RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 CECR2Q9BXF3 1484 aa21.61■■□□□ 1.05
NPHP3-201ENST00000337331 MSH5O43196 834 aa21.6■■□□□ 1.05
NPHP3-201ENST00000337331 PPP4R2Q9NY27 417 aa21.59■■□□□ 1.05
NPHP3-201ENST00000337331 ARXQ96QS3 562 aa21.57■■□□□ 1.04
NPHP3-201ENST00000337331 IL27Q8NEV9 243 aa21.57■■□□□ 1.04
NPHP3-201ENST00000337331 MRS2Q9HD23 443 aa21.51■■□□□ 1.03
NPHP3-201ENST00000337331 MTUS2Q5JR59 1369 aa21.51■■□□□ 1.03
NPHP3-201ENST00000337331 TMC1Q8TDI8 760 aa21.49■■□□□ 1.03
NPHP3-201ENST00000337331 EEA1Q15075 1411 aa21.49■■□□□ 1.03
NPHP3-201ENST00000337331 GOLGA3Q08378 1498 aa21.47■■□□□ 1.03
NPHP3-201ENST00000337331 TIMELESSQ9UNS1 1208 aa21.46■■□□□ 1.03
NPHP3-201ENST00000337331 PPM1GO15355 546 aaPredicted RBP21.43■■□□□ 1.02
NPHP3-201ENST00000337331 PKNOX2Q96KN3 472 aa21.42■■□□□ 1.02
NPHP3-201ENST00000337331 TNIKQ9UKE5 1360 aa21.42■■□□□ 1.02
NPHP3-201ENST00000337331 WRNQ14191 1432 aaPredicted RBP eCLIP21.41■■□□□ 1.02
NPHP3-201ENST00000337331 RRP7BPQ9NSQ0 103 aa21.41■■□□□ 1.02
NPHP3-201ENST00000337331 VSIG10Q8N0Z9 540 aa21.4■■□□□ 1.02
NPHP3-201ENST00000337331 KDM2AQ9Y2K7 1162 aa21.4■■□□□ 1.02
NPHP3-201ENST00000337331 NAP1L5Q96NT1 182 aaPredicted RBP21.39■■□□□ 1.02
NPHP3-201ENST00000337331 CHGAP10645 457 aaKnown RBP21.39■■□□□ 1.01
NPHP3-201ENST00000337331 SLC24A1O60721 1099 aa21.38■■□□□ 1.01
NPHP3-201ENST00000337331 EIF4G2P78344 907 aaKnown RBP eCLIP21.38■■□□□ 1.01
NPHP3-201ENST00000337331 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.38■■□□□ 1.012e-6■■□□□ 12
NPHP3-201ENST00000337331 IPO9Q96P70 1041 aaKnown RBP21.36■■□□□ 1.01
NPHP3-201ENST00000337331 SENP3-EIF4A1A0A087X0R7 540 aa21.36■■□□□ 1.01
NPHP3-201ENST00000337331 TSPY4P0CV99 314 aa21.35■■□□□ 1.01
NPHP3-201ENST00000337331 TSPY10P0CW01 314 aa21.35■■□□□ 1.01
NPHP3-201ENST00000337331 BAZ1AQ9NRL2 1556 aaPredicted RBP21.34■■□□□ 1.01
NPHP3-201ENST00000337331 UBE2Q2Q8WVN8 375 aa21.33■■□□□ 1.01
NPHP3-201ENST00000337331 MROH2BQ7Z745 1585 aa21.33■■□□□ 1
NPHP3-201ENST00000337331 PAK3O75914 559 aaPredicted RBP21.29■■□□□ 1
NPHP3-201ENST00000337331 SIN3AQ96ST3 1273 aa21.26■□□□□ 0.99
NPHP3-201ENST00000337331 CCER2I3L3R5 266 aa21.25■□□□□ 0.99
NPHP3-201ENST00000337331 CEP164Q9UPV0 1460 aa21.25■□□□□ 0.99
NPHP3-201ENST00000337331 BAZ1BQ9UIG0 1483 aaKnown RBP21.23■□□□□ 0.99
NPHP3-201ENST00000337331 ARID4BQ4LE39 1312 aaPredicted RBP21.23■□□□□ 0.99
NPHP3-201ENST00000337331 WDR43Q15061 677 aaKnown RBP eCLIP21.2■□□□□ 0.98
NPHP3-201ENST00000337331 DDRGK1Q96HY6 314 aa21.2■□□□□ 0.98
NPHP3-201ENST00000337331 RSPH6AQ9H0K4 717 aa21.2■□□□□ 0.98
NPHP3-201ENST00000337331 UPF2Q9HAU5 1272 aaKnown RBP21.2■□□□□ 0.98
NPHP3-201ENST00000337331 KIF27Q86VH2 1401 aa21.18■□□□□ 0.98
NPHP3-201ENST00000337331 SOGA1O94964 1423 aa21.17■□□□□ 0.98
NPHP3-201ENST00000337331 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.17■□□□□ 0.98
NPHP3-201ENST00000337331 CHMP7Q8WUX9 453 aaPredicted RBP21.17■□□□□ 0.98
NPHP3-201ENST00000337331 BRPF3Q9ULD4 1205 aa21.17■□□□□ 0.98
NPHP3-201ENST00000337331 HSP90AA1P07900 732 aaKnown RBP21.16■□□□□ 0.98
NPHP3-201ENST00000337331 STAG3Q9UJ98 1225 aa21.13■□□□□ 0.97
NPHP3-201ENST00000337331 PODXL2Q9NZ53 605 aa21.13■□□□□ 0.97
NPHP3-201ENST00000337331 RGL3Q3MIN7 710 aa21.11■□□□□ 0.97
NPHP3-201ENST00000337331 HSP90AA2PQ14568 343 aaPredicted RBP21.09■□□□□ 0.97
NPHP3-201ENST00000337331 GSE1Q14687 1217 aa21.09■□□□□ 0.97
NPHP3-201ENST00000337331 USP35Q9P2H5 1018 aa21.08■□□□□ 0.97
NPHP3-201ENST00000337331 NPM1P06748 294 aaKnown RBP eCLIP21.07■□□□□ 0.96
NPHP3-201ENST00000337331 CCNB3Q8WWL7 1395 aa21.06■□□□□ 0.96
NPHP3-201ENST00000337331 ESF1Q9H501 851 aaKnown RBP21.06■□□□□ 0.96
NPHP3-201ENST00000337331 WIZO95785 1651 aa21.06■□□□□ 0.96
NPHP3-201ENST00000337331 PLEKHD1A6NEE1 506 aa21.04■□□□□ 0.96
NPHP3-201ENST00000337331 PNNQ9H307 717 aaKnown RBP21.04■□□□□ 0.96
NPHP3-201ENST00000337331 CFDP1Q9UEE9 299 aaPredicted RBP21.03■□□□□ 0.96
NPHP3-201ENST00000337331 A0A0U1RQG5 324 aaPredicted RBP21■□□□□ 0.95
NPHP3-201ENST00000337331 ANP32BQ92688 251 aaKnown RBP21■□□□□ 0.95
NPHP3-201ENST00000337331 TRIM44Q96DX7 344 aaPredicted RBP20.99■□□□□ 0.95
NPHP3-201ENST00000337331 CARD11Q9BXL7 1154 aa20.98■□□□□ 0.95
NPHP3-201ENST00000337331 KANK4Q5T7N3 995 aaPredicted RBP20.96■□□□□ 0.95
NPHP3-201ENST00000337331 SLC4A3P48751 1232 aa20.94■□□□□ 0.94
NPHP3-201ENST00000337331 DHX57Q6P158 1386 aaKnown RBP20.94■□□□□ 0.94
NPHP3-201ENST00000337331 SMARCA4P51532 1647 aa20.93■□□□□ 0.94
NPHP3-201ENST00000337331 SENP3Q9H4L4 574 aaPredicted RBP20.93■□□□□ 0.94
NPHP3-201ENST00000337331 VPS8Q8N3P4 1428 aa20.93■□□□□ 0.94
NPHP3-201ENST00000337331 CCDC88BA6NC98 1476 aa20.93■□□□□ 0.94
NPHP3-201ENST00000337331 PLPPR3Q6T4P5 718 aa20.92■□□□□ 0.94
NPHP3-201ENST00000337331 SMARCA2P51531 1590 aa20.9■□□□□ 0.94
NPHP3-201ENST00000337331 CARMIL1Q5VZK9 1371 aa20.89■□□□□ 0.93
NPHP3-201ENST00000337331 ABCC8Q09428 1581 aa20.88■□□□□ 0.93
NPHP3-201ENST00000337331 ATAD2BQ9ULI0 1458 aa20.88■□□□□ 0.93
NPHP3-201ENST00000337331 KNSTRNQ9Y448 316 aa20.87■□□□□ 0.93
NPHP3-201ENST00000337331 FHAD1B1AJZ9 1412 aa20.86■□□□□ 0.93
NPHP3-201ENST00000337331 FRAT1Q92837 279 aaPredicted RBP20.85■□□□□ 0.93
NPHP3-201ENST00000337331 TCERG1O14776 1098 aaKnown RBP20.85■□□□□ 0.93
NPHP3-201ENST00000337331 L1TD1Q5T7N2 865 aaKnown RBP20.84■□□□□ 0.93
NPHP3-201ENST00000337331 ARID3AQ99856 593 aa20.84■□□□□ 0.93
NPHP3-201ENST00000337331 PDE4AP27815 886 aa20.83■□□□□ 0.92
NPHP3-201ENST00000337331 ZMYND15Q9H091 742 aa20.83■□□□□ 0.92
NPHP3-201ENST00000337331 CUX2O14529 1486 aa20.83■□□□□ 0.92
NPHP3-201ENST00000337331 RGS3P49796 1198 aa20.82■□□□□ 0.92
NPHP3-201ENST00000337331 TOP2AP11388 1531 aaKnown RBP20.82■□□□□ 0.92
NPHP3-201ENST00000337331 SETD5Q9C0A6 1442 aa20.8■□□□□ 0.92
NPHP3-201ENST00000337331 BECN1Q14457 450 aa20.8■□□□□ 0.92
NPHP3-201ENST00000337331 NFKBIBQ15653 356 aa20.79■□□□□ 0.92
NPHP3-201ENST00000337331 NEUROD2Q15784 382 aa20.79■□□□□ 0.92
NPHP3-201ENST00000337331 CDCA8Q53HL2 280 aa20.79■□□□□ 0.92
NPHP3-201ENST00000337331 GZF1Q9H116 711 aaPredicted RBP20.79■□□□□ 0.92
NPHP3-201ENST00000337331 TNNT2P45379 298 aaPredicted RBP20.77■□□□□ 0.92
NPHP3-201ENST00000337331 HSPA5P11021 654 aaKnown RBP20.75■□□□□ 0.91
NPHP3-201ENST00000337331 AMER1Q5JTC6 1135 aaPredicted RBP20.75■□□□□ 0.91
NPHP3-201ENST00000337331 MYH16Q9H6N6 1097 aa20.74■□□□□ 0.91
NPHP3-201ENST00000337331 CC2D1BQ5T0F9 858 aaKnown RBP20.74■□□□□ 0.91
NPHP3-201ENST00000337331 RAB3GAP2Q9H2M9 1393 aa20.74■□□□□ 0.91
NPHP3-201ENST00000337331 DCAF11Q8TEB1 546 aa20.74■□□□□ 0.91
NPHP3-201ENST00000337331 SLKQ9H2G2 1235 aaPredicted RBP20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms