RNA–Protein interactions for RNA: ENST00000355430.4

COLCA1-201, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,442 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-201ENST00000355430 MTUS2Q5JR59 1369 aa16.94■□□□□ 0.3
COLCA1-201ENST00000355430 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.89■□□□□ 0.29
COLCA1-201ENST00000355430 NEFMP07197 916 aa16.87■□□□□ 0.29
COLCA1-201ENST00000355430 FAM9BQ8IZU0 186 aa16.83■□□□□ 0.29
COLCA1-201ENST00000355430 CHIC2Q9UKJ5 165 aa16.82■□□□□ 0.28
COLCA1-201ENST00000355430 SUPT16HQ9Y5B9 1047 aaKnown RBP16.82■□□□□ 0.28
COLCA1-201ENST00000355430 IRX6P78412 446 aaPredicted RBP16.81■□□□□ 0.28
COLCA1-201ENST00000355430 SLC24A1O60721 1099 aa16.8■□□□□ 0.28
COLCA1-201ENST00000355430 VPS8Q8N3P4 1428 aa16.8■□□□□ 0.28
COLCA1-201ENST00000355430 PPP1R15AO75807 674 aaPredicted RBP16.78■□□□□ 0.28
COLCA1-201ENST00000355430 TOP2AP11388 1531 aaKnown RBP16.77■□□□□ 0.28
COLCA1-201ENST00000355430 ANP32AP39687 249 aaKnown RBP16.75■□□□□ 0.27
COLCA1-201ENST00000355430 SIN3AQ96ST3 1273 aa16.75■□□□□ 0.27
COLCA1-201ENST00000355430 CUX2O14529 1486 aa16.74■□□□□ 0.27
COLCA1-201ENST00000355430 CADPSQ9ULU8 1353 aa16.74■□□□□ 0.27
COLCA1-201ENST00000355430 EIF4G1Q04637 1599 aaKnown RBP16.72■□□□□ 0.27
COLCA1-201ENST00000355430 CCNB3Q8WWL7 1395 aa16.72■□□□□ 0.27
COLCA1-201ENST00000355430 C14orf37Q86TY3 774 aa16.71■□□□□ 0.27
COLCA1-201ENST00000355430 NPM2Q86SE8 214 aaKnown RBP16.71■□□□□ 0.27
COLCA1-201ENST00000355430 CFDP1Q9UEE9 299 aaPredicted RBP16.71■□□□□ 0.26
COLCA1-201ENST00000355430 CARMIL2Q6F5E8 1435 aa16.7■□□□□ 0.26
COLCA1-201ENST00000355430 KANK4Q5T7N3 995 aaPredicted RBP16.69■□□□□ 0.26
COLCA1-201ENST00000355430 ANP32EQ9BTT0 268 aa16.69■□□□□ 0.26
COLCA1-201ENST00000355430 MRS2Q9HD23 443 aa16.69■□□□□ 0.26
COLCA1-201ENST00000355430 RUSC2Q8N2Y8 1516 aa16.68■□□□□ 0.26
COLCA1-201ENST00000355430 RRP7BPQ9NSQ0 103 aa16.67■□□□□ 0.26
COLCA1-201ENST00000355430 CARMIL1Q5VZK9 1371 aa16.67■□□□□ 0.26
COLCA1-201ENST00000355430 EIF4G2P78344 907 aaKnown RBP eCLIP16.63■□□□□ 0.25
COLCA1-201ENST00000355430 ATAD2BQ9ULI0 1458 aa16.63■□□□□ 0.25
COLCA1-201ENST00000355430 TDRD9Q8NDG6 1382 aaKnown RBP16.61■□□□□ 0.25
COLCA1-201ENST00000355430 CCDC136Q96JN2 1154 aa16.61■□□□□ 0.25
COLCA1-201ENST00000355430 SALL2Q9Y467 1007 aaPredicted RBP16.6■□□□□ 0.25
COLCA1-201ENST00000355430 NBR1Q14596 966 aa16.6■□□□□ 0.25
COLCA1-201ENST00000355430 OSCARQ8IYS5 282 aa16.59■□□□□ 0.25
COLCA1-201ENST00000355430 SMARCA4P51532 1647 aa16.58■□□□□ 0.24
COLCA1-201ENST00000355430 ZBTB47Q9UFB7 747 aaPredicted RBP16.58■□□□□ 0.24
COLCA1-201ENST00000355430 TMC1Q8TDI8 760 aa16.57■□□□□ 0.24
COLCA1-201ENST00000355430 RAPGEF2Q9Y4G8 1499 aa16.57■□□□□ 0.24
COLCA1-201ENST00000355430 SETD5Q9C0A6 1442 aa16.56■□□□□ 0.24
COLCA1-201ENST00000355430 HAP1P54257 671 aaPredicted RBP16.54■□□□□ 0.24
COLCA1-201ENST00000355430 RAB3GAP2Q9H2M9 1393 aa16.53■□□□□ 0.24
COLCA1-201ENST00000355430 CANXP27824 592 aaKnown RBP16.52■□□□□ 0.24
COLCA1-201ENST00000355430 FHAD1B1AJZ9 1412 aa16.52■□□□□ 0.24
COLCA1-201ENST00000355430 MLECQ14165 292 aa16.51■□□□□ 0.23
COLCA1-201ENST00000355430 FANCD2Q9BXW9 1451 aa16.5■□□□□ 0.23
COLCA1-201ENST00000355430 DHX57Q6P158 1386 aaKnown RBP16.5■□□□□ 0.23
COLCA1-201ENST00000355430 KDM2AQ9Y2K7 1162 aa16.5■□□□□ 0.23
COLCA1-201ENST00000355430 HDGFP51858 240 aaKnown RBP16.5■□□□□ 0.23
COLCA1-201ENST00000355430 SENP3-EIF4A1A0A087X0R7 540 aa16.49■□□□□ 0.23
COLCA1-201ENST00000355430 TSHZ2Q9NRE2 1034 aa16.48■□□□□ 0.23
COLCA1-201ENST00000355430 KANK1Q14678 1352 aa16.47■□□□□ 0.23
COLCA1-201ENST00000355430 CCER2I3L3R5 266 aa16.47■□□□□ 0.23
COLCA1-201ENST00000355430 TIMELESSQ9UNS1 1208 aa16.45■□□□□ 0.22
COLCA1-201ENST00000355430 SENP3Q9H4L4 574 aaPredicted RBP16.45■□□□□ 0.22
COLCA1-201ENST00000355430 A0A0G2JS52 829 aa16.44■□□□□ 0.22
COLCA1-201ENST00000355430 CYB5RLQ6IPT4 315 aa16.44■□□□□ 0.22
COLCA1-201ENST00000355430 ARHGAP35Q9NRY4 1499 aa16.43■□□□□ 0.22
COLCA1-201ENST00000355430 RBM19Q9Y4C8 960 aaKnown RBP16.43■□□□□ 0.22
COLCA1-201ENST00000355430 PPP4R2Q9NY27 417 aa16.43■□□□□ 0.22
COLCA1-201ENST00000355430 ZBTB7CA1YPR0 619 aa16.41■□□□□ 0.22
COLCA1-201ENST00000355430 EFCAB2Q5VUJ9 269 aa16.41■□□□□ 0.22
COLCA1-201ENST00000355430 JPH4Q96JJ6 628 aa16.39■□□□□ 0.21
COLCA1-201ENST00000355430 PLEKHG5O94827 1062 aa16.38■□□□□ 0.21
COLCA1-201ENST00000355430 AEBP2Q6ZN18 517 aaPredicted RBP16.38■□□□□ 0.21
COLCA1-201ENST00000355430 B4GALNT3Q6L9W6 998 aa16.37■□□□□ 0.21
COLCA1-201ENST00000355430 HSPA5P11021 654 aaKnown RBP16.36■□□□□ 0.21
COLCA1-201ENST00000355430 NCAPD3P42695 1498 aa16.36■□□□□ 0.21
COLCA1-201ENST00000355430 RGL3Q3MIN7 710 aa16.36■□□□□ 0.21
COLCA1-201ENST00000355430 GGT6Q6P531 493 aa16.33■□□□□ 0.21
COLCA1-201ENST00000355430 FMN1Q68DA7 1419 aa16.32■□□□□ 0.2
COLCA1-201ENST00000355430 POGKQ9P215 609 aa16.32■□□□□ 0.2
COLCA1-201ENST00000355430 WDR43Q15061 677 aaKnown RBP eCLIP16.31■□□□□ 0.2
COLCA1-201ENST00000355430 KIF21BO75037 1637 aa16.31■□□□□ 0.2
COLCA1-201ENST00000355430 BCL11AQ9H165 835 aa16.3■□□□□ 0.2
COLCA1-201ENST00000355430 LMOD2Q6P5Q4 547 aa16.29■□□□□ 0.2
COLCA1-201ENST00000355430 CARD11Q9BXL7 1154 aa16.28■□□□□ 0.2
COLCA1-201ENST00000355430 CDCA8Q53HL2 280 aa16.28■□□□□ 0.2
COLCA1-201ENST00000355430 FOXD1Q16676 465 aa16.27■□□□□ 0.2
COLCA1-201ENST00000355430 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.27■□□□□ 0.2
COLCA1-201ENST00000355430 NOP58Q9Y2X3 529 aaKnown RBP16.27■□□□□ 0.2
COLCA1-201ENST00000355430 PTPRGP23470 1445 aa16.26■□□□□ 0.19
COLCA1-201ENST00000355430 FHOD3Q2V2M9 1422 aa16.26■□□□□ 0.19
COLCA1-201ENST00000355430 CC2D2AQ9P2K1 1620 aa16.25■□□□□ 0.19
COLCA1-201ENST00000355430 EIF5BO60841 1220 aaKnown RBP16.22■□□□□ 0.19
COLCA1-201ENST00000355430 SYNJ1O43426 1573 aa16.21■□□□□ 0.19
COLCA1-201ENST00000355430 UPF2Q9HAU5 1272 aaKnown RBP16.2■□□□□ 0.18
COLCA1-201ENST00000355430 GAPVD1Q14C86 1478 aa16.2■□□□□ 0.18
COLCA1-201ENST00000355430 DDRGK1Q96HY6 314 aa16.18■□□□□ 0.18
COLCA1-201ENST00000355430 MPHOSPH9Q99550 1183 aa16.18■□□□□ 0.18
COLCA1-201ENST00000355430 MRC2Q9UBG0 1479 aa16.18■□□□□ 0.18
COLCA1-201ENST00000355430 RSPH4AQ5TD94 716 aa16.18■□□□□ 0.18
COLCA1-201ENST00000355430 LAS1LQ9Y4W2 734 aaKnown RBP16.17■□□□□ 0.18
COLCA1-201ENST00000355430 EID1Q9Y6B2 187 aa16.17■□□□□ 0.18
COLCA1-201ENST00000355430 SPAG9O60271 1321 aaKnown RBP16.17■□□□□ 0.18
COLCA1-201ENST00000355430 FAM69CQ0P6D2 419 aa16.16■□□□□ 0.18
COLCA1-201ENST00000355430 ERICH6BQ5W0A0 696 aa16.15■□□□□ 0.18
COLCA1-201ENST00000355430 FGD5Q6ZNL6 1462 aa16.14■□□□□ 0.18
COLCA1-201ENST00000355430 DEKP35659 375 aaKnown RBP16.13■□□□□ 0.17
COLCA1-201ENST00000355430 CC2D1BQ5T0F9 858 aaKnown RBP16.13■□□□□ 0.17
COLCA1-201ENST00000355430 KIF3BO15066 747 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms