RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 ERICH6BQ5W0A0 696 aa22.91■■□□□ 1.26
SYNPO-201ENST00000307662 GOLGA3Q08378 1498 aa22.89■■□□□ 1.26
SYNPO-201ENST00000307662 MTUS2Q5JR59 1369 aa22.88■■□□□ 1.25
SYNPO-201ENST00000307662 NOP58Q9Y2X3 529 aaKnown RBP22.88■■□□□ 1.25
SYNPO-201ENST00000307662 CEP162Q5TB80 1403 aa22.87■■□□□ 1.25
SYNPO-201ENST00000307662 PPP4R2Q9NY27 417 aa22.87■■□□□ 1.25
SYNPO-201ENST00000307662 CHGAP10645 457 aaKnown RBP22.86■■□□□ 1.25
SYNPO-201ENST00000307662 GOLGA6L22H0YM25 854 aa22.85■■□□□ 1.25
SYNPO-201ENST00000307662 KDM2AQ9Y2K7 1162 aa22.83■■□□□ 1.25
SYNPO-201ENST00000307662 MYH16Q9H6N6 1097 aa22.83■■□□□ 1.25
SYNPO-201ENST00000307662 RTN4Q9NQC3 1192 aaKnown RBP22.82■■□□□ 1.24
SYNPO-201ENST00000307662 NACADO15069 1562 aa22.81■■□□□ 1.24
SYNPO-201ENST00000307662 TNNT2P45379 298 aaPredicted RBP22.81■■□□□ 1.24
SYNPO-201ENST00000307662 WRNQ14191 1432 aaPredicted RBP eCLIP22.79■■□□□ 1.24
SYNPO-201ENST00000307662 LAS1LQ9Y4W2 734 aaKnown RBP22.79■■□□□ 1.24
SYNPO-201ENST00000307662 NCLP19338 710 aaKnown RBP22.78■■□□□ 1.24
SYNPO-201ENST00000307662 TSPY4P0CV99 314 aa22.76■■□□□ 1.23
SYNPO-201ENST00000307662 TSPY10P0CW01 314 aa22.76■■□□□ 1.23
SYNPO-201ENST00000307662 TNIKQ9UKE5 1360 aa22.76■■□□□ 1.23
SYNPO-201ENST00000307662 NAP1L5Q96NT1 182 aaPredicted RBP22.76■■□□□ 1.23
SYNPO-201ENST00000307662 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.73■■□□□ 1.23
SYNPO-201ENST00000307662 PTMAP06454 111 aaKnown RBP22.69■■□□□ 1.22
SYNPO-201ENST00000307662 STAG3Q9UJ98 1225 aa22.69■■□□□ 1.22
SYNPO-201ENST00000307662 DEKP35659 375 aaKnown RBP22.69■■□□□ 1.22
SYNPO-201ENST00000307662 NPM1P06748 294 aaKnown RBP eCLIP22.68■■□□□ 1.22
SYNPO-201ENST00000307662 CEP164Q9UPV0 1460 aa22.67■■□□□ 1.22
SYNPO-201ENST00000307662 ESF1Q9H501 851 aaKnown RBP22.66■■□□□ 1.22
SYNPO-201ENST00000307662 RRP7BPQ9NSQ0 103 aa22.66■■□□□ 1.22
SYNPO-201ENST00000307662 BAZ1BQ9UIG0 1483 aaKnown RBP22.66■■□□□ 1.22
SYNPO-201ENST00000307662 CHMP7Q8WUX9 453 aaPredicted RBP22.66■■□□□ 1.22
SYNPO-201ENST00000307662 RBM19Q9Y4C8 960 aaKnown RBP22.64■■□□□ 1.22
SYNPO-201ENST00000307662 KIF27Q86VH2 1401 aa22.63■■□□□ 1.21
SYNPO-201ENST00000307662 DNTTIP2Q5QJE6 756 aaKnown RBP22.63■■□□□ 1.21
SYNPO-201ENST00000307662 SENP3-EIF4A1A0A087X0R7 540 aa22.61■■□□□ 1.21
SYNPO-201ENST00000307662 B4GALNT3Q6L9W6 998 aa22.61■■□□□ 1.21
SYNPO-201ENST00000307662 BAZ1AQ9NRL2 1556 aaPredicted RBP22.57■■□□□ 1.2
SYNPO-201ENST00000307662 RGS3P49796 1198 aa22.55■■□□□ 1.2
SYNPO-201ENST00000307662 CASC1Q6TDU7 716 aa22.52■■□□□ 1.2
SYNPO-201ENST00000307662 FTSJ3Q8IY81 847 aaKnown RBP22.51■■□□□ 1.19
SYNPO-201ENST00000307662 CCER2I3L3R5 266 aa22.5■■□□□ 1.19
SYNPO-201ENST00000307662 KNSTRNQ9Y448 316 aa22.5■■□□□ 1.19
SYNPO-201ENST00000307662 L1TD1Q5T7N2 865 aaKnown RBP22.49■■□□□ 1.19
SYNPO-201ENST00000307662 SIN3AQ96ST3 1273 aa22.49■■□□□ 1.19
SYNPO-201ENST00000307662 CFAP53Q96M91 514 aa22.49■■□□□ 1.19
SYNPO-201ENST00000307662 PLEKHD1A6NEE1 506 aa22.48■■□□□ 1.19
SYNPO-201ENST00000307662 CECR2Q9BXF3 1484 aa22.48■■□□□ 1.19
SYNPO-201ENST00000307662 CDCA8Q53HL2 280 aa22.47■■□□□ 1.19
SYNPO-201ENST00000307662 CARD11Q9BXL7 1154 aa22.46■■□□□ 1.19
SYNPO-201ENST00000307662 CDK11BP21127 795 aaKnown RBP22.45■■□□□ 1.18
SYNPO-201ENST00000307662 ZRSR1Q15695 479 aaKnown RBP22.44■■□□□ 1.18
SYNPO-201ENST00000307662 HSP90AB1P08238 724 aaKnown RBP22.42■■□□□ 1.18
SYNPO-201ENST00000307662 TSHZ2Q9NRE2 1034 aa22.4■■□□□ 1.18
SYNPO-201ENST00000307662 RGL3Q3MIN7 710 aa22.39■■□□□ 1.18
SYNPO-201ENST00000307662 CFDP1Q9UEE9 299 aaPredicted RBP22.38■■□□□ 1.17
SYNPO-201ENST00000307662 TPRNQ4KMQ1 711 aa22.37■■□□□ 1.17
SYNPO-201ENST00000307662 FRAT1Q92837 279 aaPredicted RBP22.36■■□□□ 1.17
SYNPO-201ENST00000307662 TIMELESSQ9UNS1 1208 aa22.36■■□□□ 1.17
SYNPO-201ENST00000307662 PLCB2Q00722 1185 aa22.35■■□□□ 1.17
SYNPO-201ENST00000307662 HSCBQ8IWL3 235 aa22.34■■□□□ 1.17
SYNPO-201ENST00000307662 MSNP26038 577 aaKnown RBP22.34■■□□□ 1.17
SYNPO-201ENST00000307662 NEUROD2Q15784 382 aa22.34■■□□□ 1.17
SYNPO-201ENST00000307662 SOGA1O94964 1423 aa22.33■■□□□ 1.17
SYNPO-201ENST00000307662 MS4A1P11836 297 aa22.33■■□□□ 1.16
SYNPO-201ENST00000307662 KCNH8Q96L42 1107 aa22.33■■□□□ 1.16
SYNPO-201ENST00000307662 CCNB3Q8WWL7 1395 aa22.32■■□□□ 1.16
SYNPO-201ENST00000307662 CHMP4BQ9H444 224 aaKnown RBP22.31■■□□□ 1.16
SYNPO-201ENST00000307662 FHAD1B1AJZ9 1412 aa22.31■■□□□ 1.16
SYNPO-201ENST00000307662 MAPK8IP3Q9UPT6 1336 aa22.29■■□□□ 1.16
SYNPO-201ENST00000307662 GOLGA6L6A8MZA4 724 aa22.27■■□□□ 1.16
SYNPO-201ENST00000307662 CHAF1AQ13111 956 aaPredicted RBP22.27■■□□□ 1.16
SYNPO-201ENST00000307662 CC2D1BQ5T0F9 858 aaKnown RBP22.26■■□□□ 1.15
SYNPO-201ENST00000307662 CARMIL1Q5VZK9 1371 aa22.25■■□□□ 1.15
SYNPO-201ENST00000307662 PLPPR3Q6T4P5 718 aa22.24■■□□□ 1.15
SYNPO-201ENST00000307662 NUDCQ9Y266 331 aa22.24■■□□□ 1.15
SYNPO-201ENST00000307662 TCERG1O14776 1098 aaKnown RBP22.22■■□□□ 1.15
SYNPO-201ENST00000307662 MROH2BQ7Z745 1585 aa22.22■■□□□ 1.15
SYNPO-201ENST00000307662 VPS8Q8N3P4 1428 aa22.2■■□□□ 1.14
SYNPO-201ENST00000307662 CUX2O14529 1486 aa22.2■■□□□ 1.14
SYNPO-201ENST00000307662 NRDCO43847 1150 aa22.2■■□□□ 1.14
SYNPO-201ENST00000307662 CCDC88BA6NC98 1476 aa22.19■■□□□ 1.14
SYNPO-201ENST00000307662 SPRYD3Q8NCJ5 442 aa22.19■■□□□ 1.14
SYNPO-201ENST00000307662 IPO9Q96P70 1041 aaKnown RBP22.19■■□□□ 1.14
SYNPO-201ENST00000307662 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.19■■□□□ 1.14
SYNPO-201ENST00000307662 PNNQ9H307 717 aaKnown RBP22.18■■□□□ 1.14
SYNPO-201ENST00000307662 HSPA5P11021 654 aaKnown RBP22.16■■□□□ 1.14
SYNPO-201ENST00000307662 ARID4BQ4LE39 1312 aaPredicted RBP22.15■■□□□ 1.14
SYNPO-201ENST00000307662 PTMSP20962 102 aa22.15■■□□□ 1.14
SYNPO-201ENST00000307662 SETD5Q9C0A6 1442 aa22.13■■□□□ 1.13
SYNPO-201ENST00000307662 TMF1P82094 1093 aa22.12■■□□□ 1.13
SYNPO-201ENST00000307662 GBP4Q96PP9 640 aa22.12■■□□□ 1.13
SYNPO-201ENST00000307662 SENP3Q9H4L4 574 aaPredicted RBP22.11■■□□□ 1.13
SYNPO-201ENST00000307662 ZBTB7CA1YPR0 619 aa22.11■■□□□ 1.13
SYNPO-201ENST00000307662 PPP1R15AO75807 674 aaPredicted RBP22.11■■□□□ 1.13
SYNPO-201ENST00000307662 RCAN3Q9UKA8 241 aa22.11■■□□□ 1.13
SYNPO-201ENST00000307662 GOLGA6L4A6NEF3 574 aa22.1■■□□□ 1.13
SYNPO-201ENST00000307662 CFAP44Q96MT7 982 aa22.1■■□□□ 1.13
SYNPO-201ENST00000307662 ABCC8Q09428 1581 aa22.09■■□□□ 1.13
SYNPO-201ENST00000307662 C14orf37Q86TY3 774 aa22.08■■□□□ 1.13
SYNPO-201ENST00000307662 GZF1Q9H116 711 aaPredicted RBP22.07■■□□□ 1.12
SYNPO-201ENST00000307662 MCCP23508 829 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms