RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 AMER1Q5JTC6 1135 aaPredicted RBP22.93■■□□□ 1.26
SMAD4-201ENST00000342988 PNNQ9H307 717 aaKnown RBP22.92■■□□□ 1.26
SMAD4-201ENST00000342988 PRM3Q9NNZ6 103 aa22.92■■□□□ 1.26
SMAD4-201ENST00000342988 FAM9BQ8IZU0 186 aa22.91■■□□□ 1.26
SMAD4-201ENST00000342988 GOLGA6L1Q8N7Z2 621 aa22.9■■□□□ 1.26
SMAD4-201ENST00000342988 PPM1GO15355 546 aaPredicted RBP22.9■■□□□ 1.26
SMAD4-201ENST00000342988 PLCB2Q00722 1185 aa22.89■■□□□ 1.25
SMAD4-201ENST00000342988 SETQ01105 290 aaPredicted RBP22.86■■□□□ 1.25
SMAD4-201ENST00000342988 DRC7Q8IY82 874 aa22.84■■□□□ 1.25
SMAD4-201ENST00000342988 FGD1P98174 961 aa22.84■■□□□ 1.25
SMAD4-201ENST00000342988 GOLGA6L4A6NEF3 574 aa22.83■■□□□ 1.24
SMAD4-201ENST00000342988 A0A0U1RQG5 324 aaPredicted RBP22.81■■□□□ 1.24
SMAD4-201ENST00000342988 CHMP4BQ9H444 224 aaKnown RBP22.79■■□□□ 1.24
SMAD4-201ENST00000342988 SALL2Q9Y467 1007 aaPredicted RBP22.79■■□□□ 1.24
SMAD4-201ENST00000342988 CHGAP10645 457 aaKnown RBP22.79■■□□□ 1.24
SMAD4-201ENST00000342988 GOLGA2Q08379 1002 aa22.78■■□□□ 1.24
SMAD4-201ENST00000342988 FTSJ3Q8IY81 847 aaKnown RBP22.77■■□□□ 1.24
SMAD4-201ENST00000342988 NPHP1O15259 732 aa22.77■■□□□ 1.24
SMAD4-201ENST00000342988 TPRNQ4KMQ1 711 aa22.76■■□□□ 1.23
SMAD4-201ENST00000342988 FBLN2P98095 1184 aa22.75■■□□□ 1.23
SMAD4-201ENST00000342988 HSP90AB1P08238 724 aaKnown RBP22.74■■□□□ 1.23
SMAD4-201ENST00000342988 PTMSP20962 102 aa22.71■■□□□ 1.23
SMAD4-201ENST00000342988 CFAP44Q96MT7 982 aa22.69■■□□□ 1.22
SMAD4-201ENST00000342988 KCNJ4P48050 445 aa22.68■■□□□ 1.22
SMAD4-201ENST00000342988 ZNF777Q9ULD5 760 aaPredicted RBP22.66■■□□□ 1.22
SMAD4-201ENST00000342988 GNL2Q13823 731 aaKnown RBP22.64■■□□□ 1.21
SMAD4-201ENST00000342988 MCCP23508 829 aa22.63■■□□□ 1.21
SMAD4-201ENST00000342988 NAP1L2Q9ULW6 460 aaPredicted RBP22.63■■□□□ 1.21
SMAD4-201ENST00000342988 TPM4P67936 248 aa22.6■■□□□ 1.21
SMAD4-201ENST00000342988 MRS2Q9HD23 443 aa22.6■■□□□ 1.21
SMAD4-201ENST00000342988 CCDC34Q96HJ3 373 aa22.59■■□□□ 1.21
SMAD4-201ENST00000342988 C14orf37Q86TY3 774 aa22.58■■□□□ 1.21
SMAD4-201ENST00000342988 HAP1P54257 671 aaPredicted RBP22.58■■□□□ 1.2
SMAD4-201ENST00000342988 PLPPR3Q6T4P5 718 aa22.57■■□□□ 1.2
SMAD4-201ENST00000342988 CFAP53Q96M91 514 aa22.57■■□□□ 1.2
SMAD4-201ENST00000342988 EIF4G2P78344 907 aaKnown RBP eCLIP22.56■■□□□ 1.2
SMAD4-201ENST00000342988 HSCBQ8IWL3 235 aa22.56■■□□□ 1.2
SMAD4-201ENST00000342988 OS9Q13438 667 aaPredicted RBP22.56■■□□□ 1.2
SMAD4-201ENST00000342988 MS4A1P11836 297 aa22.55■■□□□ 1.2
SMAD4-201ENST00000342988 TAOK2Q9UL54 1235 aa22.53■■□□□ 1.2
SMAD4-201ENST00000342988 HTATSF1O43719 755 aaKnown RBP22.52■■□□□ 1.2
SMAD4-201ENST00000342988 CEP89Q96ST8 783 aa22.52■■□□□ 1.2
SMAD4-201ENST00000342988 SYAP1Q96A49 352 aaPredicted RBP22.52■■□□□ 1.19
SMAD4-201ENST00000342988 ZBTB7CA1YPR0 619 aa22.51■■□□□ 1.19
SMAD4-201ENST00000342988 RTN4Q9NQC3 1192 aaKnown RBP22.5■■□□□ 1.19
SMAD4-201ENST00000342988 DDX10Q13206 875 aaKnown RBP22.5■■□□□ 1.19
SMAD4-201ENST00000342988 KRI1Q8N9T8 703 aaKnown RBP22.5■■□□□ 1.19
SMAD4-201ENST00000342988 NPM1P06748 294 aaKnown RBP eCLIP22.49■■□□□ 1.19
SMAD4-201ENST00000342988 NOP58Q9Y2X3 529 aaKnown RBP22.46■■□□□ 1.19
SMAD4-201ENST00000342988 RRP12Q5JTH9 1297 aaKnown RBP22.44■■□□□ 1.18
SMAD4-201ENST00000342988 CDCA8Q53HL2 280 aa22.42■■□□□ 1.18
SMAD4-201ENST00000342988 ISY1Q9ULR0 285 aaKnown RBP22.4■■□□□ 1.18
SMAD4-201ENST00000342988 GBP4Q96PP9 640 aa22.37■■□□□ 1.17
SMAD4-201ENST00000342988 CCDC70Q6NSX1 233 aa22.36■■□□□ 1.17
SMAD4-201ENST00000342988 MAPK8IP3Q9UPT6 1336 aa22.35■■□□□ 1.17
SMAD4-201ENST00000342988 PPP1R15AO75807 674 aaPredicted RBP22.35■■□□□ 1.17
SMAD4-201ENST00000342988 GPS2Q13227 327 aa22.35■■□□□ 1.17
SMAD4-201ENST00000342988 CSPP1Q1MSJ5 1256 aa22.35■■□□□ 1.17
SMAD4-201ENST00000342988 PHF14O94880 888 aa22.34■■□□□ 1.17
SMAD4-201ENST00000342988 TPM3P06753 285 aa22.34■■□□□ 1.17
SMAD4-201ENST00000342988 LAS1LQ9Y4W2 734 aaKnown RBP22.33■■□□□ 1.16
SMAD4-201ENST00000342988 KIAA1211Q6ZU35 1233 aa22.32■■□□□ 1.16
SMAD4-201ENST00000342988 ARID4BQ4LE39 1312 aaPredicted RBP22.31■■□□□ 1.16
SMAD4-201ENST00000342988 IRX6P78412 446 aaPredicted RBP22.31■■□□□ 1.16
SMAD4-201ENST00000342988 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.3■■□□□ 1.163e-6■■□□□ 11.7
SMAD4-201ENST00000342988 KNSTRNQ9Y448 316 aa22.29■■□□□ 1.16
SMAD4-201ENST00000342988 ARID3CA6NKF2 412 aa22.27■■□□□ 1.15
SMAD4-201ENST00000342988 NUDCQ9Y266 331 aa22.26■■□□□ 1.15
SMAD4-201ENST00000342988 TSR1Q2NL82 804 aaKnown RBP22.26■■□□□ 1.15
SMAD4-201ENST00000342988 TMX4Q9H1E5 349 aaPredicted RBP22.26■■□□□ 1.15
SMAD4-201ENST00000342988 KAT6BQ8WYB5 2073 aa22.24■■□□□ 1.15
SMAD4-201ENST00000342988 HMMRO75330 724 aa22.24■■□□□ 1.15
SMAD4-201ENST00000342988 KDM2AQ9Y2K7 1162 aa22.23■■□□□ 1.15
SMAD4-201ENST00000342988 NOM1Q5C9Z4 860 aaKnown RBP22.19■■□□□ 1.14
SMAD4-201ENST00000342988 GOLGA6L3A6NEY3 463 aa22.19■■□□□ 1.14
SMAD4-201ENST00000342988 PLEKHG5O94827 1062 aa22.18■■□□□ 1.14
SMAD4-201ENST00000342988 TSPY4P0CV99 314 aa22.18■■□□□ 1.14
SMAD4-201ENST00000342988 TSPY10P0CW01 314 aa22.18■■□□□ 1.14
SMAD4-201ENST00000342988 P3H3Q8IVL6 736 aa22.18■■□□□ 1.14
SMAD4-201ENST00000342988 PDE4CQ08493 712 aa22.17■■□□□ 1.14
SMAD4-201ENST00000342988 ARID3AQ99856 593 aa22.17■■□□□ 1.14
SMAD4-201ENST00000342988 TEX35Q5T0J7 233 aa22.16■■□□□ 1.14
SMAD4-201ENST00000342988 RGS3P49796 1198 aa22.16■■□□□ 1.14
SMAD4-201ENST00000342988 TPM2P07951 284 aa22.15■■□□□ 1.14
SMAD4-201ENST00000342988 GPATCH3Q96I76 525 aa22.15■■□□□ 1.14
SMAD4-201ENST00000342988 HSP90B1P14625 803 aaKnown RBP22.14■■□□□ 1.13
SMAD4-201ENST00000342988 CALD1Q05682 793 aaKnown RBP22.14■■□□□ 1.13
SMAD4-201ENST00000342988 RASSF8Q8NHQ8 419 aa22.13■■□□□ 1.13
SMAD4-201ENST00000342988 PATL2C9JE40 543 aaKnown RBP22.13■■□□□ 1.13
SMAD4-201ENST00000342988 TPM1P09493 284 aa22.13■■□□□ 1.13
SMAD4-201ENST00000342988 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.13■■□□□ 1.13
SMAD4-201ENST00000342988 HSP90AA2PQ14568 343 aaPredicted RBP22.12■■□□□ 1.13
SMAD4-201ENST00000342988 PPP4R2Q9NY27 417 aa22.11■■□□□ 1.13
SMAD4-201ENST00000342988 DEKP35659 375 aaKnown RBP22.08■■□□□ 1.13
SMAD4-201ENST00000342988 CDR1P51861 262 aa22.07■■□□□ 1.12
SMAD4-201ENST00000342988 KIF3AQ9Y496 699 aa22.07■■□□□ 1.12
SMAD4-201ENST00000342988 FRAT1Q92837 279 aaPredicted RBP22.07■■□□□ 1.12
SMAD4-201ENST00000342988 TPD52L1Q16890 204 aaPredicted RBP22.04■■□□□ 1.12
SMAD4-201ENST00000342988 CCDC191Q8NCU4 936 aa22.03■■□□□ 1.12
SMAD4-201ENST00000342988 CHMP4AQ9BY43 222 aa22.02■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms