RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 PDS5BQ9NTI5 1447 aa20.4■□□□□ 0.86
COL17A1-201ENST00000353479 WIZO95785 1651 aa20.4■□□□□ 0.86
COL17A1-201ENST00000353479 ZBTB47Q9UFB7 747 aaPredicted RBP20.39■□□□□ 0.85
COL17A1-201ENST00000353479 SENP3Q9H4L4 574 aaPredicted RBP20.38■□□□□ 0.85
COL17A1-201ENST00000353479 BCL11AQ9H165 835 aa20.38■□□□□ 0.85
COL17A1-201ENST00000353479 TOP2AP11388 1531 aaKnown RBP20.33■□□□□ 0.85
COL17A1-201ENST00000353479 HIRIP3Q9BW71 556 aaPredicted RBP20.31■□□□□ 0.84
COL17A1-201ENST00000353479 FAM9BQ8IZU0 186 aa20.3■□□□□ 0.84
COL17A1-201ENST00000353479 ARID4BQ4LE39 1312 aaPredicted RBP20.29■□□□□ 0.84
COL17A1-201ENST00000353479 TDRD9Q8NDG6 1382 aaKnown RBP20.29■□□□□ 0.84
COL17A1-201ENST00000353479 RGL3Q3MIN7 710 aa20.28■□□□□ 0.84
COL17A1-201ENST00000353479 FHAD1B1AJZ9 1412 aa20.27■□□□□ 0.83
COL17A1-201ENST00000353479 PPP1R15AO75807 674 aaPredicted RBP20.26■□□□□ 0.83
COL17A1-201ENST00000353479 ATAD2BQ9ULI0 1458 aa20.25■□□□□ 0.83
COL17A1-201ENST00000353479 CADPSQ9ULU8 1353 aa20.25■□□□□ 0.83
COL17A1-201ENST00000353479 HNRNPUQ00839 825 aaKnown RBP eCLIP20.24■□□□□ 0.83
COL17A1-201ENST00000353479 SALL2Q9Y467 1007 aaPredicted RBP20.24■□□□□ 0.83
COL17A1-201ENST00000353479 CCNB3Q8WWL7 1395 aa20.23■□□□□ 0.83
COL17A1-201ENST00000353479 TMC1Q8TDI8 760 aa20.21■□□□□ 0.83
COL17A1-201ENST00000353479 EIF4G2P78344 907 aaKnown RBP eCLIP20.21■□□□□ 0.83
COL17A1-201ENST00000353479 SMARCA4P51532 1647 aa20.21■□□□□ 0.83
COL17A1-201ENST00000353479 ACIN1Q9UKV3 1341 aaKnown RBP20.17■□□□□ 0.82
COL17A1-201ENST00000353479 SCAF1Q9H7N4 1312 aaKnown RBP20.14■□□□□ 0.81
COL17A1-201ENST00000353479 RTL5Q5HYW3 569 aaPredicted RBP20.14■□□□□ 0.81
COL17A1-201ENST00000353479 MRS2Q9HD23 443 aa20.13■□□□□ 0.81
COL17A1-201ENST00000353479 WDR43Q15061 677 aaKnown RBP eCLIP20.12■□□□□ 0.81
COL17A1-201ENST00000353479 CARMIL2Q6F5E8 1435 aa20.11■□□□□ 0.81
COL17A1-201ENST00000353479 TRHP20396 242 aaPredicted RBP20.09■□□□□ 0.81
COL17A1-201ENST00000353479 PLEKHG5O94827 1062 aa20.09■□□□□ 0.81
COL17A1-201ENST00000353479 C14orf37Q86TY3 774 aa20.08■□□□□ 0.81
COL17A1-201ENST00000353479 SIN3AQ96ST3 1273 aa20.07■□□□□ 0.8
COL17A1-201ENST00000353479 VPS8Q8N3P4 1428 aa20.06■□□□□ 0.8
COL17A1-201ENST00000353479 FKBP8Q14318 412 aa20.05■□□□□ 0.8
COL17A1-201ENST00000353479 ZBTB7CA1YPR0 619 aa20.03■□□□□ 0.8
COL17A1-201ENST00000353479 KANK4Q5T7N3 995 aaPredicted RBP20.03■□□□□ 0.8
COL17A1-201ENST00000353479 CARD11Q9BXL7 1154 aa20.03■□□□□ 0.8
COL17A1-201ENST00000353479 MIER1Q8N108 512 aa20.02■□□□□ 0.8
COL17A1-201ENST00000353479 FANCD2Q9BXW9 1451 aa20.01■□□□□ 0.79
COL17A1-201ENST00000353479 ARHGAP35Q9NRY4 1499 aa20■□□□□ 0.79
COL17A1-201ENST00000353479 MLECQ14165 292 aa19.99■□□□□ 0.79
COL17A1-201ENST00000353479 RAPGEF2Q9Y4G8 1499 aa19.98■□□□□ 0.79
COL17A1-201ENST00000353479 FMN1Q68DA7 1419 aa19.98■□□□□ 0.79
COL17A1-201ENST00000353479 MYT1Q01538 1121 aa19.97■□□□□ 0.79
COL17A1-201ENST00000353479 KANK1Q14678 1352 aa19.94■□□□□ 0.78
COL17A1-201ENST00000353479 CDCA8Q53HL2 280 aa19.93■□□□□ 0.78
COL17A1-201ENST00000353479 FHOD3Q2V2M9 1422 aa19.92■□□□□ 0.78
COL17A1-201ENST00000353479 POGKQ9P215 609 aa19.9■□□□□ 0.78
COL17A1-201ENST00000353479 A0A0G2JS52 829 aa19.9■□□□□ 0.78
COL17A1-201ENST00000353479 GGT6Q6P531 493 aa19.9■□□□□ 0.78
COL17A1-201ENST00000353479 KNSTRNQ9Y448 316 aa19.9■□□□□ 0.78
COL17A1-201ENST00000353479 NPM2Q86SE8 214 aaKnown RBP19.9■□□□□ 0.78
COL17A1-201ENST00000353479 DCAF11Q8TEB1 546 aa19.89■□□□□ 0.77
COL17A1-201ENST00000353479 JPH4Q96JJ6 628 aa19.88■□□□□ 0.77
COL17A1-201ENST00000353479 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.88■□□□□ 0.77
COL17A1-201ENST00000353479 SETD5Q9C0A6 1442 aa19.86■□□□□ 0.77
COL17A1-201ENST00000353479 EFCAB2Q5VUJ9 269 aa19.86■□□□□ 0.77
COL17A1-201ENST00000353479 PPM1GO15355 546 aaPredicted RBP19.85■□□□□ 0.77
COL17A1-201ENST00000353479 RUSC2Q8N2Y8 1516 aa19.85■□□□□ 0.77
COL17A1-201ENST00000353479 ANP32AP39687 249 aaKnown RBP19.84■□□□□ 0.77
COL17A1-201ENST00000353479 SENP3-EIF4A1A0A087X0R7 540 aa19.84■□□□□ 0.77
COL17A1-201ENST00000353479 HAP1P54257 671 aaPredicted RBP19.82■□□□□ 0.76
COL17A1-201ENST00000353479 PKD2Q13563 968 aa19.82■□□□□ 0.76
COL17A1-201ENST00000353479 FOXD1Q16676 465 aa19.82■□□□□ 0.76
COL17A1-201ENST00000353479 CFAP53Q96M91 514 aa19.82■□□□□ 0.76
COL17A1-201ENST00000353479 CCDC136Q96JN2 1154 aa19.81■□□□□ 0.76
COL17A1-201ENST00000353479 IRX6P78412 446 aaPredicted RBP19.79■□□□□ 0.76
COL17A1-201ENST00000353479 HNRNPMP52272 730 aaKnown RBP eCLIP19.77■□□□□ 0.76
COL17A1-201ENST00000353479 LMOD2Q6P5Q4 547 aa19.77■□□□□ 0.76
COL17A1-201ENST00000353479 NCAPD3P42695 1498 aa19.76■□□□□ 0.75
COL17A1-201ENST00000353479 FGD5Q6ZNL6 1462 aa19.76■□□□□ 0.75
COL17A1-201ENST00000353479 TNNT2P45379 298 aaPredicted RBP19.74■□□□□ 0.75
COL17A1-201ENST00000353479 ANKRD30AQ9BXX3 1397 aa19.74■□□□□ 0.75
COL17A1-201ENST00000353479 RAD54L2Q9Y4B4 1467 aa19.73■□□□□ 0.75
COL17A1-201ENST00000353479 NUP155O75694 1391 aa19.73■□□□□ 0.75
COL17A1-201ENST00000353479 HDGFP51858 240 aaKnown RBP19.73■□□□□ 0.75
COL17A1-201ENST00000353479 CC2D1BQ5T0F9 858 aaKnown RBP19.72■□□□□ 0.75
COL17A1-201ENST00000353479 RAB3GAP2Q9H2M9 1393 aa19.72■□□□□ 0.75
COL17A1-201ENST00000353479 SAFB2Q14151 953 aaKnown RBP eCLIP19.71■□□□□ 0.75
COL17A1-201ENST00000353479 TMF1P82094 1093 aa19.71■□□□□ 0.75
COL17A1-201ENST00000353479 UPF2Q9HAU5 1272 aaKnown RBP19.71■□□□□ 0.75
COL17A1-201ENST00000353479 CCDC18Q5T9S5 1454 aa19.71■□□□□ 0.75
COL17A1-201ENST00000353479 MPHOSPH9Q99550 1183 aa19.71■□□□□ 0.75
COL17A1-201ENST00000353479 GAPVD1Q14C86 1478 aa19.7■□□□□ 0.74
COL17A1-201ENST00000353479 KIF3BO15066 747 aa19.69■□□□□ 0.74
COL17A1-201ENST00000353479 NEUROD2Q15784 382 aa19.69■□□□□ 0.74
COL17A1-201ENST00000353479 TIMELESSQ9UNS1 1208 aa19.68■□□□□ 0.74
COL17A1-201ENST00000353479 HSP90AA1P07900 732 aaKnown RBP19.67■□□□□ 0.74
COL17A1-201ENST00000353479 PTPRGP23470 1445 aa19.67■□□□□ 0.74
COL17A1-201ENST00000353479 SRPK2P78362 688 aaKnown RBP19.66■□□□□ 0.74
COL17A1-201ENST00000353479 STK26Q9P289 416 aa19.66■□□□□ 0.74
COL17A1-201ENST00000353479 SPAG9O60271 1321 aaKnown RBP19.66■□□□□ 0.74
COL17A1-201ENST00000353479 MYH16Q9H6N6 1097 aa19.65■□□□□ 0.74
COL17A1-201ENST00000353479 IGF1RP08069 1367 aa19.65■□□□□ 0.74
COL17A1-201ENST00000353479 NUDCQ9Y266 331 aa19.64■□□□□ 0.73
COL17A1-201ENST00000353479 OSCARQ8IYS5 282 aa19.64■□□□□ 0.73
COL17A1-201ENST00000353479 MAPK8IP3Q9UPT6 1336 aa19.64■□□□□ 0.73
COL17A1-201ENST00000353479 CYB5RLQ6IPT4 315 aa19.63■□□□□ 0.73
COL17A1-201ENST00000353479 HSPA5P11021 654 aaKnown RBP19.62■□□□□ 0.73
COL17A1-201ENST00000353479 LAS1LQ9Y4W2 734 aaKnown RBP19.61■□□□□ 0.73
COL17A1-201ENST00000353479 AQRO60306 1485 aaKnown RBP eCLIP19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms