RNA–Protein interactions for RNA: ENST00000334490.5

C9orf47-201, Transcript of chromosome 9 open reading frame 47, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene C9orf47, Length 4,829 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf47-201ENST00000334490 BCL11AQ9H165 835 aa20.54■□□□□ 0.88
C9orf47-201ENST00000334490 SOGA1O94964 1423 aa20.51■□□□□ 0.87
C9orf47-201ENST00000334490 PPP1R15AO75807 674 aaPredicted RBP20.5■□□□□ 0.87
C9orf47-201ENST00000334490 TDRD9Q8NDG6 1382 aaKnown RBP20.48■□□□□ 0.87
C9orf47-201ENST00000334490 RGL3Q3MIN7 710 aa20.48■□□□□ 0.87
C9orf47-201ENST00000334490 EIF4G1Q04637 1599 aaKnown RBP20.48■□□□□ 0.87
C9orf47-201ENST00000334490 CADPSQ9ULU8 1353 aa20.42■□□□□ 0.86
C9orf47-201ENST00000334490 TRHP20396 242 aaPredicted RBP20.42■□□□□ 0.86
C9orf47-201ENST00000334490 FAM9BQ8IZU0 186 aa20.41■□□□□ 0.86
C9orf47-201ENST00000334490 GTF3C3Q9Y5Q9 886 aa20.41■□□□□ 0.86
C9orf47-201ENST00000334490 HIRIP3Q9BW71 556 aaPredicted RBP20.4■□□□□ 0.86
C9orf47-201ENST00000334490 FHAD1B1AJZ9 1412 aa20.39■□□□□ 0.86
C9orf47-201ENST00000334490 CCNB3Q8WWL7 1395 aa20.38■□□□□ 0.85
C9orf47-201ENST00000334490 ABCC8Q09428 1581 aa20.38■□□□□ 0.85
C9orf47-201ENST00000334490 TMC1Q8TDI8 760 aa20.38■□□□□ 0.85
C9orf47-201ENST00000334490 SALL2Q9Y467 1007 aaPredicted RBP20.37■□□□□ 0.85
C9orf47-201ENST00000334490 SCAF1Q9H7N4 1312 aaKnown RBP20.37■□□□□ 0.85
C9orf47-201ENST00000334490 ACIN1Q9UKV3 1341 aaKnown RBP20.37■□□□□ 0.85
C9orf47-201ENST00000334490 EIF4G2P78344 907 aaKnown RBP eCLIP20.36■□□□□ 0.85
C9orf47-201ENST00000334490 HNRNPUQ00839 825 aaKnown RBP eCLIP20.35■□□□□ 0.85
C9orf47-201ENST00000334490 ATAD2BQ9ULI0 1458 aa20.35■□□□□ 0.85
C9orf47-201ENST00000334490 C14orf37Q86TY3 774 aa20.35■□□□□ 0.85
C9orf47-201ENST00000334490 WIZO95785 1651 aa20.33■□□□□ 0.84
C9orf47-201ENST00000334490 TOP2AP11388 1531 aaKnown RBP20.31■□□□□ 0.84
C9orf47-201ENST00000334490 PLEKHG5O94827 1062 aa20.3■□□□□ 0.84
C9orf47-201ENST00000334490 CARMIL2Q6F5E8 1435 aa20.3■□□□□ 0.84
C9orf47-201ENST00000334490 WDR43Q15061 677 aaKnown RBP eCLIP20.27■□□□□ 0.84
C9orf47-201ENST00000334490 MRS2Q9HD23 443 aa20.26■□□□□ 0.83
C9orf47-201ENST00000334490 MLECQ14165 292 aa20.23■□□□□ 0.83
C9orf47-201ENST00000334490 RTL5Q5HYW3 569 aaPredicted RBP20.23■□□□□ 0.83
C9orf47-201ENST00000334490 ZBTB7CA1YPR0 619 aa20.22■□□□□ 0.83
C9orf47-201ENST00000334490 CARD11Q9BXL7 1154 aa20.18■□□□□ 0.82
C9orf47-201ENST00000334490 SMARCA4P51532 1647 aa20.18■□□□□ 0.82
C9orf47-201ENST00000334490 SIN3AQ96ST3 1273 aa20.17■□□□□ 0.82
C9orf47-201ENST00000334490 A0A0G2JS52 829 aa20.16■□□□□ 0.82
C9orf47-201ENST00000334490 CDCA8Q53HL2 280 aa20.13■□□□□ 0.81
C9orf47-201ENST00000334490 GGT6Q6P531 493 aa20.13■□□□□ 0.81
C9orf47-201ENST00000334490 VPS8Q8N3P4 1428 aa20.13■□□□□ 0.81
C9orf47-201ENST00000334490 KANK4Q5T7N3 995 aaPredicted RBP20.13■□□□□ 0.81
C9orf47-201ENST00000334490 JPH4Q96JJ6 628 aa20.12■□□□□ 0.81
C9orf47-201ENST00000334490 POGKQ9P215 609 aa20.12■□□□□ 0.81
C9orf47-201ENST00000334490 FANCD2Q9BXW9 1451 aa20.11■□□□□ 0.81
C9orf47-201ENST00000334490 EFCAB2Q5VUJ9 269 aa20.11■□□□□ 0.81
C9orf47-201ENST00000334490 KANK1Q14678 1352 aa20.1■□□□□ 0.81
C9orf47-201ENST00000334490 FMN1Q68DA7 1419 aa20.1■□□□□ 0.81
C9orf47-201ENST00000334490 FKBP8Q14318 412 aa20.1■□□□□ 0.81
C9orf47-201ENST00000334490 HAP1P54257 671 aaPredicted RBP20.09■□□□□ 0.81
C9orf47-201ENST00000334490 KNSTRNQ9Y448 316 aa20.07■□□□□ 0.8
C9orf47-201ENST00000334490 RAPGEF2Q9Y4G8 1499 aa20.06■□□□□ 0.8
C9orf47-201ENST00000334490 MIER1Q8N108 512 aa20.05■□□□□ 0.8
C9orf47-201ENST00000334490 ARHGAP35Q9NRY4 1499 aa20.05■□□□□ 0.8
C9orf47-201ENST00000334490 DCAF11Q8TEB1 546 aa20.05■□□□□ 0.8
C9orf47-201ENST00000334490 PPM1GO15355 546 aaPredicted RBP20.04■□□□□ 0.8
C9orf47-201ENST00000334490 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.04■□□□□ 0.8
C9orf47-201ENST00000334490 LMOD2Q6P5Q4 547 aa20.02■□□□□ 0.8
C9orf47-201ENST00000334490 NPM2Q86SE8 214 aaKnown RBP20.02■□□□□ 0.8
C9orf47-201ENST00000334490 CFAP53Q96M91 514 aa20.01■□□□□ 0.79
C9orf47-201ENST00000334490 FHOD3Q2V2M9 1422 aa20■□□□□ 0.79
C9orf47-201ENST00000334490 HDGFP51858 240 aaKnown RBP20■□□□□ 0.79
C9orf47-201ENST00000334490 PKD2Q13563 968 aa19.98■□□□□ 0.79
C9orf47-201ENST00000334490 MYT1Q01538 1121 aa19.95■□□□□ 0.78
C9orf47-201ENST00000334490 SETD5Q9C0A6 1442 aa19.93■□□□□ 0.78
C9orf47-201ENST00000334490 HNRNPMP52272 730 aaKnown RBP eCLIP19.93■□□□□ 0.78
C9orf47-201ENST00000334490 CYB5RLQ6IPT4 315 aa19.93■□□□□ 0.78
C9orf47-201ENST00000334490 OSCARQ8IYS5 282 aa19.93■□□□□ 0.78
C9orf47-201ENST00000334490 CCDC136Q96JN2 1154 aa19.92■□□□□ 0.78
C9orf47-201ENST00000334490 ANP32AP39687 249 aaKnown RBP19.92■□□□□ 0.78
C9orf47-201ENST00000334490 FOXD1Q16676 465 aa19.92■□□□□ 0.78
C9orf47-201ENST00000334490 SENP3-EIF4A1A0A087X0R7 540 aa19.92■□□□□ 0.78
C9orf47-201ENST00000334490 KIF3BO15066 747 aa19.91■□□□□ 0.78
C9orf47-201ENST00000334490 NCAPD3P42695 1498 aa19.9■□□□□ 0.78
C9orf47-201ENST00000334490 SAFB2Q14151 953 aaKnown RBP eCLIP19.89■□□□□ 0.78
C9orf47-201ENST00000334490 NUP155O75694 1391 aa19.89■□□□□ 0.77
C9orf47-201ENST00000334490 TNNT2P45379 298 aaPredicted RBP19.89■□□□□ 0.77
C9orf47-201ENST00000334490 ANKRD30AQ9BXX3 1397 aa19.88■□□□□ 0.77
C9orf47-201ENST00000334490 TMF1P82094 1093 aa19.87■□□□□ 0.77
C9orf47-201ENST00000334490 SPAG9O60271 1321 aaKnown RBP19.86■□□□□ 0.77
C9orf47-201ENST00000334490 PTPRGP23470 1445 aa19.86■□□□□ 0.77
C9orf47-201ENST00000334490 RUSC2Q8N2Y8 1516 aa19.86■□□□□ 0.77
C9orf47-201ENST00000334490 UPF2Q9HAU5 1272 aaKnown RBP19.86■□□□□ 0.77
C9orf47-201ENST00000334490 SRPK2P78362 688 aaKnown RBP19.85■□□□□ 0.77
C9orf47-201ENST00000334490 NEUROD2Q15784 382 aa19.85■□□□□ 0.77
C9orf47-201ENST00000334490 STK26Q9P289 416 aa19.85■□□□□ 0.77
C9orf47-201ENST00000334490 TIMELESSQ9UNS1 1208 aa19.84■□□□□ 0.77
C9orf47-201ENST00000334490 NUDCQ9Y266 331 aa19.84■□□□□ 0.77
C9orf47-201ENST00000334490 MPHOSPH9Q99550 1183 aa19.84■□□□□ 0.77
C9orf47-201ENST00000334490 RSPH4AQ5TD94 716 aa19.83■□□□□ 0.77
C9orf47-201ENST00000334490 FGD5Q6ZNL6 1462 aa19.83■□□□□ 0.76
C9orf47-201ENST00000334490 IRX6P78412 446 aaPredicted RBP19.83■□□□□ 0.76
C9orf47-201ENST00000334490 HSP90AA1P07900 732 aaKnown RBP19.82■□□□□ 0.76
C9orf47-201ENST00000334490 CC2D1BQ5T0F9 858 aaKnown RBP19.82■□□□□ 0.76
C9orf47-201ENST00000334490 CCDC18Q5T9S5 1454 aa19.81■□□□□ 0.76
C9orf47-201ENST00000334490 GAPVD1Q14C86 1478 aa19.81■□□□□ 0.76
C9orf47-201ENST00000334490 RAD54L2Q9Y4B4 1467 aa19.81■□□□□ 0.76
C9orf47-201ENST00000334490 MYH16Q9H6N6 1097 aa19.81■□□□□ 0.76
C9orf47-201ENST00000334490 MAPK8IP3Q9UPT6 1336 aa19.81■□□□□ 0.76
C9orf47-201ENST00000334490 ARXQ96QS3 562 aa19.78■□□□□ 0.76
C9orf47-201ENST00000334490 RAB3GAP2Q9H2M9 1393 aa19.78■□□□□ 0.76
C9orf47-201ENST00000334490 IGF1RP08069 1367 aa19.78■□□□□ 0.76
C9orf47-201ENST00000334490 SOX12O15370 315 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms