RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 ADAMTS12P58397 1594 aa20.88■□□□□ 0.93
HMGB1-202ENST00000339872 FHAD1B1AJZ9 1412 aa20.85■□□□□ 0.93
HMGB1-202ENST00000339872 TTBK1Q5TCY1 1321 aaPredicted RBP20.82■□□□□ 0.92
HMGB1-202ENST00000339872 SNAPC4Q5SXM2 1469 aa20.78■□□□□ 0.92
HMGB1-202ENST00000339872 APLP2Q06481 763 aa20.77■□□□□ 0.92
HMGB1-202ENST00000339872 EFCAB5A4FU69 1503 aa20.76■□□□□ 0.91
HMGB1-202ENST00000339872 MAGI1Q96QZ7 1491 aaPredicted RBP20.71■□□□□ 0.91
HMGB1-202ENST00000339872 P3H3Q8IVL6 736 aa20.7■□□□□ 0.9
HMGB1-202ENST00000339872 FHOD3Q2V2M9 1422 aa20.69■□□□□ 0.9
HMGB1-202ENST00000339872 SAMD9Q5K651 1589 aa20.68■□□□□ 0.9
HMGB1-202ENST00000339872 IQGAP2Q13576 1575 aa20.67■□□□□ 0.9
HMGB1-202ENST00000339872 GRIN2AQ12879 1464 aa20.66■□□□□ 0.9
HMGB1-202ENST00000339872 SYNJ2O15056 1496 aa20.64■□□□□ 0.89
HMGB1-202ENST00000339872 PCF11O94913 1555 aaKnown RBP20.64■□□□□ 0.89
HMGB1-202ENST00000339872 CHMP7Q8WUX9 453 aaPredicted RBP20.59■□□□□ 0.89
HMGB1-202ENST00000339872 TIAM1Q13009 1591 aa20.58■□□□□ 0.88
HMGB1-202ENST00000339872 FMN1Q68DA7 1419 aa20.57■□□□□ 0.88
HMGB1-202ENST00000339872 KIAA0586Q9BVV6 1533 aa20.57■□□□□ 0.88
HMGB1-202ENST00000339872 KANK4Q5T7N3 995 aaPredicted RBP20.56■□□□□ 0.88
HMGB1-202ENST00000339872 FYCO1Q9BQS8 1478 aa20.56■□□□□ 0.88
HMGB1-202ENST00000339872 CEP170Q5SW79 1584 aa20.55■□□□□ 0.88
HMGB1-202ENST00000339872 FBLN2P98095 1184 aa20.55■□□□□ 0.88
HMGB1-202ENST00000339872 CFAP43Q8NDM7 1665 aa20.55■□□□□ 0.88
HMGB1-202ENST00000339872 MAP3K1Q13233 1512 aa20.54■□□□□ 0.88
HMGB1-202ENST00000339872 UGGT2Q9NYU1 1516 aa20.54■□□□□ 0.88
HMGB1-202ENST00000339872 CASKIN1Q8WXD9 1431 aa20.53■□□□□ 0.88
HMGB1-202ENST00000339872 HRCP23327 699 aa20.53■□□□□ 0.88
HMGB1-202ENST00000339872 ATP1B4Q9UN42 357 aaPredicted RBP20.51■□□□□ 0.87
HMGB1-202ENST00000339872 NUP160Q12769 1436 aa20.48■□□□□ 0.87
HMGB1-202ENST00000339872 KIAA0556O60303 1618 aa20.47■□□□□ 0.87
HMGB1-202ENST00000339872 LRRC9Q6ZRR7 1453 aa20.45■□□□□ 0.86
HMGB1-202ENST00000339872 CHD1O14646 1710 aa20.45■□□□□ 0.86
HMGB1-202ENST00000339872 LRRIQ1Q96JM4 1722 aa20.44■□□□□ 0.86
HMGB1-202ENST00000339872 DISP1Q96F81 1524 aa20.44■□□□□ 0.86
HMGB1-202ENST00000339872 HECW1Q76N89 1606 aa20.39■□□□□ 0.85
HMGB1-202ENST00000339872 RRBP1Q9P2E9 1410 aaKnown RBP20.34■□□□□ 0.85
HMGB1-202ENST00000339872 JPH4Q96JJ6 628 aa20.33■□□□□ 0.84
HMGB1-202ENST00000339872 CCDC18Q5T9S5 1454 aa20.33■□□□□ 0.84
HMGB1-202ENST00000339872 HNRNPUL2Q1KMD3 747 aaKnown RBP20.32■□□□□ 0.84
HMGB1-202ENST00000339872 CARMIL2Q6F5E8 1435 aa20.31■□□□□ 0.84
HMGB1-202ENST00000339872 MTUS2Q5JR59 1369 aa20.29■□□□□ 0.84
HMGB1-202ENST00000339872 RAPGEF6Q8TEU7 1601 aa20.29■□□□□ 0.84
HMGB1-202ENST00000339872 CCNB3Q8WWL7 1395 aa20.28■□□□□ 0.84
HMGB1-202ENST00000339872 EPRSP07814 1512 aaKnown RBP20.28■□□□□ 0.84
HMGB1-202ENST00000339872 PHLDB1Q86UU1 1377 aa20.28■□□□□ 0.84
HMGB1-202ENST00000339872 EHBP1L1Q8N3D4 1523 aa20.27■□□□□ 0.83
HMGB1-202ENST00000339872 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.26■□□□□ 0.83
HMGB1-202ENST00000339872 CDK13Q14004 1512 aaKnown RBP20.26■□□□□ 0.83
HMGB1-202ENST00000339872 SUPT6HQ7KZ85 1726 aaKnown RBP20.23■□□□□ 0.83
HMGB1-202ENST00000339872 MAGI3Q5TCQ9 1506 aa20.23■□□□□ 0.83
HMGB1-202ENST00000339872 NUP153P49790 1475 aaKnown RBP20.22■□□□□ 0.83
HMGB1-202ENST00000339872 PRG4Q92954 1404 aaPredicted RBP20.22■□□□□ 0.83
HMGB1-202ENST00000339872 SHROOM2Q13796 1616 aa20.21■□□□□ 0.83
HMGB1-202ENST00000339872 ARID3CA6NKF2 412 aa20.21■□□□□ 0.83
HMGB1-202ENST00000339872 CCER1Q8TC90 406 aaPredicted RBP20.2■□□□□ 0.82
HMGB1-202ENST00000339872 PLB1Q6P1J6 1458 aa20.2■□□□□ 0.82
HMGB1-202ENST00000339872 ZEB1P37275 1124 aaPredicted RBP20.2■□□□□ 0.82
HMGB1-202ENST00000339872 NCOA2Q15596 1464 aa20.18■□□□□ 0.82
HMGB1-202ENST00000339872 CLASP1Q7Z460 1538 aa20.15■□□□□ 0.82
HMGB1-202ENST00000339872 ABCA8O94911 1581 aa20.14■□□□□ 0.81
HMGB1-202ENST00000339872 ARHGEF11O15085 1522 aa20.13■□□□□ 0.81
HMGB1-202ENST00000339872 FGD6Q6ZV73 1430 aa20.13■□□□□ 0.81
HMGB1-202ENST00000339872 ITGAEP38570 1179 aa20.13■□□□□ 0.81
HMGB1-202ENST00000339872 FAM50AQ14320 339 aaKnown RBP20.13■□□□□ 0.81
HMGB1-202ENST00000339872 MYOM3Q5VTT5 1437 aa20.11■□□□□ 0.81
HMGB1-202ENST00000339872 ERCC6L2Q5T890 1561 aa20.09■□□□□ 0.81
HMGB1-202ENST00000339872 PTPRGP23470 1445 aa20.09■□□□□ 0.81
HMGB1-202ENST00000339872 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.07■□□□□ 0.8
HMGB1-202ENST00000339872 CDK11AQ9UQ88 783 aaPredicted RBP20.06■□□□□ 0.8
HMGB1-202ENST00000339872 PTPN23Q9H3S7 1636 aa20.04■□□□□ 0.8
HMGB1-202ENST00000339872 TROQ12816 1431 aaPredicted RBP20.01■□□□□ 0.79
HMGB1-202ENST00000339872 ATP10BO94823 1461 aa20■□□□□ 0.79
HMGB1-202ENST00000339872 ADCY10Q96PN6 1610 aa19.99■□□□□ 0.79
HMGB1-202ENST00000339872 UACAQ9BZF9 1416 aa19.98■□□□□ 0.79
HMGB1-202ENST00000339872 KIF14Q15058 1648 aa19.97■□□□□ 0.79
HMGB1-202ENST00000339872 TCOF1Q13428 1488 aaKnown RBP19.96■□□□□ 0.79
HMGB1-202ENST00000339872 MIA2Q96PC5 1412 aa19.96■□□□□ 0.79
HMGB1-202ENST00000339872 ABCC2Q92887 1545 aa19.94■□□□□ 0.78
HMGB1-202ENST00000339872 ITSN2Q9NZM3 1697 aa19.93■□□□□ 0.78
HMGB1-202ENST00000339872 SETD5Q9C0A6 1442 aa19.93■□□□□ 0.78
HMGB1-202ENST00000339872 RAB3GAP2Q9H2M9 1393 aa19.93■□□□□ 0.78
HMGB1-202ENST00000339872 PLEKHD1A6NEE1 506 aa19.91■□□□□ 0.78
HMGB1-202ENST00000339872 DHX57Q6P158 1386 aaKnown RBP19.9■□□□□ 0.78
HMGB1-202ENST00000339872 PTPRKQ15262 1439 aa19.9■□□□□ 0.78
HMGB1-202ENST00000339872 OSCARQ8IYS5 282 aa19.86■□□□□ 0.77
HMGB1-202ENST00000339872 GPATCH8Q9UKJ3 1502 aaKnown RBP19.85■□□□□ 0.77
HMGB1-202ENST00000339872 CDC42BPAQ5VT25 1732 aa19.85■□□□□ 0.77
HMGB1-202ENST00000339872 UHRF1BP1LA0JNW5 1464 aa19.84■□□□□ 0.77
HMGB1-202ENST00000339872 ABCC10Q5T3U5 1492 aa19.84■□□□□ 0.77
HMGB1-202ENST00000339872 ZCCHC11Q5TAX3 1644 aaKnown RBP19.83■□□□□ 0.77
HMGB1-202ENST00000339872 HFM1A2PYH4 1435 aa19.82■□□□□ 0.76
HMGB1-202ENST00000339872 DNMT1P26358 1616 aaKnown RBP19.81■□□□□ 0.76
HMGB1-202ENST00000339872 CAMSAP2Q08AD1 1489 aa19.81■□□□□ 0.76
HMGB1-202ENST00000339872 CFDP1Q9UEE9 299 aaPredicted RBP19.81■□□□□ 0.76
HMGB1-202ENST00000339872 CLSPNQ9HAW4 1339 aa19.8■□□□□ 0.76
HMGB1-202ENST00000339872 ZNF644Q9H582 1327 aaPredicted RBP19.8■□□□□ 0.76
HMGB1-202ENST00000339872 DAPK1P53355 1430 aa19.78■□□□□ 0.76
HMGB1-202ENST00000339872 GCC2Q8IWJ2 1684 aa19.78■□□□□ 0.76
HMGB1-202ENST00000339872 KDM5BQ9UGL1 1544 aa19.78■□□□□ 0.76
HMGB1-202ENST00000339872 NAIPQ13075 1403 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms