RNA–Protein interactions for RNA: ENST00000294008.3

SLX4-201, Transcript of SLX4 structure-specific endonuclease subunit, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SLX4, Length 7,307 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLX4-201ENST00000294008 PABPN1Q86U42 306 aaKnown RBP eCLIP16.57■□□□□ 0.24
SLX4-201ENST00000294008 ANO8Q9HCE9 1232 aaPredicted RBP16.56■□□□□ 0.24
SLX4-201ENST00000294008 PLCB2Q00722 1185 aa16.56■□□□□ 0.24
SLX4-201ENST00000294008 WDR43Q15061 677 aaKnown RBP eCLIP16.56■□□□□ 0.24
SLX4-201ENST00000294008 FBXO3Q9UK99 471 aa16.55■□□□□ 0.24
SLX4-201ENST00000294008 PPP1R15AO75807 674 aaPredicted RBP16.55■□□□□ 0.24
SLX4-201ENST00000294008 ARID4BQ4LE39 1312 aaPredicted RBP16.54■□□□□ 0.24
SLX4-201ENST00000294008 GOLGA2Q08379 1002 aa16.53■□□□□ 0.24
SLX4-201ENST00000294008 FKBP8Q14318 412 aa16.53■□□□□ 0.24
SLX4-201ENST00000294008 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.52■□□□□ 0.23
SLX4-201ENST00000294008 PPM1GO15355 546 aaPredicted RBP16.5■□□□□ 0.23
SLX4-201ENST00000294008 KDM2AQ9Y2K7 1162 aa16.5■□□□□ 0.23
SLX4-201ENST00000294008 TNNT2P45379 298 aaPredicted RBP16.47■□□□□ 0.23
SLX4-201ENST00000294008 HNRNPUQ00839 825 aaKnown RBP eCLIP16.47■□□□□ 0.23
SLX4-201ENST00000294008 CCDC136Q96JN2 1154 aa16.45■□□□□ 0.22
SLX4-201ENST00000294008 LAS1LQ9Y4W2 734 aaKnown RBP16.44■□□□□ 0.22
SLX4-201ENST00000294008 SENP3-EIF4A1A0A087X0R7 540 aa16.43■□□□□ 0.22
SLX4-201ENST00000294008 FGD1P98174 961 aa16.42■□□□□ 0.22
SLX4-201ENST00000294008 TMC1Q8TDI8 760 aa16.42■□□□□ 0.22
SLX4-201ENST00000294008 IRX6P78412 446 aaPredicted RBP16.4■□□□□ 0.22
SLX4-201ENST00000294008 ERICH6BQ5W0A0 696 aa16.39■□□□□ 0.21
SLX4-201ENST00000294008 OS9Q13438 667 aaPredicted RBP16.37■□□□□ 0.21
SLX4-201ENST00000294008 GOLGA6L22H0YM25 854 aa16.36■□□□□ 0.21
SLX4-201ENST00000294008 CASC1Q6TDU7 716 aa16.33■□□□□ 0.21
SLX4-201ENST00000294008 CHIC2Q9UKJ5 165 aa16.33■□□□□ 0.2
SLX4-201ENST00000294008 NOC3LQ8WTT2 800 aaKnown RBP16.33■□□□□ 0.2
SLX4-201ENST00000294008 KCNJ4P48050 445 aa16.31■□□□□ 0.2
SLX4-201ENST00000294008 GOLGA6L6A8MZA4 724 aa16.29■□□□□ 0.2
SLX4-201ENST00000294008 WWC1Q8IX03 1113 aa16.29■□□□□ 0.2
SLX4-201ENST00000294008 PNNQ9H307 717 aaKnown RBP16.28■□□□□ 0.2
SLX4-201ENST00000294008 BECN1Q14457 450 aa16.26■□□□□ 0.19
SLX4-201ENST00000294008 DDX10Q13206 875 aaKnown RBP16.26■□□□□ 0.19
SLX4-201ENST00000294008 SOX12O15370 315 aa16.26■□□□□ 0.19
SLX4-201ENST00000294008 TONSLQ96HA7 1378 aa16.25■□□□□ 0.19
SLX4-201ENST00000294008 NAP1L5Q96NT1 182 aaPredicted RBP16.25■□□□□ 0.19
SLX4-201ENST00000294008 TRHP20396 242 aaPredicted RBP16.24■□□□□ 0.19
SLX4-201ENST00000294008 ZNF330Q9Y3S2 320 aaPredicted RBP16.24■□□□□ 0.19
SLX4-201ENST00000294008 NEUROD2Q15784 382 aa16.23■□□□□ 0.19
SLX4-201ENST00000294008 FTSJ3Q8IY81 847 aaKnown RBP16.21■□□□□ 0.19
SLX4-201ENST00000294008 KIAA2012Q0VF49 1180 aa16.21■□□□□ 0.19
SLX4-201ENST00000294008 CCDC9Q9Y3X0 531 aaKnown RBP16.21■□□□□ 0.18
SLX4-201ENST00000294008 GNL2Q13823 731 aaKnown RBP16.2■□□□□ 0.18
SLX4-201ENST00000294008 KCNH8Q96L42 1107 aa16.19■□□□□ 0.18
SLX4-201ENST00000294008 A0A0U1RQG5 324 aaPredicted RBP16.19■□□□□ 0.18
SLX4-201ENST00000294008 DRC7Q8IY82 874 aa16.19■□□□□ 0.18
SLX4-201ENST00000294008 TMX4Q9H1E5 349 aaPredicted RBP16.18■□□□□ 0.18
SLX4-201ENST00000294008 RTN4Q9NQC3 1192 aaKnown RBP16.18■□□□□ 0.18
SLX4-201ENST00000294008 CNKSR2Q8WXI2 1034 aa16.18■□□□□ 0.18
SLX4-201ENST00000294008 GOLGA6L4A6NEF3 574 aa16.16■□□□□ 0.18
SLX4-201ENST00000294008 G3V3G9 751 aa16.16■□□□□ 0.18
SLX4-201ENST00000294008 DCAF8Q5TAQ9 597 aa16.16■□□□□ 0.18
SLX4-201ENST00000294008 MRS2Q9HD23 443 aa16.16■□□□□ 0.18
SLX4-201ENST00000294008 HIRIP3Q9BW71 556 aaPredicted RBP16.14■□□□□ 0.17
SLX4-201ENST00000294008 ARID3AQ99856 593 aa16.14■□□□□ 0.17
SLX4-201ENST00000294008 NRDCO43847 1150 aa16.14■□□□□ 0.17
SLX4-201ENST00000294008 VPS53Q5VIR6 699 aa16.12■□□□□ 0.17
SLX4-201ENST00000294008 RGL3Q3MIN7 710 aa16.11■□□□□ 0.17
SLX4-201ENST00000294008 HSP90AB1P08238 724 aaKnown RBP16.1■□□□□ 0.17
SLX4-201ENST00000294008 CREBRFQ8IUR6 639 aa16.1■□□□□ 0.17
SLX4-201ENST00000294008 CHAF1AQ13111 956 aaPredicted RBP16.09■□□□□ 0.17
SLX4-201ENST00000294008 DDRGK1Q96HY6 314 aa16.07■□□□□ 0.16
SLX4-201ENST00000294008 ANP32EQ9BTT0 268 aa16.07■□□□□ 0.16
SLX4-201ENST00000294008 CFAP53Q96M91 514 aa16.07■□□□□ 0.16
SLX4-201ENST00000294008 FRAT1Q92837 279 aaPredicted RBP16.06■□□□□ 0.16
SLX4-201ENST00000294008 TSPY4P0CV99 314 aa16.06■□□□□ 0.16
SLX4-201ENST00000294008 TSPY10P0CW01 314 aa16.06■□□□□ 0.16
SLX4-201ENST00000294008 SPRYD3Q8NCJ5 442 aa16.06■□□□□ 0.16
SLX4-201ENST00000294008 L1TD1Q5T7N2 865 aaKnown RBP16.06■□□□□ 0.16
SLX4-201ENST00000294008 MAPK8IP3Q9UPT6 1336 aa16.05■□□□□ 0.16
SLX4-201ENST00000294008 POGKQ9P215 609 aa16.04■□□□□ 0.16
SLX4-201ENST00000294008 EIF4G2P78344 907 aaKnown RBP eCLIP16.04■□□□□ 0.16
SLX4-201ENST00000294008 MLECQ14165 292 aa16.03■□□□□ 0.16
SLX4-201ENST00000294008 PATL2C9JE40 543 aaKnown RBP16.02■□□□□ 0.16
SLX4-201ENST00000294008 RGS3P49796 1198 aa16.01■□□□□ 0.15
SLX4-201ENST00000294008 APBB1O00213 710 aa16.01■□□□□ 0.15
SLX4-201ENST00000294008 U2SURPO15042 1029 aaKnown RBP16.01■□□□□ 0.15
SLX4-201ENST00000294008 KLHL34Q8N239 644 aa16■□□□□ 0.15
SLX4-201ENST00000294008 ACIN1Q9UKV3 1341 aaKnown RBP15.99■□□□□ 0.15
SLX4-201ENST00000294008 HSP90B1P14625 803 aaKnown RBP15.99■□□□□ 0.15
SLX4-201ENST00000294008 CEP89Q96ST8 783 aa15.98■□□□□ 0.15
SLX4-201ENST00000294008 RASSF8Q8NHQ8 419 aa15.98■□□□□ 0.15
SLX4-201ENST00000294008 MSH5O43196 834 aa15.98■□□□□ 0.15
SLX4-201ENST00000294008 CSB-PGBD3P0DP91 1061 aa15.98■□□□□ 0.15
SLX4-201ENST00000294008 CHMP3Q9Y3E7 222 aa15.96■□□□□ 0.15
SLX4-201ENST00000294008 PAK3O75914 559 aaPredicted RBP15.95■□□□□ 0.14
SLX4-201ENST00000294008 PHF23Q9BUL5 403 aaPredicted RBP15.94■□□□□ 0.14
SLX4-201ENST00000294008 RAD21O60216 631 aa15.93■□□□□ 0.14
SLX4-201ENST00000294008 MARCH6O60337 910 aa15.93■□□□□ 0.14
SLX4-201ENST00000294008 KNSTRNQ9Y448 316 aa15.91■□□□□ 0.14
SLX4-201ENST00000294008 CHMP7Q8WUX9 453 aaPredicted RBP15.91■□□□□ 0.14
SLX4-201ENST00000294008 CWC22Q9HCG8 908 aaKnown RBP15.9■□□□□ 0.14
SLX4-201ENST00000294008 ABCC9O60706 1549 aa15.9■□□□□ 0.14
SLX4-201ENST00000294008 GORABQ5T7V8 394 aa15.89■□□□□ 0.13
SLX4-201ENST00000294008 MSNP26038 577 aaKnown RBP15.88■□□□□ 0.13
SLX4-201ENST00000294008 TNNT3P45378 269 aaPredicted RBP15.88■□□□□ 0.13
SLX4-201ENST00000294008 SAFB2Q14151 953 aaKnown RBP eCLIP15.88■□□□□ 0.13
SLX4-201ENST00000294008 FRAT2O75474 233 aaPredicted RBP15.88■□□□□ 0.13
SLX4-201ENST00000294008 TAF7LQ5H9L4 462 aa15.88■□□□□ 0.13
SLX4-201ENST00000294008 NUDCQ9Y266 331 aa15.88■□□□□ 0.13
SLX4-201ENST00000294008 RRP7BPQ9NSQ0 103 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms