RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 KIF13AQ9H1H9 1805 aa26.11■■□□□ 1.77
CCDC88B-201ENST00000301897 NPM1P06748 294 aaKnown RBP eCLIP26.07■■□□□ 1.76
CCDC88B-201ENST00000301897 KIAA0586Q9BVV6 1533 aa26.03■■□□□ 1.76
CCDC88B-201ENST00000301897 KIF27Q86VH2 1401 aa26.02■■□□□ 1.76
CCDC88B-201ENST00000301897 CUL7Q14999 1698 aa26.02■■□□□ 1.76
CCDC88B-201ENST00000301897 MAPKBP1O60336 1514 aa26.01■■□□□ 1.75
CCDC88B-201ENST00000301897 ABCC10Q5T3U5 1492 aa26■■□□□ 1.75
CCDC88B-201ENST00000301897 IGF1RP08069 1367 aa25.99■■□□□ 1.75
CCDC88B-201ENST00000301897 FAM69CQ0P6D2 419 aa25.97■■□□□ 1.75
CCDC88B-201ENST00000301897 ADCY10Q96PN6 1610 aa25.95■■□□□ 1.74
CCDC88B-201ENST00000301897 DIP2BQ9P265 1576 aa25.9■■□□□ 1.74
CCDC88B-201ENST00000301897 CARMIL1Q5VZK9 1371 aa25.83■■□□□ 1.73
CCDC88B-201ENST00000301897 PTPRGP23470 1445 aa25.81■■□□□ 1.72
CCDC88B-201ENST00000301897 CARMIL2Q6F5E8 1435 aa25.81■■□□□ 1.72
CCDC88B-201ENST00000301897 TNIKQ9UKE5 1360 aa25.76■■□□□ 1.71
CCDC88B-201ENST00000301897 KDM6BO15054 1643 aa25.76■■□□□ 1.71
CCDC88B-201ENST00000301897 IQGAP2Q13576 1575 aa25.73■■□□□ 1.71
CCDC88B-201ENST00000301897 ABCC2Q92887 1545 aa25.72■■□□□ 1.71
CCDC88B-201ENST00000301897 TSPOAP1O95153 1857 aa25.71■■□□□ 1.71
CCDC88B-201ENST00000301897 PLB1Q6P1J6 1458 aa25.67■■□□□ 1.7
CCDC88B-201ENST00000301897 UHRF1BP1LA0JNW5 1464 aa25.66■■□□□ 1.7
CCDC88B-201ENST00000301897 TTBK1Q5TCY1 1321 aaPredicted RBP25.65■■□□□ 1.7
CCDC88B-201ENST00000301897 ASXL2Q76L83 1435 aa25.63■■□□□ 1.69
CCDC88B-201ENST00000301897 GLI2P10070 1586 aa25.61■■□□□ 1.69
CCDC88B-201ENST00000301897 UACAQ9BZF9 1416 aa25.61■■□□□ 1.69
CCDC88B-201ENST00000301897 RAPGEF2Q9Y4G8 1499 aa25.59■■□□□ 1.69
CCDC88B-201ENST00000301897 DISP1Q96F81 1524 aa25.58■■□□□ 1.69
CCDC88B-201ENST00000301897 UGGT2Q9NYU1 1516 aa25.57■■□□□ 1.68
CCDC88B-201ENST00000301897 KDM4FA0A1W2PPD8 638 aa25.53■■□□□ 1.68
CCDC88B-201ENST00000301897 KDM5BQ9UGL1 1544 aa25.53■■□□□ 1.68
CCDC88B-201ENST00000301897 PPRC1Q5VV67 1664 aaKnown RBP25.51■■□□□ 1.67
CCDC88B-201ENST00000301897 KIAA0556O60303 1618 aa25.48■■□□□ 1.67
CCDC88B-201ENST00000301897 EPRSP07814 1512 aaKnown RBP25.47■■□□□ 1.67
CCDC88B-201ENST00000301897 TEX14Q8IWB6 1497 aa25.46■■□□□ 1.67
CCDC88B-201ENST00000301897 ZCCHC11Q5TAX3 1644 aaKnown RBP25.45■■□□□ 1.66
CCDC88B-201ENST00000301897 MAP3K4Q9Y6R4 1608 aa25.44■■□□□ 1.66
CCDC88B-201ENST00000301897 GOLGA3Q08378 1498 aa25.39■■□□□ 1.65
CCDC88B-201ENST00000301897 CTTNBP2Q8WZ74 1663 aa25.39■■□□□ 1.65
CCDC88B-201ENST00000301897 WDR7Q9Y4E6 1490 aa25.36■■□□□ 1.65
CCDC88B-201ENST00000301897 ADGRL1O94910 1474 aa25.32■■□□□ 1.64
CCDC88B-201ENST00000301897 COL17A1Q9UMD9 1497 aaPredicted RBP25.32■■□□□ 1.64
CCDC88B-201ENST00000301897 ABCA8O94911 1581 aa25.27■■□□□ 1.64
CCDC88B-201ENST00000301897 FAM9AQ8IZU1 332 aaPredicted RBP25.25■■□□□ 1.63
CCDC88B-201ENST00000301897 PRXQ9BXM0 1461 aa25.25■■□□□ 1.63
CCDC88B-201ENST00000301897 CFAP43Q8NDM7 1665 aa25.25■■□□□ 1.63
CCDC88B-201ENST00000301897 MAGI3Q5TCQ9 1506 aa25.23■■□□□ 1.63
CCDC88B-201ENST00000301897 CD109Q6YHK3 1445 aa25.23■■□□□ 1.63
CCDC88B-201ENST00000301897 KCNH8Q96L42 1107 aa25.17■■□□□ 1.62
CCDC88B-201ENST00000301897 ARAP3Q8WWN8 1544 aa25.05■■□□□ 1.6
CCDC88B-201ENST00000301897 PHLDB1Q86UU1 1377 aa25.05■■□□□ 1.6
CCDC88B-201ENST00000301897 ATP10BO94823 1461 aa25.04■■□□□ 1.6
CCDC88B-201ENST00000301897 HECW2Q9P2P5 1572 aa25.04■■□□□ 1.6
CCDC88B-201ENST00000301897 P3H3Q8IVL6 736 aa25■■□□□ 1.59
CCDC88B-201ENST00000301897 CSRNP3Q8WYN3 585 aa25■■□□□ 1.59
CCDC88B-201ENST00000301897 SAMD9Q5K651 1589 aa25■■□□□ 1.59
CCDC88B-201ENST00000301897 ABCA9Q8IUA7 1624 aa25■■□□□ 1.59
CCDC88B-201ENST00000301897 ILDR1Q86SU0 546 aaPredicted RBP24.98■■□□□ 1.59
CCDC88B-201ENST00000301897 ARID3CA6NKF2 412 aa24.96■■□□□ 1.59
CCDC88B-201ENST00000301897 RAPGEF6Q8TEU7 1601 aa24.96■■□□□ 1.59
CCDC88B-201ENST00000301897 KIF21BO75037 1637 aa24.95■■□□□ 1.58
CCDC88B-201ENST00000301897 EEA1Q15075 1411 aa24.93■■□□□ 1.58
CCDC88B-201ENST00000301897 NEO1Q92859 1461 aa24.92■■□□□ 1.58
CCDC88B-201ENST00000301897 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.88■■□□□ 1.57
CCDC88B-201ENST00000301897 HNRNPUL2Q1KMD3 747 aaKnown RBP24.88■■□□□ 1.57
CCDC88B-201ENST00000301897 NUP153P49790 1475 aaKnown RBP24.84■■□□□ 1.57
CCDC88B-201ENST00000301897 RAPGEF3O95398 923 aa24.82■■□□□ 1.56
CCDC88B-201ENST00000301897 ADAMTSL3P82987 1691 aa24.8■■□□□ 1.56
CCDC88B-201ENST00000301897 PLEKHD1A6NEE1 506 aa24.79■■□□□ 1.56
CCDC88B-201ENST00000301897 FHOD3Q2V2M9 1422 aa24.78■■□□□ 1.56
CCDC88B-201ENST00000301897 PTPRMP28827 1452 aa24.77■■□□□ 1.56
CCDC88B-201ENST00000301897 EFCAB5A4FU69 1503 aa24.76■■□□□ 1.55
CCDC88B-201ENST00000301897 FRMPD1Q5SYB0 1578 aa24.76■■□□□ 1.55
CCDC88B-201ENST00000301897 CFAP74Q9C0B2 1584 aa24.75■■□□□ 1.55
CCDC88B-201ENST00000301897 RANGAP1P46060 587 aaPredicted RBP24.74■■□□□ 1.55
CCDC88B-201ENST00000301897 BCORL1Q5H9F3 1711 aa24.73■■□□□ 1.55
CCDC88B-201ENST00000301897 DENND4BO75064 1496 aaPredicted RBP24.72■■□□□ 1.55
CCDC88B-201ENST00000301897 ARID4BQ4LE39 1312 aaPredicted RBP24.72■■□□□ 1.55
CCDC88B-201ENST00000301897 ARHGEF40Q8TER5 1519 aa24.71■■□□□ 1.55
CCDC88B-201ENST00000301897 AKNAQ7Z591 1439 aa24.69■■□□□ 1.54
CCDC88B-201ENST00000301897 FANCAO15360 1455 aa24.69■■□□□ 1.54
CCDC88B-201ENST00000301897 RICTORQ6R327 1708 aa24.68■■□□□ 1.54
CCDC88B-201ENST00000301897 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.66■■□□□ 1.54
CCDC88B-201ENST00000301897 MADDQ8WXG6 1647 aa24.65■■□□□ 1.54
CCDC88B-201ENST00000301897 POGZQ7Z3K3 1410 aa24.62■■□□□ 1.53
CCDC88B-201ENST00000301897 ZMYM4Q5VZL5 1548 aa24.61■■□□□ 1.53
CCDC88B-201ENST00000301897 PCF11O94913 1555 aaKnown RBP24.61■■□□□ 1.53
CCDC88B-201ENST00000301897 TTC37Q6PGP7 1564 aa24.61■■□□□ 1.53
CCDC88B-201ENST00000301897 MAGI2Q86UL8 1455 aa24.6■■□□□ 1.53
CCDC88B-201ENST00000301897 FBXO41Q8TF61 875 aa24.59■■□□□ 1.53
CCDC88B-201ENST00000301897 RIMS1Q86UR5 1692 aaKnown RBP24.56■■□□□ 1.52
CCDC88B-201ENST00000301897 ZFYVE16Q7Z3T8 1539 aa24.56■■□□□ 1.52
CCDC88B-201ENST00000301897 CDK13Q14004 1512 aaKnown RBP24.56■■□□□ 1.52
CCDC88B-201ENST00000301897 FMN1Q68DA7 1419 aa24.55■■□□□ 1.52
CCDC88B-201ENST00000301897 LMTK3Q96Q04 1460 aa24.54■■□□□ 1.52
CCDC88B-201ENST00000301897 PLCH2O75038 1416 aa24.53■■□□□ 1.52
CCDC88B-201ENST00000301897 CDK11AQ9UQ88 783 aaPredicted RBP24.52■■□□□ 1.52
CCDC88B-201ENST00000301897 HECW1Q76N89 1606 aa24.52■■□□□ 1.52
CCDC88B-201ENST00000301897 UBTFP17480 764 aaKnown RBP24.5■■□□□ 1.51
CCDC88B-201ENST00000301897 SCAPERQ9BY12 1400 aa24.5■■□□□ 1.51
CCDC88B-201ENST00000301897 YEATS2Q9ULM3 1422 aa24.49■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms