RNA–Protein interactions for RNA: ENST00000324685.10

RNF40-201, Transcript of ring finger protein 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF40, Length 5,634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-201ENST00000324685 IRX6P78412 446 aaPredicted RBP27.75■■■□□ 2.03
RNF40-201ENST00000324685 GOLGA6L22H0YM25 854 aa27.73■■■□□ 2.03
RNF40-201ENST00000324685 TRIM44Q96DX7 344 aaPredicted RBP27.73■■■□□ 2.03
RNF40-201ENST00000324685 SCAF1Q9H7N4 1312 aaKnown RBP27.67■■■□□ 2.02
RNF40-201ENST00000324685 CLIP1P30622 1438 aa27.61■■■□□ 2.01
RNF40-201ENST00000324685 HIRIP3Q9BW71 556 aaPredicted RBP27.56■■■□□ 2
RNF40-201ENST00000324685 CFAP53Q96M91 514 aa27.55■■■□□ 2
RNF40-201ENST00000324685 CASC1Q6TDU7 716 aa27.54■■■□□ 2
RNF40-201ENST00000324685 RSF1Q96T23 1441 aaPredicted RBP27.54■■■□□ 2
RNF40-201ENST00000324685 CDCA8Q53HL2 280 aa27.51■■□□□ 1.99
RNF40-201ENST00000324685 PPM1GO15355 546 aaPredicted RBP27.5■■□□□ 1.99
RNF40-201ENST00000324685 RRP7BPQ9NSQ0 103 aa27.49■■□□□ 1.99
RNF40-201ENST00000324685 TNNT2P45379 298 aaPredicted RBP27.49■■□□□ 1.99
RNF40-201ENST00000324685 ZRSR1Q15695 479 aaKnown RBP27.49■■□□□ 1.99
RNF40-201ENST00000324685 PTMAP06454 111 aaKnown RBP27.48■■□□□ 1.99
RNF40-201ENST00000324685 PPP1R15AO75807 674 aaPredicted RBP27.46■■□□□ 1.99
RNF40-201ENST00000324685 ZCCHC6Q5VYS8 1495 aaKnown RBP27.46■■□□□ 1.99
RNF40-201ENST00000324685 CHMP7Q8WUX9 453 aaPredicted RBP27.45■■□□□ 1.98
RNF40-201ENST00000324685 ZBTB7CA1YPR0 619 aa27.44■■□□□ 1.98
RNF40-201ENST00000324685 A0A0G2JS52 829 aa27.42■■□□□ 1.98
RNF40-201ENST00000324685 KNSTRNQ9Y448 316 aa27.42■■□□□ 1.98
RNF40-201ENST00000324685 C14orf37Q86TY3 774 aa27.41■■□□□ 1.98
RNF40-201ENST00000324685 FTSJ3Q8IY81 847 aaKnown RBP27.4■■□□□ 1.98
RNF40-201ENST00000324685 GOLGA3Q08378 1498 aa27.4■■□□□ 1.98
RNF40-201ENST00000324685 EEA1Q15075 1411 aa27.4■■□□□ 1.98
RNF40-201ENST00000324685 ERICH6BQ5W0A0 696 aa27.38■■□□□ 1.97
RNF40-201ENST00000324685 DNTTIP2Q5QJE6 756 aaKnown RBP27.34■■□□□ 1.97
RNF40-201ENST00000324685 SUPT16HQ9Y5B9 1047 aaKnown RBP27.32■■□□□ 1.96
RNF40-201ENST00000324685 PLEKHD1A6NEE1 506 aa27.32■■□□□ 1.96
RNF40-201ENST00000324685 PPP4R2Q9NY27 417 aa27.31■■□□□ 1.96
RNF40-201ENST00000324685 CEP162Q5TB80 1403 aa27.3■■□□□ 1.96
RNF40-201ENST00000324685 CHMP4BQ9H444 224 aaKnown RBP27.29■■□□□ 1.96
RNF40-201ENST00000324685 RGL3Q3MIN7 710 aa27.28■■□□□ 1.96
RNF40-201ENST00000324685 MAPK8IP3Q9UPT6 1336 aa27.28■■□□□ 1.96
RNF40-201ENST00000324685 CARD11Q9BXL7 1154 aa27.27■■□□□ 1.96
RNF40-201ENST00000324685 NUDCQ9Y266 331 aa27.25■■□□□ 1.95
RNF40-201ENST00000324685 MS4A1P11836 297 aa27.22■■□□□ 1.95
RNF40-201ENST00000324685 GOLGA6L6A8MZA4 724 aa27.21■■□□□ 1.95
RNF40-201ENST00000324685 KCNH8Q96L42 1107 aa27.21■■□□□ 1.95
RNF40-201ENST00000324685 NOP58Q9Y2X3 529 aaKnown RBP27.2■■□□□ 1.95
RNF40-201ENST00000324685 NAP1L5Q96NT1 182 aaPredicted RBP27.2■■□□□ 1.94
RNF40-201ENST00000324685 PLEKHG5O94827 1062 aa27.19■■□□□ 1.94
RNF40-201ENST00000324685 CCDC180Q9P1Z9 1646 aa27.17■■□□□ 1.94
RNF40-201ENST00000324685 SENP3Q9H4L4 574 aaPredicted RBP27.17■■□□□ 1.94
RNF40-201ENST00000324685 CFDP1Q9UEE9 299 aaPredicted RBP27.16■■□□□ 1.94
RNF40-201ENST00000324685 LAS1LQ9Y4W2 734 aaKnown RBP27.16■■□□□ 1.94
RNF40-201ENST00000324685 HSP90AB1P08238 724 aaKnown RBP27.15■■□□□ 1.94
RNF40-201ENST00000324685 TPRNQ4KMQ1 711 aa27.14■■□□□ 1.94
RNF40-201ENST00000324685 RGS3P49796 1198 aa27.14■■□□□ 1.93
RNF40-201ENST00000324685 HAP1P54257 671 aaPredicted RBP27.14■■□□□ 1.93
RNF40-201ENST00000324685 NEUROD2Q15784 382 aa27.13■■□□□ 1.93
RNF40-201ENST00000324685 PNNQ9H307 717 aaKnown RBP27.1■■□□□ 1.93
RNF40-201ENST00000324685 FRAT1Q92837 279 aaPredicted RBP27.1■■□□□ 1.93
RNF40-201ENST00000324685 SENP3-EIF4A1A0A087X0R7 540 aa27.08■■□□□ 1.93
RNF40-201ENST00000324685 NRDCO43847 1150 aa27.08■■□□□ 1.93
RNF40-201ENST00000324685 PLCB2Q00722 1185 aa27.06■■□□□ 1.92
RNF40-201ENST00000324685 TNIKQ9UKE5 1360 aa27.06■■□□□ 1.92
RNF40-201ENST00000324685 CEP164Q9UPV0 1460 aa27.04■■□□□ 1.92
RNF40-201ENST00000324685 OS9Q13438 667 aaPredicted RBP27.03■■□□□ 1.92
RNF40-201ENST00000324685 POGKQ9P215 609 aa27.03■■□□□ 1.92
RNF40-201ENST00000324685 KIF27Q86VH2 1401 aa27.02■■□□□ 1.92
RNF40-201ENST00000324685 HSCBQ8IWL3 235 aa27.01■■□□□ 1.92
RNF40-201ENST00000324685 FGD1P98174 961 aa27.01■■□□□ 1.91
RNF40-201ENST00000324685 WRNQ14191 1432 aaPredicted RBP eCLIP27.01■■□□□ 1.91
RNF40-201ENST00000324685 L1TD1Q5T7N2 865 aaKnown RBP26.98■■□□□ 1.91
RNF40-201ENST00000324685 CC2D1BQ5T0F9 858 aaKnown RBP26.98■■□□□ 1.91
RNF40-201ENST00000324685 KCNJ4P48050 445 aa26.97■■□□□ 1.91
RNF40-201ENST00000324685 ARID4BQ4LE39 1312 aaPredicted RBP26.97■■□□□ 1.91
RNF40-201ENST00000324685 CFAP44Q96MT7 982 aa26.96■■□□□ 1.91
RNF40-201ENST00000324685 CHAF1AQ13111 956 aaPredicted RBP26.96■■□□□ 1.91
RNF40-201ENST00000324685 MYO15BQ96JP2 1530 aa26.96■■□□□ 1.91
RNF40-201ENST00000324685 TMF1P82094 1093 aa26.94■■□□□ 1.9
RNF40-201ENST00000324685 RTN4Q9NQC3 1192 aaKnown RBP26.94■■□□□ 1.9
RNF40-201ENST00000324685 GOLGA6L4A6NEF3 574 aa26.93■■□□□ 1.9
RNF40-201ENST00000324685 TULP1O00294 542 aaPredicted RBP26.93■■□□□ 1.9
RNF40-201ENST00000324685 U2SURPO15042 1029 aaKnown RBP26.93■■□□□ 1.9
RNF40-201ENST00000324685 SIN3AQ96ST3 1273 aa26.93■■□□□ 1.9
RNF40-201ENST00000324685 MCCP23508 829 aa26.92■■□□□ 1.9
RNF40-201ENST00000324685 B4GALNT3Q6L9W6 998 aa26.9■■□□□ 1.9
RNF40-201ENST00000324685 MSNP26038 577 aaKnown RBP26.88■■□□□ 1.89
RNF40-201ENST00000324685 NAP1L2Q9ULW6 460 aaPredicted RBP26.87■■□□□ 1.89
RNF40-201ENST00000324685 TIMELESSQ9UNS1 1208 aa26.87■■□□□ 1.89
RNF40-201ENST00000324685 CCER2I3L3R5 266 aa26.86■■□□□ 1.89
RNF40-201ENST00000324685 RB1CC1Q8TDY2 1594 aa26.84■■□□□ 1.89
RNF40-201ENST00000324685 TAOK2Q9UL54 1235 aa26.84■■□□□ 1.89
RNF40-201ENST00000324685 NPHP1O15259 732 aa26.83■■□□□ 1.89
RNF40-201ENST00000324685 CCNB3Q8WWL7 1395 aa26.83■■□□□ 1.89
RNF40-201ENST00000324685 LMOD2Q6P5Q4 547 aa26.82■■□□□ 1.88
RNF40-201ENST00000324685 GOLGA2Q08379 1002 aa26.81■■□□□ 1.88
RNF40-201ENST00000324685 KANK1Q14678 1352 aa26.81■■□□□ 1.88
RNF40-201ENST00000324685 PTMSP20962 102 aa26.8■■□□□ 1.88
RNF40-201ENST00000324685 FHAD1B1AJZ9 1412 aa26.8■■□□□ 1.88
RNF40-201ENST00000324685 BAZ1BQ9UIG0 1483 aaKnown RBP26.79■■□□□ 1.88
RNF40-201ENST00000324685 DCAF11Q8TEB1 546 aa26.76■■□□□ 1.87
RNF40-201ENST00000324685 DRC7Q8IY82 874 aa26.75■■□□□ 1.87
RNF40-201ENST00000324685 MORC1Q86VD1 984 aa26.74■■□□□ 1.87
RNF40-201ENST00000324685 DEKP35659 375 aaKnown RBP26.73■■□□□ 1.87
RNF40-201ENST00000324685 HDGFP51858 240 aaKnown RBP26.71■■□□□ 1.87
RNF40-201ENST00000324685 IPO8O15397 1037 aaKnown RBP26.69■■□□□ 1.86
RNF40-201ENST00000324685 KTN1Q86UP2 1357 aaKnown RBP26.69■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms