RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 ARID4BQ4LE39 1312 aaPredicted RBP11.62□□□□□ -0.55
RTN3-202ENST00000339997 SIN3AQ96ST3 1273 aa11.61□□□□□ -0.55
RTN3-202ENST00000339997 RRP7BPQ9NSQ0 103 aa11.61□□□□□ -0.55
RTN3-202ENST00000339997 PLEKHG5O94827 1062 aa11.6□□□□□ -0.55
RTN3-202ENST00000339997 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.58□□□□□ -0.56
RTN3-202ENST00000339997 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.58□□□□□ -0.56
RTN3-202ENST00000339997 RGS3P49796 1198 aa11.58□□□□□ -0.56
RTN3-202ENST00000339997 NACADO15069 1562 aa11.57□□□□□ -0.56
RTN3-202ENST00000339997 RBM19Q9Y4C8 960 aaKnown RBP11.57□□□□□ -0.56
RTN3-202ENST00000339997 RB1CC1Q8TDY2 1594 aa11.56□□□□□ -0.56
RTN3-202ENST00000339997 DEKP35659 375 aaKnown RBP11.56□□□□□ -0.56
RTN3-202ENST00000339997 WDR43Q15061 677 aaKnown RBP eCLIP11.55□□□□□ -0.56
RTN3-202ENST00000339997 NEUROD2Q15784 382 aa11.55□□□□□ -0.56
RTN3-202ENST00000339997 NCLP19338 710 aaKnown RBP11.54□□□□□ -0.56
RTN3-202ENST00000339997 RGL3Q3MIN7 710 aa11.54□□□□□ -0.56
RTN3-202ENST00000339997 EIF4G2P78344 907 aaKnown RBP eCLIP11.53□□□□□ -0.56
RTN3-202ENST00000339997 NAP1L5Q96NT1 182 aaPredicted RBP11.52□□□□□ -0.57
RTN3-202ENST00000339997 NOP58Q9Y2X3 529 aaKnown RBP11.52□□□□□ -0.57
RTN3-202ENST00000339997 TRIM44Q96DX7 344 aaPredicted RBP11.51□□□□□ -0.57
RTN3-202ENST00000339997 SPRYD3Q8NCJ5 442 aa11.5□□□□□ -0.57
RTN3-202ENST00000339997 AMER1Q5JTC6 1135 aaPredicted RBP11.5□□□□□ -0.57
RTN3-202ENST00000339997 ZBTB7CA1YPR0 619 aa11.49□□□□□ -0.57
RTN3-202ENST00000339997 ARID3AQ99856 593 aa11.48□□□□□ -0.57
RTN3-202ENST00000339997 TSHZ2Q9NRE2 1034 aa11.47□□□□□ -0.57
RTN3-202ENST00000339997 CDK11BP21127 795 aaKnown RBP11.46□□□□□ -0.57
RTN3-202ENST00000339997 BICRAQ9NZM4 1560 aa11.46□□□□□ -0.57
RTN3-202ENST00000339997 PPP4R2Q9NY27 417 aa11.45□□□□□ -0.58
RTN3-202ENST00000339997 TAOK2Q9UL54 1235 aa11.44□□□□□ -0.58
RTN3-202ENST00000339997 WIZO95785 1651 aa11.44□□□□□ -0.58
RTN3-202ENST00000339997 TNNT2P45379 298 aaPredicted RBP11.44□□□□□ -0.58
RTN3-202ENST00000339997 PLCB2Q00722 1185 aa11.44□□□□□ -0.58
RTN3-202ENST00000339997 FRAT1Q92837 279 aaPredicted RBP11.44□□□□□ -0.58
RTN3-202ENST00000339997 KCNH8Q96L42 1107 aa11.44□□□□□ -0.58
RTN3-202ENST00000339997 STAG3Q9UJ98 1225 aa11.44□□□□□ -0.58
RTN3-202ENST00000339997 DNTTIP2Q5QJE6 756 aaKnown RBP11.43□□□□□ -0.58
RTN3-202ENST00000339997 CLIP1P30622 1438 aa11.41□□□□□ -0.58
RTN3-202ENST00000339997 PPM1GO15355 546 aaPredicted RBP11.41□□□□□ -0.58
RTN3-202ENST00000339997 BECN1Q14457 450 aa11.41□□□□□ -0.58
RTN3-202ENST00000339997 ERICH6BQ5W0A0 696 aa11.41□□□□□ -0.58
RTN3-202ENST00000339997 RSF1Q96T23 1441 aaPredicted RBP11.4□□□□□ -0.58
RTN3-202ENST00000339997 DDRGK1Q96HY6 314 aa11.4□□□□□ -0.58
RTN3-202ENST00000339997 PTMAP06454 111 aaKnown RBP11.4□□□□□ -0.58
RTN3-202ENST00000339997 CECR2Q9BXF3 1484 aa11.39□□□□□ -0.59
RTN3-202ENST00000339997 CC2D1BQ5T0F9 858 aaKnown RBP11.39□□□□□ -0.59
RTN3-202ENST00000339997 MTUS2Q5JR59 1369 aa11.39□□□□□ -0.59
RTN3-202ENST00000339997 MROH2BQ7Z745 1585 aa11.39□□□□□ -0.59
RTN3-202ENST00000339997 GZF1Q9H116 711 aaPredicted RBP11.38□□□□□ -0.59
RTN3-202ENST00000339997 CEP162Q5TB80 1403 aa11.37□□□□□ -0.59
RTN3-202ENST00000339997 TSPY4P0CV99 314 aa11.37□□□□□ -0.59
RTN3-202ENST00000339997 TSPY10P0CW01 314 aa11.37□□□□□ -0.59
RTN3-202ENST00000339997 SCRIBQ14160 1630 aa11.36□□□□□ -0.59
RTN3-202ENST00000339997 SLKQ9H2G2 1235 aaPredicted RBP11.35□□□□□ -0.59
RTN3-202ENST00000339997 A0A0G2JS52 829 aa11.34□□□□□ -0.59
RTN3-202ENST00000339997 CARD11Q9BXL7 1154 aa11.34□□□□□ -0.59
RTN3-202ENST00000339997 MYH16Q9H6N6 1097 aa11.34□□□□□ -0.59
RTN3-202ENST00000339997 FOXD1Q16676 465 aa11.33□□□□□ -0.6
RTN3-202ENST00000339997 GOLGA6L22H0YM25 854 aa11.32□□□□□ -0.6
RTN3-202ENST00000339997 FTSJ3Q8IY81 847 aaKnown RBP11.31□□□□□ -0.6
RTN3-202ENST00000339997 SLC4A3P48751 1232 aa11.29□□□□□ -0.6
RTN3-202ENST00000339997 KNSTRNQ9Y448 316 aa11.29□□□□□ -0.6
RTN3-202ENST00000339997 ESF1Q9H501 851 aaKnown RBP11.29□□□□□ -0.6
RTN3-202ENST00000339997 C14orf37Q86TY3 774 aa11.28□□□□□ -0.6
RTN3-202ENST00000339997 BAZ1AQ9NRL2 1556 aaPredicted RBP11.27□□□□□ -0.61
RTN3-202ENST00000339997 TULP1O00294 542 aaPredicted RBP11.27□□□□□ -0.61
RTN3-202ENST00000339997 APBB1O00213 710 aa11.26□□□□□ -0.61
RTN3-202ENST00000339997 HSP90AB1P08238 724 aaKnown RBP11.25□□□□□ -0.61
RTN3-202ENST00000339997 PEG3Q9GZU2 1588 aa11.25□□□□□ -0.61
RTN3-202ENST00000339997 PRKCSHP14314 528 aaPredicted RBP11.24□□□□□ -0.61
RTN3-202ENST00000339997 U2SURPO15042 1029 aaKnown RBP11.24□□□□□ -0.61
RTN3-202ENST00000339997 BAZ1BQ9UIG0 1483 aaKnown RBP11.23□□□□□ -0.61
RTN3-202ENST00000339997 HSPA5P11021 654 aaKnown RBP11.23□□□□□ -0.61
RTN3-202ENST00000339997 KANK4Q5T7N3 995 aaPredicted RBP11.23□□□□□ -0.61
RTN3-202ENST00000339997 SOX12O15370 315 aa11.22□□□□□ -0.61
RTN3-202ENST00000339997 DCAF11Q8TEB1 546 aa11.21□□□□□ -0.61
RTN3-202ENST00000339997 FOXD4L1Q9NU39 408 aa11.2□□□□□ -0.62
RTN3-202ENST00000339997 SAFB2Q14151 953 aaKnown RBP eCLIP11.2□□□□□ -0.621e-7■■■■□ 23.5
RTN3-202ENST00000339997 TIMELESSQ9UNS1 1208 aa11.19□□□□□ -0.62
RTN3-202ENST00000339997 CLUAP1Q96AJ1 413 aa11.18□□□□□ -0.62
RTN3-202ENST00000339997 PNNQ9H307 717 aaKnown RBP11.18□□□□□ -0.62
RTN3-202ENST00000339997 CFDP1Q9UEE9 299 aaPredicted RBP11.18□□□□□ -0.62
RTN3-202ENST00000339997 NAP1L2Q9ULW6 460 aaPredicted RBP11.18□□□□□ -0.62
RTN3-202ENST00000339997 ZRSR1Q15695 479 aaKnown RBP11.17□□□□□ -0.62
RTN3-202ENST00000339997 SMARCA2P51531 1590 aa11.16□□□□□ -0.62
RTN3-202ENST00000339997 MSNP26038 577 aaKnown RBP11.16□□□□□ -0.62
RTN3-202ENST00000339997 IPO9Q96P70 1041 aaKnown RBP11.16□□□□□ -0.62
RTN3-202ENST00000339997 PLIN1O60240 522 aa11.15□□□□□ -0.62
RTN3-202ENST00000339997 CFAP53Q96M91 514 aa11.15□□□□□ -0.62
RTN3-202ENST00000339997 RCAN3Q9UKA8 241 aa11.15□□□□□ -0.62
RTN3-202ENST00000339997 HSCBQ8IWL3 235 aa11.15□□□□□ -0.62
RTN3-202ENST00000339997 CHMP7Q8WUX9 453 aaPredicted RBP11.14□□□□□ -0.63
RTN3-202ENST00000339997 MAPK8IP3Q9UPT6 1336 aa11.14□□□□□ -0.63
RTN3-202ENST00000339997 CCER2I3L3R5 266 aa11.14□□□□□ -0.63
RTN3-202ENST00000339997 SMARCA4P51532 1647 aa11.13□□□□□ -0.63
RTN3-202ENST00000339997 SOGA1O94964 1423 aa11.12□□□□□ -0.63
RTN3-202ENST00000339997 PPP1R15AO75807 674 aaPredicted RBP11.12□□□□□ -0.63
RTN3-202ENST00000339997 GOLGA3Q08378 1498 aa11.12□□□□□ -0.63
RTN3-202ENST00000339997 TNIKQ9UKE5 1360 aa11.12□□□□□ -0.63
RTN3-202ENST00000339997 MFAP1P55081 439 aaKnown RBP11.12□□□□□ -0.63
RTN3-202ENST00000339997 FGD1P98174 961 aa11.12□□□□□ -0.63
RTN3-202ENST00000339997 FOXD4L5Q5VV16 416 aaPredicted RBP11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms