RNA–Protein interactions for RNA: ENST00000346436.10

CLCN6-202, Transcript of chloride voltage-gated channel 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLCN6, Length 5,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN6-202ENST00000346436 CHIC2Q9UKJ5 165 aa14.88□□□□□ -0.03
CLCN6-202ENST00000346436 TONSLQ96HA7 1378 aa14.87□□□□□ -0.03
CLCN6-202ENST00000346436 CEP164Q9UPV0 1460 aa14.86□□□□□ -0.03
CLCN6-202ENST00000346436 AEBP2Q6ZN18 517 aaPredicted RBP14.85□□□□□ -0.03
CLCN6-202ENST00000346436 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.85□□□□□ -0.036e-7■□□□□ 10.9
CLCN6-202ENST00000346436 CANXP27824 592 aaKnown RBP14.85□□□□□ -0.03
CLCN6-202ENST00000346436 HNRNPUQ00839 825 aaKnown RBP eCLIP14.85□□□□□ -0.03
CLCN6-202ENST00000346436 IRX6P78412 446 aaPredicted RBP14.83□□□□□ -0.03
CLCN6-202ENST00000346436 BAZ1BQ9UIG0 1483 aaKnown RBP14.81□□□□□ -0.04
CLCN6-202ENST00000346436 FAM9BQ8IZU0 186 aa14.8□□□□□ -0.04
CLCN6-202ENST00000346436 SIN3AQ96ST3 1273 aa14.8□□□□□ -0.04
CLCN6-202ENST00000346436 RUSC2Q8N2Y8 1516 aa14.78□□□□□ -0.04
CLCN6-202ENST00000346436 KANK4Q5T7N3 995 aaPredicted RBP14.77□□□□□ -0.04
CLCN6-202ENST00000346436 HDGFP51858 240 aaKnown RBP14.75□□□□□ -0.05
CLCN6-202ENST00000346436 MTUS2Q5JR59 1369 aa14.73□□□□□ -0.05
CLCN6-202ENST00000346436 RRP7BPQ9NSQ0 103 aa14.73□□□□□ -0.05
CLCN6-202ENST00000346436 SENP3-EIF4A1A0A087X0R7 540 aa14.73□□□□□ -0.05
CLCN6-202ENST00000346436 RTL5Q5HYW3 569 aaPredicted RBP14.71□□□□□ -0.05
CLCN6-202ENST00000346436 ZBTB7CA1YPR0 619 aa14.71□□□□□ -0.05
CLCN6-202ENST00000346436 SUPT16HQ9Y5B9 1047 aaKnown RBP14.7□□□□□ -0.06
CLCN6-202ENST00000346436 VPS8Q8N3P4 1428 aa14.69□□□□□ -0.06
CLCN6-202ENST00000346436 KIF27Q86VH2 1401 aa14.68□□□□□ -0.06
CLCN6-202ENST00000346436 SALL2Q9Y467 1007 aaPredicted RBP14.68□□□□□ -0.06
CLCN6-202ENST00000346436 TOP2AP11388 1531 aaKnown RBP14.67□□□□□ -0.06
CLCN6-202ENST00000346436 CCNB3Q8WWL7 1395 aa14.64□□□□□ -0.07
CLCN6-202ENST00000346436 PDS5BQ9NTI5 1447 aa14.63□□□□□ -0.07
CLCN6-202ENST00000346436 MRS2Q9HD23 443 aa14.63□□□□□ -0.07
CLCN6-202ENST00000346436 BCL11AQ9H165 835 aa14.62□□□□□ -0.07
CLCN6-202ENST00000346436 PLEKHG5O94827 1062 aa14.61□□□□□ -0.07
CLCN6-202ENST00000346436 RAPGEF2Q9Y4G8 1499 aa14.6□□□□□ -0.07
CLCN6-202ENST00000346436 LMOD2Q6P5Q4 547 aa14.58□□□□□ -0.08
CLCN6-202ENST00000346436 KDM2AQ9Y2K7 1162 aa14.57□□□□□ -0.08
CLCN6-202ENST00000346436 NPHP1O15259 732 aa14.57□□□□□ -0.08
CLCN6-202ENST00000346436 CFDP1Q9UEE9 299 aaPredicted RBP14.55□□□□□ -0.08
CLCN6-202ENST00000346436 CUX2O14529 1486 aa14.55□□□□□ -0.08
CLCN6-202ENST00000346436 EIF4G2P78344 907 aaKnown RBP eCLIP14.55□□□□□ -0.08
CLCN6-202ENST00000346436 SMARCA4P51532 1647 aa14.54□□□□□ -0.08
CLCN6-202ENST00000346436 MLECQ14165 292 aa14.54□□□□□ -0.08
CLCN6-202ENST00000346436 NBR1Q14596 966 aa14.53□□□□□ -0.08
CLCN6-202ENST00000346436 ANP32AP39687 249 aaKnown RBP14.52□□□□□ -0.08
CLCN6-202ENST00000346436 KANK1Q14678 1352 aa14.52□□□□□ -0.08
CLCN6-202ENST00000346436 RAB3GAP2Q9H2M9 1393 aa14.52□□□□□ -0.09
CLCN6-202ENST00000346436 CARMIL1Q5VZK9 1371 aa14.51□□□□□ -0.09
CLCN6-202ENST00000346436 CARMIL2Q6F5E8 1435 aa14.5□□□□□ -0.09
CLCN6-202ENST00000346436 TMC1Q8TDI8 760 aa14.5□□□□□ -0.09
CLCN6-202ENST00000346436 CCDC136Q96JN2 1154 aa14.5□□□□□ -0.09
CLCN6-202ENST00000346436 SMARCA2P51531 1590 aa14.48□□□□□ -0.09
CLCN6-202ENST00000346436 POGKQ9P215 609 aa14.48□□□□□ -0.09
CLCN6-202ENST00000346436 DHX57Q6P158 1386 aaKnown RBP14.47□□□□□ -0.09
CLCN6-202ENST00000346436 SETD5Q9C0A6 1442 aa14.47□□□□□ -0.09
CLCN6-202ENST00000346436 ARXQ96QS3 562 aa14.47□□□□□ -0.09
CLCN6-202ENST00000346436 ANP32EQ9BTT0 268 aa14.47□□□□□ -0.09
CLCN6-202ENST00000346436 CDCA8Q53HL2 280 aa14.47□□□□□ -0.09
CLCN6-202ENST00000346436 FOXD1Q16676 465 aa14.44□□□□□ -0.1
CLCN6-202ENST00000346436 WDR43Q15061 677 aaKnown RBP eCLIP14.44□□□□□ -0.1
CLCN6-202ENST00000346436 SENP3Q9H4L4 574 aaPredicted RBP14.42□□□□□ -0.1
CLCN6-202ENST00000346436 OSCARQ8IYS5 282 aa14.41□□□□□ -0.1
CLCN6-202ENST00000346436 CFAP53Q96M91 514 aa14.4□□□□□ -0.1
CLCN6-202ENST00000346436 ATAD2BQ9ULI0 1458 aa14.4□□□□□ -0.1
CLCN6-202ENST00000346436 TSHZ2Q9NRE2 1034 aa14.4□□□□□ -0.1
CLCN6-202ENST00000346436 FHAD1B1AJZ9 1412 aa14.39□□□□□ -0.11
CLCN6-202ENST00000346436 B4GALNT3Q6L9W6 998 aa14.39□□□□□ -0.11
CLCN6-202ENST00000346436 RGL3Q3MIN7 710 aa14.38□□□□□ -0.11
CLCN6-202ENST00000346436 DCAF8L1A6NGE4 600 aa14.37□□□□□ -0.11
CLCN6-202ENST00000346436 HSPA5P11021 654 aaKnown RBP14.37□□□□□ -0.11
CLCN6-202ENST00000346436 MYH16Q9H6N6 1097 aa14.37□□□□□ -0.11
CLCN6-202ENST00000346436 EID1Q9Y6B2 187 aa14.36□□□□□ -0.11
CLCN6-202ENST00000346436 ARHGAP35Q9NRY4 1499 aa14.36□□□□□ -0.11
CLCN6-202ENST00000346436 RBM19Q9Y4C8 960 aaKnown RBP14.35□□□□□ -0.11
CLCN6-202ENST00000346436 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.35□□□□□ -0.11
CLCN6-202ENST00000346436 EIF4G1Q04637 1599 aaKnown RBP14.35□□□□□ -0.11
CLCN6-202ENST00000346436 FHOD3Q2V2M9 1422 aa14.34□□□□□ -0.11
CLCN6-202ENST00000346436 CCDC9Q9Y3X0 531 aaKnown RBP14.33□□□□□ -0.11
CLCN6-202ENST00000346436 TMX4Q9H1E5 349 aaPredicted RBP14.33□□□□□ -0.12
CLCN6-202ENST00000346436 EFCAB2Q5VUJ9 269 aa14.32□□□□□ -0.12
CLCN6-202ENST00000346436 CCER2I3L3R5 266 aa14.31□□□□□ -0.12
CLCN6-202ENST00000346436 KIF21BO75037 1637 aa14.3□□□□□ -0.12
CLCN6-202ENST00000346436 CDK11BP21127 795 aaKnown RBP14.3□□□□□ -0.12
CLCN6-202ENST00000346436 TDRD9Q8NDG6 1382 aaKnown RBP14.3□□□□□ -0.12
CLCN6-202ENST00000346436 GGT6Q6P531 493 aa14.3□□□□□ -0.12
CLCN6-202ENST00000346436 CARD11Q9BXL7 1154 aa14.29□□□□□ -0.12
CLCN6-202ENST00000346436 CYB5RLQ6IPT4 315 aa14.29□□□□□ -0.12
CLCN6-202ENST00000346436 PPP4R2Q9NY27 417 aa14.28□□□□□ -0.12
CLCN6-202ENST00000346436 SYNJ1O43426 1573 aa14.27□□□□□ -0.12
CLCN6-202ENST00000346436 TIMELESSQ9UNS1 1208 aa14.27□□□□□ -0.12
CLCN6-202ENST00000346436 NUDCQ9Y266 331 aa14.27□□□□□ -0.12
CLCN6-202ENST00000346436 UPF2Q9HAU5 1272 aaKnown RBP14.27□□□□□ -0.13
CLCN6-202ENST00000346436 PPM1GO15355 546 aaPredicted RBP14.25□□□□□ -0.13
CLCN6-202ENST00000346436 HSP90AA1P07900 732 aaKnown RBP14.24□□□□□ -0.13
CLCN6-202ENST00000346436 CSB-PGBD3P0DP91 1061 aa14.23□□□□□ -0.13
CLCN6-202ENST00000346436 MPHOSPH9Q99550 1183 aa14.23□□□□□ -0.13
CLCN6-202ENST00000346436 PNNQ9H307 717 aaKnown RBP14.22□□□□□ -0.13
CLCN6-202ENST00000346436 GOLGA2Q08379 1002 aa14.22□□□□□ -0.13
CLCN6-202ENST00000346436 CC2D1BQ5T0F9 858 aaKnown RBP14.21□□□□□ -0.14
CLCN6-202ENST00000346436 MEX3CQ5U5Q3 659 aaKnown RBP14.21□□□□□ -0.14
CLCN6-202ENST00000346436 MAPK8IP3Q9UPT6 1336 aa14.21□□□□□ -0.14
CLCN6-202ENST00000346436 L3MBTL2Q969R5 705 aa14.2□□□□□ -0.14
CLCN6-202ENST00000346436 KNSTRNQ9Y448 316 aa14.2□□□□□ -0.14
CLCN6-202ENST00000346436 DCAF11Q8TEB1 546 aa14.19□□□□□ -0.14
CLCN6-202ENST00000346436 ARAP1Q96P48 1450 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms