RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 NAP1L5Q96NT1 182 aaPredicted RBP5.58□□□□□ -1.52
NEDD4-201ENST00000338963 CENPJQ9HC77 1338 aaPredicted RBP5.57□□□□□ -1.52
NEDD4-201ENST00000338963 CCER2I3L3R5 266 aa5.57□□□□□ -1.52
NEDD4-201ENST00000338963 IL27Q8NEV9 243 aa5.57□□□□□ -1.52
NEDD4-201ENST00000338963 L1TD1Q5T7N2 865 aaKnown RBP5.57□□□□□ -1.52
NEDD4-201ENST00000338963 KLHL34Q8N239 644 aa5.57□□□□□ -1.52
NEDD4-201ENST00000338963 RTN4Q9NQC3 1192 aaKnown RBP5.57□□□□□ -1.52
NEDD4-201ENST00000338963 A0A0U1RQG5 324 aaPredicted RBP5.56□□□□□ -1.52
NEDD4-201ENST00000338963 TRIM44Q96DX7 344 aaPredicted RBP5.56□□□□□ -1.52
NEDD4-201ENST00000338963 ARID4BQ4LE39 1312 aaPredicted RBP5.56□□□□□ -1.52
NEDD4-201ENST00000338963 FBXO3Q9UK99 471 aa5.56□□□□□ -1.52
NEDD4-201ENST00000338963 GSE1Q14687 1217 aa5.55□□□□□ -1.52
NEDD4-201ENST00000338963 EEA1Q15075 1411 aa5.55□□□□□ -1.52
NEDD4-201ENST00000338963 CANXP27824 592 aaKnown RBP5.55□□□□□ -1.52
NEDD4-201ENST00000338963 TPM2P07951 284 aa5.55□□□□□ -1.52
NEDD4-201ENST00000338963 BCCIPQ9P287 314 aaKnown RBP eCLIP5.55□□□□□ -1.52
NEDD4-201ENST00000338963 HSP90B1P14625 803 aaKnown RBP5.54□□□□□ -1.52
NEDD4-201ENST00000338963 PTMSP20962 102 aa5.54□□□□□ -1.52
NEDD4-201ENST00000338963 RSPH4AQ5TD94 716 aa5.54□□□□□ -1.52
NEDD4-201ENST00000338963 MTERF4Q7Z6M4 381 aaKnown RBP5.54□□□□□ -1.52
NEDD4-201ENST00000338963 SHROOM4Q9ULL8 1493 aa5.54□□□□□ -1.52
NEDD4-201ENST00000338963 BCL11BQ9C0K0 894 aaPredicted RBP5.54□□□□□ -1.52
NEDD4-201ENST00000338963 PNNQ9H307 717 aaKnown RBP5.54□□□□□ -1.52
NEDD4-201ENST00000338963 HMGB1P09429 215 aaKnown RBP5.54□□□□□ -1.52
NEDD4-201ENST00000338963 IPO4Q8TEX9 1081 aaKnown RBP5.53□□□□□ -1.52
NEDD4-201ENST00000338963 TAF3Q5VWG9 929 aa5.53□□□□□ -1.52
NEDD4-201ENST00000338963 NPM2Q86SE8 214 aaKnown RBP5.53□□□□□ -1.52
NEDD4-201ENST00000338963 LAS1LQ9Y4W2 734 aaKnown RBP5.52□□□□□ -1.53
NEDD4-201ENST00000338963 AMER1Q5JTC6 1135 aaPredicted RBP5.52□□□□□ -1.53
NEDD4-201ENST00000338963 ARID3AQ99856 593 aa5.52□□□□□ -1.53
NEDD4-201ENST00000338963 PDCL3Q9H2J4 239 aa5.51□□□□□ -1.53
NEDD4-201ENST00000338963 VGFO15240 615 aaPredicted RBP5.5□□□□□ -1.53
NEDD4-201ENST00000338963 CDK11BP21127 795 aaKnown RBP5.5□□□□□ -1.53
NEDD4-201ENST00000338963 NAP1L2Q9ULW6 460 aaPredicted RBP5.5□□□□□ -1.53
NEDD4-201ENST00000338963 WRNQ14191 1432 aaPredicted RBP eCLIP5.49□□□□□ -1.53
NEDD4-201ENST00000338963 ANP32CO43423 234 aa5.48□□□□□ -1.53
NEDD4-201ENST00000338963 SMAP1Q8IYB5 467 aaPredicted RBP5.47□□□□□ -1.53
NEDD4-201ENST00000338963 TULP1O00294 542 aaPredicted RBP5.47□□□□□ -1.53
NEDD4-201ENST00000338963 TIMELESSQ9UNS1 1208 aa5.47□□□□□ -1.53
NEDD4-201ENST00000338963 GOLGA6L3A6NEY3 463 aa5.46□□□□□ -1.54
NEDD4-201ENST00000338963 BBXQ8WY36 941 aaPredicted RBP5.46□□□□□ -1.54
NEDD4-201ENST00000338963 POLR3GLQ9BT43 218 aa5.46□□□□□ -1.54
NEDD4-201ENST00000338963 ISY1Q9ULR0 285 aaKnown RBP5.45□□□□□ -1.54
NEDD4-201ENST00000338963 AXDND1Q5T1B0 1012 aaPredicted RBP5.45□□□□□ -1.54
NEDD4-201ENST00000338963 CLCN1P35523 988 aa5.45□□□□□ -1.54
NEDD4-201ENST00000338963 UTP14CQ5TAP6 766 aaKnown RBP5.45□□□□□ -1.54
NEDD4-201ENST00000338963 TERF1P54274 439 aa5.45□□□□□ -1.54
NEDD4-201ENST00000338963 PTMAP06454 111 aaKnown RBP5.44□□□□□ -1.54
NEDD4-201ENST00000338963 BRPF3Q9ULD4 1205 aa5.44□□□□□ -1.54
NEDD4-201ENST00000338963 TCERG1O14776 1098 aaKnown RBP5.44□□□□□ -1.54
NEDD4-201ENST00000338963 ITGAEP38570 1179 aa5.44□□□□□ -1.54
NEDD4-201ENST00000338963 FTSJ3Q8IY81 847 aaKnown RBP5.44□□□□□ -1.54
NEDD4-201ENST00000338963 MS4A1P11836 297 aa5.44□□□□□ -1.54
NEDD4-201ENST00000338963 C14orf37Q86TY3 774 aa5.43□□□□□ -1.54
NEDD4-201ENST00000338963 CLGNO14967 610 aa5.43□□□□□ -1.54
NEDD4-201ENST00000338963 TEX2Q8IWB9 1127 aa5.43□□□□□ -1.54
NEDD4-201ENST00000338963 TSPYL1Q9H0U9 437 aa5.42□□□□□ -1.54
NEDD4-201ENST00000338963 CNKSR2Q8WXI2 1034 aa5.42□□□□□ -1.54
NEDD4-201ENST00000338963 KIF20AO95235 890 aa5.41□□□□□ -1.54
NEDD4-201ENST00000338963 PAXIP1Q6ZW49 1069 aaPredicted RBP5.41□□□□□ -1.54
NEDD4-201ENST00000338963 CHMP4AQ9BY43 222 aa5.4□□□□□ -1.55
NEDD4-201ENST00000338963 PAK3O75914 559 aaPredicted RBP5.4□□□□□ -1.55
NEDD4-201ENST00000338963 GTPBP4Q9BZE4 634 aaKnown RBP5.4□□□□□ -1.55
NEDD4-201ENST00000338963 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.39□□□□□ -1.55
NEDD4-201ENST00000338963 ZNF622Q969S3 477 aaKnown RBP eCLIP5.39□□□□□ -1.553e-6■■■□□ 16.2
NEDD4-201ENST00000338963 FRAT1Q92837 279 aaPredicted RBP5.38□□□□□ -1.55
NEDD4-201ENST00000338963 LETM1O95202 739 aaPredicted RBP5.38□□□□□ -1.55
NEDD4-201ENST00000338963 IRX3P78415 501 aaPredicted RBP5.37□□□□□ -1.55
NEDD4-201ENST00000338963 PRDM4Q9UKN5 801 aa5.37□□□□□ -1.55
NEDD4-201ENST00000338963 DNTTIP2Q5QJE6 756 aaKnown RBP5.36□□□□□ -1.55
NEDD4-201ENST00000338963 NFKBIBQ15653 356 aa5.36□□□□□ -1.55
NEDD4-201ENST00000338963 CLSTN1O94985 981 aa5.35□□□□□ -1.55
NEDD4-201ENST00000338963 CSPP1Q1MSJ5 1256 aa5.35□□□□□ -1.55
NEDD4-201ENST00000338963 STAC3Q96MF2 364 aa5.35□□□□□ -1.55
NEDD4-201ENST00000338963 BECN1Q14457 450 aa5.35□□□□□ -1.55
NEDD4-201ENST00000338963 CCDC9Q9Y3X0 531 aaKnown RBP5.35□□□□□ -1.55
NEDD4-201ENST00000338963 MRE11P49959 708 aa5.35□□□□□ -1.55
NEDD4-201ENST00000338963 HAP1P54257 671 aaPredicted RBP5.34□□□□□ -1.55
NEDD4-201ENST00000338963 HNRNPUQ00839 825 aaKnown RBP eCLIP5.34□□□□□ -1.55
NEDD4-201ENST00000338963 DNAJC2Q99543 621 aaKnown RBP5.34□□□□□ -1.55
NEDD4-201ENST00000338963 APPP05067 770 aa5.34□□□□□ -1.55
NEDD4-201ENST00000338963 CCDC66A2RUB6 948 aa5.34□□□□□ -1.55
NEDD4-201ENST00000338963 CALRP27797 417 aaKnown RBP5.34□□□□□ -1.56
NEDD4-201ENST00000338963 MCCP23508 829 aa5.33□□□□□ -1.56
NEDD4-201ENST00000338963 CHMP4BQ9H444 224 aaKnown RBP5.33□□□□□ -1.56
NEDD4-201ENST00000338963 CHRM1P11229 460 aaPredicted RBP5.33□□□□□ -1.56
NEDD4-201ENST00000338963 ZFP91Q96JP5 570 aaPredicted RBP5.33□□□□□ -1.56
NEDD4-201ENST00000338963 TNIKQ9UKE5 1360 aa5.33□□□□□ -1.56
NEDD4-201ENST00000338963 FAM193AP78312 1265 aa5.33□□□□□ -1.56
NEDD4-201ENST00000338963 DMTNQ08495 405 aa5.32□□□□□ -1.56
NEDD4-201ENST00000338963 GTF2E1P29083 439 aaPredicted RBP5.32□□□□□ -1.56
NEDD4-201ENST00000338963 RGS3P49796 1198 aa5.32□□□□□ -1.56
NEDD4-201ENST00000338963 PPP4R3BQ5MIZ7 849 aa5.32□□□□□ -1.56
NEDD4-201ENST00000338963 CEP120Q8N960 986 aa5.32□□□□□ -1.56
NEDD4-201ENST00000338963 TRIM52Q96A61 297 aa5.32□□□□□ -1.56
NEDD4-201ENST00000338963 PHF14O94880 888 aa5.32□□□□□ -1.56
NEDD4-201ENST00000338963 SLC20A2Q08357 652 aa5.31□□□□□ -1.56
NEDD4-201ENST00000338963 SAMD1Q6SPF0 538 aaPredicted RBP5.31□□□□□ -1.56
NEDD4-201ENST00000338963 SETQ01105 290 aaPredicted RBP5.31□□□□□ -1.56
NEDD4-201ENST00000338963 ESPNB1AK53 854 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms