RNA–Protein interactions for RNA: ENST00000303406.4

HOXC4-201, Transcript of homeobox C4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC4, Length 1,524 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4-201ENST00000303406 FHAD1B1AJZ9 1412 aa29.69■■■□□ 2.34
HOXC4-201ENST00000303406 TTBK1Q5TCY1 1321 aaPredicted RBP29.69■■■□□ 2.34
HOXC4-201ENST00000303406 THOC2Q8NI27 1593 aaKnown RBP29.64■■■□□ 2.34
HOXC4-201ENST00000303406 GRIN2BQ13224 1484 aa29.63■■■□□ 2.33
HOXC4-201ENST00000303406 ADAMTS12P58397 1594 aa29.62■■■□□ 2.33
HOXC4-201ENST00000303406 ERCC6Q03468 1493 aa29.62■■■□□ 2.33
HOXC4-201ENST00000303406 AQRO60306 1485 aaKnown RBP eCLIP29.59■■■□□ 2.33
HOXC4-201ENST00000303406 TIAM1Q13009 1591 aa29.58■■■□□ 2.33
HOXC4-201ENST00000303406 SAMD9Q5K651 1589 aa29.58■■■□□ 2.33
HOXC4-201ENST00000303406 CFAP43Q8NDM7 1665 aa29.52■■■□□ 2.32
HOXC4-201ENST00000303406 FYCO1Q9BQS8 1478 aa29.52■■■□□ 2.32
HOXC4-201ENST00000303406 PCF11O94913 1555 aaKnown RBP29.51■■■□□ 2.31
HOXC4-201ENST00000303406 KANK4Q5T7N3 995 aaPredicted RBP29.5■■■□□ 2.31
HOXC4-201ENST00000303406 CASKIN1Q8WXD9 1431 aa29.49■■■□□ 2.31
HOXC4-201ENST00000303406 FMN1Q68DA7 1419 aa29.48■■■□□ 2.31
HOXC4-201ENST00000303406 FHOD3Q2V2M9 1422 aa29.47■■■□□ 2.31
HOXC4-201ENST00000303406 RRBP1Q9P2E9 1410 aaKnown RBP29.47■■■□□ 2.31
HOXC4-201ENST00000303406 ZNF608Q9ULD9 1512 aaPredicted RBP29.47■■■□□ 2.31
HOXC4-201ENST00000303406 EIF4G3O43432 1585 aaKnown RBP29.45■■■□□ 2.3
HOXC4-201ENST00000303406 LRRC9Q6ZRR7 1453 aa29.41■■■□□ 2.3
HOXC4-201ENST00000303406 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.4■■■□□ 2.3
HOXC4-201ENST00000303406 CCER1Q8TC90 406 aaPredicted RBP29.4■■■□□ 2.3
HOXC4-201ENST00000303406 IQGAP2Q13576 1575 aa29.39■■■□□ 2.29
HOXC4-201ENST00000303406 SNAPC4Q5SXM2 1469 aa29.36■■■□□ 2.29
HOXC4-201ENST00000303406 MAGI1Q96QZ7 1491 aaPredicted RBP29.34■■■□□ 2.29
HOXC4-201ENST00000303406 P3H3Q8IVL6 736 aa29.33■■■□□ 2.29
HOXC4-201ENST00000303406 UGGT2Q9NYU1 1516 aa29.3■■■□□ 2.28
HOXC4-201ENST00000303406 CCNB3Q8WWL7 1395 aa29.28■■■□□ 2.28
HOXC4-201ENST00000303406 HNRNPUL2Q1KMD3 747 aaKnown RBP29.26■■■□□ 2.27
HOXC4-201ENST00000303406 GRIN2AQ12879 1464 aa29.26■■■□□ 2.27
HOXC4-201ENST00000303406 KIAA0586Q9BVV6 1533 aa29.25■■■□□ 2.27
HOXC4-201ENST00000303406 SYNJ2O15056 1496 aa29.2■■■□□ 2.27
HOXC4-201ENST00000303406 CCDC18Q5T9S5 1454 aa29.14■■■□□ 2.26
HOXC4-201ENST00000303406 LRRIQ1Q96JM4 1722 aa29.14■■■□□ 2.25
HOXC4-201ENST00000303406 HECW1Q76N89 1606 aa29.13■■■□□ 2.25
HOXC4-201ENST00000303406 PHLDB1Q86UU1 1377 aa29.12■■■□□ 2.25
HOXC4-201ENST00000303406 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.11■■■□□ 2.252e-6■■■■■ 41.1
HOXC4-201ENST00000303406 KIAA0556O60303 1618 aa29.1■■■□□ 2.25
HOXC4-201ENST00000303406 EHBP1L1Q8N3D4 1523 aa29.08■■■□□ 2.25
HOXC4-201ENST00000303406 ATP1B4Q9UN42 357 aaPredicted RBP29.08■■■□□ 2.25
HOXC4-201ENST00000303406 DISP1Q96F81 1524 aa29.06■■■□□ 2.24
HOXC4-201ENST00000303406 NUP160Q12769 1436 aa29.05■■■□□ 2.24
HOXC4-201ENST00000303406 CEP170Q5SW79 1584 aa29.05■■■□□ 2.24
HOXC4-201ENST00000303406 CLSPNQ9HAW4 1339 aa29.03■■■□□ 2.24
HOXC4-201ENST00000303406 MTUS2Q5JR59 1369 aa29.02■■■□□ 2.24
HOXC4-201ENST00000303406 CHMP7Q8WUX9 453 aaPredicted RBP29■■■□□ 2.23
HOXC4-201ENST00000303406 SUPT6HQ7KZ85 1726 aaKnown RBP29■■■□□ 2.23
HOXC4-201ENST00000303406 EPRSP07814 1512 aaKnown RBP28.96■■■□□ 2.23
HOXC4-201ENST00000303406 ARHGEF11O15085 1522 aa28.95■■■□□ 2.23
HOXC4-201ENST00000303406 FGD6Q6ZV73 1430 aa28.93■■■□□ 2.22
HOXC4-201ENST00000303406 NCOA2Q15596 1464 aa28.92■■■□□ 2.22
HOXC4-201ENST00000303406 DHX57Q6P158 1386 aaKnown RBP28.91■■■□□ 2.22
HOXC4-201ENST00000303406 RAPGEF6Q8TEU7 1601 aa28.88■■■□□ 2.21
HOXC4-201ENST00000303406 MAGI3Q5TCQ9 1506 aa28.88■■■□□ 2.21
HOXC4-201ENST00000303406 MYOM3Q5VTT5 1437 aa28.88■■■□□ 2.21
HOXC4-201ENST00000303406 CARMIL2Q6F5E8 1435 aa28.85■■■□□ 2.21
HOXC4-201ENST00000303406 SETD5Q9C0A6 1442 aa28.83■■■□□ 2.21
HOXC4-201ENST00000303406 FAM50AQ14320 339 aaKnown RBP28.8■■■□□ 2.2
HOXC4-201ENST00000303406 NUP153P49790 1475 aaKnown RBP28.79■■■□□ 2.2
HOXC4-201ENST00000303406 CDK13Q14004 1512 aaKnown RBP28.79■■■□□ 2.2
HOXC4-201ENST00000303406 RAB3GAP2Q9H2M9 1393 aa28.78■■■□□ 2.2
HOXC4-201ENST00000303406 TCOF1Q13428 1488 aaKnown RBP28.76■■■□□ 2.2
HOXC4-201ENST00000303406 FBLN2P98095 1184 aa28.76■■■□□ 2.19
HOXC4-201ENST00000303406 JPH4Q96JJ6 628 aa28.76■■■□□ 2.19
HOXC4-201ENST00000303406 ITGAEP38570 1179 aa28.74■■■□□ 2.19
HOXC4-201ENST00000303406 PTPN23Q9H3S7 1636 aa28.74■■■□□ 2.19
HOXC4-201ENST00000303406 MIA2Q96PC5 1412 aa28.73■■■□□ 2.19
HOXC4-201ENST00000303406 CHD1O14646 1710 aa28.69■■■□□ 2.18
HOXC4-201ENST00000303406 CDK11AQ9UQ88 783 aaPredicted RBP28.65■■■□□ 2.18
HOXC4-201ENST00000303406 ABCA8O94911 1581 aa28.65■■■□□ 2.18
HOXC4-201ENST00000303406 HFM1A2PYH4 1435 aa28.62■■■□□ 2.17
HOXC4-201ENST00000303406 SHROOM2Q13796 1616 aa28.61■■■□□ 2.17
HOXC4-201ENST00000303406 PLB1Q6P1J6 1458 aa28.61■■■□□ 2.17
HOXC4-201ENST00000303406 ADCY10Q96PN6 1610 aa28.6■■■□□ 2.17
HOXC4-201ENST00000303406 TROQ12816 1431 aaPredicted RBP28.59■■■□□ 2.17
HOXC4-201ENST00000303406 PTPRKQ15262 1439 aa28.58■■■□□ 2.17
HOXC4-201ENST00000303406 AKNAQ7Z591 1439 aa28.58■■■□□ 2.17
HOXC4-201ENST00000303406 MAPKBP1O60336 1514 aa28.58■■■□□ 2.16
HOXC4-201ENST00000303406 PRG4Q92954 1404 aaPredicted RBP28.54■■■□□ 2.16
HOXC4-201ENST00000303406 ZNF316A6NFI3 1004 aaPredicted RBP28.51■■■□□ 2.15
HOXC4-201ENST00000303406 ITSN2Q9NZM3 1697 aa28.5■■■□□ 2.15
HOXC4-201ENST00000303406 NAIPQ13075 1403 aa28.49■■■□□ 2.15
HOXC4-201ENST00000303406 GCC2Q8IWJ2 1684 aa28.49■■■□□ 2.15
HOXC4-201ENST00000303406 PTPRGP23470 1445 aa28.45■■■□□ 2.14
HOXC4-201ENST00000303406 ARID3CA6NKF2 412 aa28.43■■■□□ 2.14
HOXC4-201ENST00000303406 UACAQ9BZF9 1416 aa28.43■■■□□ 2.14
HOXC4-201ENST00000303406 DNMT1P26358 1616 aaKnown RBP28.42■■■□□ 2.14
HOXC4-201ENST00000303406 ATP10BO94823 1461 aa28.42■■■□□ 2.14
HOXC4-201ENST00000303406 CLASP1Q7Z460 1538 aa28.42■■■□□ 2.14
HOXC4-201ENST00000303406 ACIN1Q9UKV3 1341 aaKnown RBP28.39■■■□□ 2.14
HOXC4-201ENST00000303406 ROCK1Q13464 1354 aa28.38■■■□□ 2.13
HOXC4-201ENST00000303406 KIF14Q15058 1648 aa28.38■■■□□ 2.13
HOXC4-201ENST00000303406 TIMELESSQ9UNS1 1208 aa28.37■■■□□ 2.13
HOXC4-201ENST00000303406 GPATCH8Q9UKJ3 1502 aaKnown RBP28.37■■■□□ 2.13
HOXC4-201ENST00000303406 DAPK1P53355 1430 aa28.36■■■□□ 2.13
HOXC4-201ENST00000303406 DIEXFQ68CQ4 756 aaKnown RBP28.33■■■□□ 2.13
HOXC4-201ENST00000303406 ABCC10Q5T3U5 1492 aa28.33■■■□□ 2.13
HOXC4-201ENST00000303406 PLEKHD1A6NEE1 506 aa28.33■■■□□ 2.13
HOXC4-201ENST00000303406 ABCC5O15440 1437 aa28.31■■■□□ 2.12
HOXC4-201ENST00000303406 CAMSAP2Q08AD1 1489 aa28.3■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms