaKnown RBP19.16■□□□□ 0.66
CHD4-201ENST00000357008 PPP1R15AO75807 674 aaPredicted RBP19.15■□□□□ 0.66
CHD4-201ENST00000357008 L1TD1Q5T7N2 865 aaKnown RBP19.14■□□□□ 0.65
CHD4-201ENST00000357008 KIF27Q86VH2 1401 aa19.13■□□□□ 0.65
CHD4-201ENST00000357008 TPRNQ4KMQ1 711 aa19.11■□□□□ 0.65
CHD4-201ENST00000357008 CCNB3Q8WWL7 1395 aa19.1■□□□□ 0.65
CHD4-201ENST00000357008 KCNH8Q96L42 1107 aa19.1■□□□□ 0.65
CHD4-201ENST00000357008 PLCB2Q00722 1185 aa19.09■□□□□ 0.65
CHD4-201ENST00000357008 C14orf37Q86TY3 774 aa19.09■□□□□ 0.65
CHD4-201ENST00000357008 ZBTB7CA1YPR0 619 aa19.09■□□□□ 0.65
CHD4-201ENST00000357008 HSCBQ8IWL3 235 aa19.09■□□□□ 0.65
CHD4-201ENST00000357008 CC2D1BQ5T0F9 858 aaKnown RBP19.08■□□□□ 0.65
CHD4-201ENST00000357008 SENP3Q9H4L4 574 aaPredicted RBP19.06■□□□□ 0.64
CHD4-201ENST00000357008 GOLGA6L6A8MZA4 724 aa19.06■□□□□ 0.64
CHD4-201ENST00000357008 NRDCO43847 1150 aa19.03■□□□□ 0.64
CHD4-201ENST00000357008 TMF1P82094 1093 aa19.02■□□□□ 0.64
CHD4-201ENST00000357008 MSNP26038 577 aaKnown RBP19.02■□□□□ 0.64
CHD4-201ENST00000357008 PNNQ9H307 717 aaKnown RBP19.02■□□□□ 0.64
CHD4-201ENST00000357008 A0A0G2JS52 829 aa19.01■□□□□ 0.63
CHD4-201ENST00000357008 CHAF1AQ13111 956 aaPredicted RBP19.01■□□□□ 0.63
CHD4-201ENST00000357008 FHAD1B1AJZ9 1412 aa18.98■□□□□ 0.63
CHD4-201ENST00000357008 U2SURPO15042 1029 aaKnown RBP18.97■□□□□ 0.63
CHD4-201ENST00000357008 CFAP44Q96MT7 982 aa18.97■□□□□ 0.63
CHD4-201ENST00000357008 PLEKHG5O94827 1062 aa18.97■□□□□ 0.63
CHD4-201ENST00000357008 HSPA5P11021 654 aaKnown RBP18.96■□□□□ 0.63
CHD4-201ENST00000357008 FGD1P98174 961 aa18.95■□□□□ 0.62
CHD4-201ENST00000357008 GOLGA6L4A6NEF3 574 aa18.95■□□□□ 0.62
CHD4-201ENST00000357008 DCAF11Q8TEB1 546 aa18.95■□□□□ 0.62
CHD4-201ENST00000357008 POGKQ9P215 609 aa18.95■□□□□ 0.62
CHD4-201ENST00000357008 TCERG1O14776 1098 aaKnown RBP18.95■□□□□ 0.62
CHD4-201ENST00000357008 SETD5Q9C0A6 1442 aa18.95■□□□□ 0.62
CHD4-201ENST00000357008 KCNJ4P48050 445 aa18.94■□□□□ 0.62
CHD4-201ENST00000357008 OS9Q13438 667 aaPredicted RBP18.94■□□□□ 0.62
CHD4-201ENST00000357008 TSHZ2Q9NRE2 1034 aa18.93■□□□□ 0.62
CHD4-201ENST00000357008 MCCP23508 829 aa18.92■□□□□ 0.62
CHD4-201ENST00000357008 PTMSP20962 102 aa18.91■□□□□ 0.62
CHD4-201ENST00000357008 RB1CC1Q8TDY2 1594 aa18.91■□□□□ 0.62
CHD4-201ENST00000357008 SPRYD3Q8NCJ5 442 aa18.91■□□□□ 0.62
CHD4-201ENST00000357008 BAZ1BQ9UIG0 1483 aaKnown RBP18.9■□□□□ 0.62
CHD4-201ENST00000357008 RCAN3Q9UKA8 241 aa18.9■□□□□ 0.62
CHD4-201ENST00000357008 GBP4Q96PP9 640 aa18.89■□□□□ 0.61
CHD4-201ENST00000357008 KTN1Q86UP2 1357 aaKnown RBP18.88■□□□□ 0.61
CHD4-201ENST00000357008 HAP1P54257 671 aaPredicted RBP18.86■□□□□ 0.61
CHD4-201ENST00000357008 VPS8Q8N3P4 1428 aa18.86■□□□□ 0.61
CHD4-201ENST00000357008 MORC1Q86VD1 984 aa18.85■□□□□ 0.61
CHD4-201ENST00000357008 IPO9Q96P70 1041 aaKnown RBP18.85■□□□□ 0.61
CHD4-201ENST00000357008 IPO8O15397 1037 aaKnown RBP18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms