RNA–Protein interactions for RNA: ENST00000276573.11

TRIM55-201, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 1,960 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-201ENST00000276573 P3H3Q8IVL6 736 aa14.62□□□□□ -0.07
TRIM55-201ENST00000276573 PBRM1Q86U86 1689 aa14.6□□□□□ -0.07
TRIM55-201ENST00000276573 GRIN2BQ13224 1484 aa14.6□□□□□ -0.07
TRIM55-201ENST00000276573 FHAD1B1AJZ9 1412 aa14.6□□□□□ -0.07
TRIM55-201ENST00000276573 EFCAB5A4FU69 1503 aa14.59□□□□□ -0.07
TRIM55-201ENST00000276573 ZNF608Q9ULD9 1512 aaPredicted RBP14.58□□□□□ -0.07
TRIM55-201ENST00000276573 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.58□□□□□ -0.08
TRIM55-201ENST00000276573 THOC2Q8NI27 1593 aaKnown RBP14.58□□□□□ -0.08
TRIM55-201ENST00000276573 MAP3K1Q13233 1512 aa14.57□□□□□ -0.08
TRIM55-201ENST00000276573 FHOD3Q2V2M9 1422 aa14.56□□□□□ -0.08
TRIM55-201ENST00000276573 CCER1Q8TC90 406 aaPredicted RBP14.54□□□□□ -0.08
TRIM55-201ENST00000276573 ADAMTS12P58397 1594 aa14.54□□□□□ -0.08
TRIM55-201ENST00000276573 HNRNPUL2Q1KMD3 747 aaKnown RBP14.53□□□□□ -0.08
TRIM55-201ENST00000276573 TIAM1Q13009 1591 aa14.52□□□□□ -0.09
TRIM55-201ENST00000276573 CASKIN1Q8WXD9 1431 aa14.5□□□□□ -0.09
TRIM55-201ENST00000276573 SAMD9Q5K651 1589 aa14.5□□□□□ -0.09
TRIM55-201ENST00000276573 FMN1Q68DA7 1419 aa14.5□□□□□ -0.09
TRIM55-201ENST00000276573 ATP1B4Q9UN42 357 aaPredicted RBP14.49□□□□□ -0.09
TRIM55-201ENST00000276573 PCF11O94913 1555 aaKnown RBP14.49□□□□□ -0.09
TRIM55-201ENST00000276573 EIF4G3O43432 1585 aaKnown RBP14.48□□□□□ -0.09
TRIM55-201ENST00000276573 FYCO1Q9BQS8 1478 aa14.48□□□□□ -0.09
TRIM55-201ENST00000276573 SNAPC4Q5SXM2 1469 aa14.48□□□□□ -0.09
TRIM55-201ENST00000276573 LRRC9Q6ZRR7 1453 aa14.48□□□□□ -0.09
TRIM55-201ENST00000276573 RRBP1Q9P2E9 1410 aaKnown RBP14.48□□□□□ -0.09
TRIM55-201ENST00000276573 IQGAP2Q13576 1575 aa14.45□□□□□ -0.1
TRIM55-201ENST00000276573 CFAP43Q8NDM7 1665 aa14.43□□□□□ -0.1
TRIM55-201ENST00000276573 MAGI1Q96QZ7 1491 aaPredicted RBP14.43□□□□□ -0.1
TRIM55-201ENST00000276573 CCNB3Q8WWL7 1395 aa14.42□□□□□ -0.1
TRIM55-201ENST00000276573 GRIN2AQ12879 1464 aa14.42□□□□□ -0.1
TRIM55-201ENST00000276573 KIAA0586Q9BVV6 1533 aa14.42□□□□□ -0.1
TRIM55-201ENST00000276573 CHMP7Q8WUX9 453 aaPredicted RBP14.4□□□□□ -0.1
TRIM55-201ENST00000276573 UGGT2Q9NYU1 1516 aa14.4□□□□□ -0.1
TRIM55-201ENST00000276573 SYNJ2O15056 1496 aa14.39□□□□□ -0.11
TRIM55-201ENST00000276573 PHLDB1Q86UU1 1377 aa14.37□□□□□ -0.11
TRIM55-201ENST00000276573 FBLN2P98095 1184 aa14.34□□□□□ -0.11
TRIM55-201ENST00000276573 LRRIQ1Q96JM4 1722 aa14.33□□□□□ -0.12
TRIM55-201ENST00000276573 DISP1Q96F81 1524 aa14.32□□□□□ -0.12
TRIM55-201ENST00000276573 MTUS2Q5JR59 1369 aa14.32□□□□□ -0.12
TRIM55-201ENST00000276573 CEP170Q5SW79 1584 aa14.31□□□□□ -0.12
TRIM55-201ENST00000276573 NUP160Q12769 1436 aa14.31□□□□□ -0.12
TRIM55-201ENST00000276573 ITGAEP38570 1179 aa14.31□□□□□ -0.12
TRIM55-201ENST00000276573 CCDC18Q5T9S5 1454 aa14.3□□□□□ -0.12
TRIM55-201ENST00000276573 KIAA0556O60303 1618 aa14.29□□□□□ -0.12
TRIM55-201ENST00000276573 FAM50AQ14320 339 aaKnown RBP14.29□□□□□ -0.12
TRIM55-201ENST00000276573 HECW1Q76N89 1606 aa14.28□□□□□ -0.12
TRIM55-201ENST00000276573 JPH4Q96JJ6 628 aa14.28□□□□□ -0.12
TRIM55-201ENST00000276573 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.28□□□□□ -0.12
TRIM55-201ENST00000276573 EPRSP07814 1512 aaKnown RBP14.27□□□□□ -0.13
TRIM55-201ENST00000276573 EHBP1L1Q8N3D4 1523 aa14.25□□□□□ -0.13
TRIM55-201ENST00000276573 NCOA2Q15596 1464 aa14.24□□□□□ -0.13
TRIM55-201ENST00000276573 FGD6Q6ZV73 1430 aa14.24□□□□□ -0.13
TRIM55-201ENST00000276573 CLSPNQ9HAW4 1339 aa14.24□□□□□ -0.13
TRIM55-201ENST00000276573 DHX57Q6P158 1386 aaKnown RBP14.24□□□□□ -0.13
TRIM55-201ENST00000276573 MAGI3Q5TCQ9 1506 aa14.23□□□□□ -0.13
TRIM55-201ENST00000276573 CARMIL2Q6F5E8 1435 aa14.23□□□□□ -0.13
TRIM55-201ENST00000276573 SUPT6HQ7KZ85 1726 aaKnown RBP14.22□□□□□ -0.13
TRIM55-201ENST00000276573 CDK13Q14004 1512 aaKnown RBP14.21□□□□□ -0.13
TRIM55-201ENST00000276573 MYOM3Q5VTT5 1437 aa14.21□□□□□ -0.13
TRIM55-201ENST00000276573 SETD5Q9C0A6 1442 aa14.21□□□□□ -0.13
TRIM55-201ENST00000276573 ARHGEF11O15085 1522 aa14.21□□□□□ -0.14
TRIM55-201ENST00000276573 RAB3GAP2Q9H2M9 1393 aa14.19□□□□□ -0.14
TRIM55-201ENST00000276573 RAPGEF6Q8TEU7 1601 aa14.19□□□□□ -0.14
TRIM55-201ENST00000276573 NUP153P49790 1475 aaKnown RBP14.19□□□□□ -0.14
TRIM55-201ENST00000276573 ARID3CA6NKF2 412 aa14.19□□□□□ -0.14
TRIM55-201ENST00000276573 CDK11AQ9UQ88 783 aaPredicted RBP14.16□□□□□ -0.14
TRIM55-201ENST00000276573 PLB1Q6P1J6 1458 aa14.14□□□□□ -0.15
TRIM55-201ENST00000276573 CHD1O14646 1710 aa14.13□□□□□ -0.15
TRIM55-201ENST00000276573 PRG4Q92954 1404 aaPredicted RBP14.12□□□□□ -0.15
TRIM55-201ENST00000276573 PTPN23Q9H3S7 1636 aa14.12□□□□□ -0.15
TRIM55-201ENST00000276573 PTPRKQ15262 1439 aa14.12□□□□□ -0.15
TRIM55-201ENST00000276573 MIA2Q96PC5 1412 aa14.12□□□□□ -0.15
TRIM55-201ENST00000276573 TCOF1Q13428 1488 aaKnown RBP14.11□□□□□ -0.15
TRIM55-201ENST00000276573 ABCA8O94911 1581 aa14.09□□□□□ -0.15
TRIM55-201ENST00000276573 PTPRGP23470 1445 aa14.08□□□□□ -0.16
TRIM55-201ENST00000276573 TROQ12816 1431 aaPredicted RBP14.08□□□□□ -0.16
TRIM55-201ENST00000276573 ZNF316A6NFI3 1004 aaPredicted RBP14.07□□□□□ -0.16
TRIM55-201ENST00000276573 HFM1A2PYH4 1435 aa14.06□□□□□ -0.16
TRIM55-201ENST00000276573 ATP10BO94823 1461 aa14.05□□□□□ -0.16
TRIM55-201ENST00000276573 SHROOM2Q13796 1616 aa14.05□□□□□ -0.16
TRIM55-201ENST00000276573 NAIPQ13075 1403 aa14.04□□□□□ -0.16
TRIM55-201ENST00000276573 PLEKHD1A6NEE1 506 aa14.04□□□□□ -0.16
TRIM55-201ENST00000276573 MAPKBP1O60336 1514 aa14.04□□□□□ -0.16
TRIM55-201ENST00000276573 CHIC2Q9UKJ5 165 aa14.02□□□□□ -0.17
TRIM55-201ENST00000276573 ADCY10Q96PN6 1610 aa14□□□□□ -0.17
TRIM55-201ENST00000276573 RRP7BPQ9NSQ0 103 aa14□□□□□ -0.17
TRIM55-201ENST00000276573 ZNF644Q9H582 1327 aaPredicted RBP14□□□□□ -0.17
TRIM55-201ENST00000276573 GPATCH8Q9UKJ3 1502 aaKnown RBP13.99□□□□□ -0.17
TRIM55-201ENST00000276573 DIEXFQ68CQ4 756 aaKnown RBP13.99□□□□□ -0.17
TRIM55-201ENST00000276573 CFDP1Q9UEE9 299 aaPredicted RBP13.99□□□□□ -0.17
TRIM55-201ENST00000276573 AKNAQ7Z591 1439 aa13.98□□□□□ -0.17
TRIM55-201ENST00000276573 UACAQ9BZF9 1416 aa13.98□□□□□ -0.17
TRIM55-201ENST00000276573 KIF14Q15058 1648 aa13.98□□□□□ -0.17
TRIM55-201ENST00000276573 CLASP1Q7Z460 1538 aa13.98□□□□□ -0.17
TRIM55-201ENST00000276573 SIN3AQ96ST3 1273 aa13.97□□□□□ -0.17
TRIM55-201ENST00000276573 ERCC6L2Q5T890 1561 aa13.97□□□□□ -0.17
TRIM55-201ENST00000276573 ABCC5O15440 1437 aa13.97□□□□□ -0.17
TRIM55-201ENST00000276573 DAPK1P53355 1430 aa13.97□□□□□ -0.17
TRIM55-201ENST00000276573 ROCK1Q13464 1354 aa13.95□□□□□ -0.18
TRIM55-201ENST00000276573 ITSN2Q9NZM3 1697 aa13.95□□□□□ -0.18
TRIM55-201ENST00000276573 ABCC10Q5T3U5 1492 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms