RNA–Protein interactions for RNA: ENST00000343805.10

SP140-201, Transcript of SP140 nuclear body protein, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SP140, Length 2,910 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SP140-201ENST00000343805 SMARCA4P51532 1647 aa12.89□□□□□ -0.35
SP140-201ENST00000343805 TOP2AP11388 1531 aaKnown RBP12.88□□□□□ -0.35
SP140-201ENST00000343805 TRHP20396 242 aaPredicted RBP12.88□□□□□ -0.35
SP140-201ENST00000343805 VASPP50552 380 aaPredicted RBP12.87□□□□□ -0.35
SP140-201ENST00000343805 CEP162Q5TB80 1403 aa12.86□□□□□ -0.35
SP140-201ENST00000343805 SMARCA2P51531 1590 aa12.86□□□□□ -0.35
SP140-201ENST00000343805 MYCNP04198 464 aaPredicted RBP12.84□□□□□ -0.35
SP140-201ENST00000343805 EIF4G1Q04637 1599 aaKnown RBP12.84□□□□□ -0.35
SP140-201ENST00000343805 HNRNPUL2Q1KMD3 747 aaKnown RBP12.82□□□□□ -0.36
SP140-201ENST00000343805 PLEKHG5O94827 1062 aa12.82□□□□□ -0.36
SP140-201ENST00000343805 ANO8Q9HCE9 1232 aaPredicted RBP12.82□□□□□ -0.36
SP140-201ENST00000343805 DNAJC5BQ9UF47 199 aa12.8□□□□□ -0.36
SP140-201ENST00000343805 ATXN8OSP0DMR3 200 aa12.78□□□□□ -0.36
SP140-201ENST00000343805 RNF216Q9NWF9 866 aaPredicted RBP12.78□□□□□ -0.36
SP140-201ENST00000343805 DIEXFQ68CQ4 756 aaKnown RBP12.77□□□□□ -0.37
SP140-201ENST00000343805 TNIKQ9UKE5 1360 aa12.76□□□□□ -0.37
SP140-201ENST00000343805 RGL2O15211 777 aa12.75□□□□□ -0.37
SP140-201ENST00000343805 WRNQ14191 1432 aaPredicted RBP eCLIP12.75□□□□□ -0.37
SP140-201ENST00000343805 NBR1Q14596 966 aa12.74□□□□□ -0.37
SP140-201ENST00000343805 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.73□□□□□ -0.37
SP140-201ENST00000343805 BBXQ8WY36 941 aaPredicted RBP12.7□□□□□ -0.38
SP140-201ENST00000343805 YTHDC1Q96MU7 727 aaKnown RBP12.68□□□□□ -0.38
SP140-201ENST00000343805 GOLGA3Q08378 1498 aa12.68□□□□□ -0.38
SP140-201ENST00000343805 PKNOX2Q96KN3 472 aa12.66□□□□□ -0.38
SP140-201ENST00000343805 ERICH6BQ5W0A0 696 aa12.66□□□□□ -0.38
SP140-201ENST00000343805 EEA1Q15075 1411 aa12.64□□□□□ -0.39
SP140-201ENST00000343805 CLIP1P30622 1438 aa12.63□□□□□ -0.39
SP140-201ENST00000343805 BAZ1BQ9UIG0 1483 aaKnown RBP12.63□□□□□ -0.39
SP140-201ENST00000343805 SYNJ1O43426 1573 aa12.63□□□□□ -0.39
SP140-201ENST00000343805 ATAD2BQ9ULI0 1458 aa12.62□□□□□ -0.39
SP140-201ENST00000343805 SPRYD3Q8NCJ5 442 aa12.61□□□□□ -0.39
SP140-201ENST00000343805 SPDYE4A6NLX3 237 aa12.61□□□□□ -0.39
SP140-201ENST00000343805 ECM2O94769 699 aaPredicted RBP12.61□□□□□ -0.39
SP140-201ENST00000343805 ZNF316A6NFI3 1004 aaPredicted RBP12.59□□□□□ -0.39
SP140-201ENST00000343805 RAPGEF2Q9Y4G8 1499 aa12.59□□□□□ -0.39
SP140-201ENST00000343805 MYT1LQ9UL68 1186 aa12.58□□□□□ -0.39
SP140-201ENST00000343805 CEP164Q9UPV0 1460 aa12.58□□□□□ -0.4
SP140-201ENST00000343805 FBXO3Q9UK99 471 aa12.57□□□□□ -0.4
SP140-201ENST00000343805 CLSPNQ9HAW4 1339 aa12.57□□□□□ -0.4
SP140-201ENST00000343805 NPM2Q86SE8 214 aaKnown RBP12.56□□□□□ -0.4
SP140-201ENST00000343805 ITGAEP38570 1179 aa12.55□□□□□ -0.4
SP140-201ENST00000343805 CHGAP10645 457 aaKnown RBP12.54□□□□□ -0.4
SP140-201ENST00000343805 MKRN4PQ13434 485 aaPredicted RBP12.51□□□□□ -0.41
SP140-201ENST00000343805 SALL2Q9Y467 1007 aaPredicted RBP12.51□□□□□ -0.41
SP140-201ENST00000343805 MIER1Q8N108 512 aa12.51□□□□□ -0.41
SP140-201ENST00000343805 CC2D2AQ9P2K1 1620 aa12.5□□□□□ -0.41
SP140-201ENST00000343805 VPS8Q8N3P4 1428 aa12.5□□□□□ -0.41
SP140-201ENST00000343805 KANK4Q5T7N3 995 aaPredicted RBP12.49□□□□□ -0.41
SP140-201ENST00000343805 PEG3Q9GZU2 1588 aa12.48□□□□□ -0.41
SP140-201ENST00000343805 ARID3AQ99856 593 aa12.48□□□□□ -0.41
SP140-201ENST00000343805 KIF21BO75037 1637 aa12.44□□□□□ -0.42
SP140-201ENST00000343805 ATP1B4Q9UN42 357 aaPredicted RBP12.44□□□□□ -0.42
SP140-201ENST00000343805 BRPF1P55201 1214 aaPredicted RBP12.42□□□□□ -0.42
SP140-201ENST00000343805 NEFLP07196 543 aa12.41□□□□□ -0.42
SP140-201ENST00000343805 HOXD11P31277 338 aaPredicted RBP12.41□□□□□ -0.42
SP140-201ENST00000343805 P3H3Q8IVL6 736 aa12.4□□□□□ -0.42
SP140-201ENST00000343805 DNAJC5Q9H3Z4 198 aa12.39□□□□□ -0.43
SP140-201ENST00000343805 TOP2BQ02880 1626 aa12.37□□□□□ -0.43
SP140-201ENST00000343805 PROM2Q8N271 834 aa12.36□□□□□ -0.43
SP140-201ENST00000343805 CCDC136Q96JN2 1154 aa12.34□□□□□ -0.43
SP140-201ENST00000343805 ARAP1Q96P48 1450 aa12.34□□□□□ -0.43
SP140-201ENST00000343805 KIF27Q86VH2 1401 aa12.34□□□□□ -0.43
SP140-201ENST00000343805 CUX1P39880 1505 aa12.33□□□□□ -0.44
SP140-201ENST00000343805 PRXQ9BXM0 1461 aa12.32□□□□□ -0.44
SP140-201ENST00000343805 NKX1-1Q15270 411 aaPredicted RBP12.31□□□□□ -0.44
SP140-201ENST00000343805 DHX57Q6P158 1386 aaKnown RBP12.3□□□□□ -0.44
SP140-201ENST00000343805 NCAPD3P42695 1498 aa12.3□□□□□ -0.44
SP140-201ENST00000343805 PDIA4P13667 645 aaKnown RBP12.3□□□□□ -0.44
SP140-201ENST00000343805 FAM50AQ14320 339 aaKnown RBP12.3□□□□□ -0.44
SP140-201ENST00000343805 C1orf115Q9H7X2 142 aa12.28□□□□□ -0.44
SP140-201ENST00000343805 SUPT16HQ9Y5B9 1047 aaKnown RBP12.28□□□□□ -0.44
SP140-201ENST00000343805 CUX2O14529 1486 aa12.28□□□□□ -0.44
SP140-201ENST00000343805 PDE4CQ08493 712 aa12.27□□□□□ -0.45
SP140-201ENST00000343805 BIVM-ERCC5R4GMW8 1640 aa12.25□□□□□ -0.45
SP140-201ENST00000343805 DEKP35659 375 aaKnown RBP12.25□□□□□ -0.45
SP140-201ENST00000343805 ARID3CA6NKF2 412 aa12.24□□□□□ -0.45
SP140-201ENST00000343805 ZNF219Q9P2Y4 722 aaPredicted RBP12.24□□□□□ -0.45
SP140-201ENST00000343805 CCNB3Q8WWL7 1395 aa12.24□□□□□ -0.45
SP140-201ENST00000343805 ARHGAP35Q9NRY4 1499 aa12.24□□□□□ -0.45
SP140-201ENST00000343805 CFTRP13569 1480 aa12.23□□□□□ -0.45
SP140-201ENST00000343805 ERICH3Q5RHP9 1530 aa12.23□□□□□ -0.45
SP140-201ENST00000343805 IGF1RP08069 1367 aa12.23□□□□□ -0.45
SP140-201ENST00000343805 HMGXB3Q12766 1538 aa12.23□□□□□ -0.45
SP140-201ENST00000343805 HIRIP3Q9BW71 556 aaPredicted RBP12.22□□□□□ -0.45
SP140-201ENST00000343805 SIN3AQ96ST3 1273 aa12.21□□□□□ -0.45
SP140-201ENST00000343805 CARMIL1Q5VZK9 1371 aa12.21□□□□□ -0.45
SP140-201ENST00000343805 NESP48681 1621 aa12.21□□□□□ -0.45
SP140-201ENST00000343805 FGD1P98174 961 aa12.21□□□□□ -0.46
SP140-201ENST00000343805 RNF25Q96BH1 459 aaPredicted RBP12.21□□□□□ -0.46
SP140-201ENST00000343805 KCNH8Q96L42 1107 aa12.19□□□□□ -0.46
SP140-201ENST00000343805 U3KPZ7 1027 aaPredicted RBP12.19□□□□□ -0.46
SP140-201ENST00000343805 NEUROD2Q15784 382 aa12.18□□□□□ -0.46
SP140-201ENST00000343805 RAB3GAP2Q9H2M9 1393 aa12.18□□□□□ -0.46
SP140-201ENST00000343805 SPOCK2Q92563 424 aa12.17□□□□□ -0.46
SP140-201ENST00000343805 CADPSQ9ULU8 1353 aa12.17□□□□□ -0.46
SP140-201ENST00000343805 DMRT2Q9Y5R5 561 aa12.17□□□□□ -0.46
SP140-201ENST00000343805 RRBP1Q9P2E9 1410 aaKnown RBP12.16□□□□□ -0.46
SP140-201ENST00000343805 FGD5Q6ZNL6 1462 aa12.16□□□□□ -0.46
SP140-201ENST00000343805 DDX10Q13206 875 aaKnown RBP12.14□□□□□ -0.47
SP140-201ENST00000343805 LMOD2Q6P5Q4 547 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms