RNA–Protein interactions for RNA: ENST00000267996.11

TPM1-201, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,670 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-201ENST00000267996 MAGI1Q96QZ7 1491 aaPredicted RBP25.67■■□□□ 1.7
TPM1-201ENST00000267996 TRIM26Q12899 539 aaPredicted RBP25.62■■□□□ 1.69
TPM1-201ENST00000267996 EFCAB5A4FU69 1503 aa25.6■■□□□ 1.69
TPM1-201ENST00000267996 SYNJ2O15056 1496 aa25.57■■□□□ 1.68
TPM1-201ENST00000267996 GRIN2AQ12879 1464 aa25.56■■□□□ 1.68
TPM1-201ENST00000267996 PCGF6Q9BYE7 350 aa25.56■■□□□ 1.68
TPM1-201ENST00000267996 SAMD9Q5K651 1589 aa25.51■■□□□ 1.67
TPM1-201ENST00000267996 PPARGC1BQ86YN6 1023 aaKnown RBP25.51■■□□□ 1.67
TPM1-201ENST00000267996 IQGAP2Q13576 1575 aa25.49■■□□□ 1.67
TPM1-201ENST00000267996 KIAA0586Q9BVV6 1533 aa25.47■■□□□ 1.67
TPM1-201ENST00000267996 CHMP7Q8WUX9 453 aaPredicted RBP25.45■■□□□ 1.67
TPM1-201ENST00000267996 FHOD3Q2V2M9 1422 aa25.44■■□□□ 1.66
TPM1-201ENST00000267996 UGGT2Q9NYU1 1516 aa25.42■■□□□ 1.66
TPM1-201ENST00000267996 APLP2Q06481 763 aa25.42■■□□□ 1.66
TPM1-201ENST00000267996 NUP160Q12769 1436 aa25.41■■□□□ 1.66
TPM1-201ENST00000267996 P3H3Q8IVL6 736 aa25.4■■□□□ 1.66
TPM1-201ENST00000267996 CEP170Q5SW79 1584 aa25.4■■□□□ 1.66
TPM1-201ENST00000267996 FMN1Q68DA7 1419 aa25.36■■□□□ 1.65
TPM1-201ENST00000267996 MAP3K1Q13233 1512 aa25.35■■□□□ 1.65
TPM1-201ENST00000267996 FBLN2P98095 1184 aa25.33■■□□□ 1.65
TPM1-201ENST00000267996 CASKIN1Q8WXD9 1431 aa25.33■■□□□ 1.65
TPM1-201ENST00000267996 PCF11O94913 1555 aaKnown RBP25.33■■□□□ 1.64
TPM1-201ENST00000267996 FYCO1Q9BQS8 1478 aa25.31■■□□□ 1.64
TPM1-201ENST00000267996 DISP1Q96F81 1524 aa25.27■■□□□ 1.64
TPM1-201ENST00000267996 TIAM1Q13009 1591 aa25.26■■□□□ 1.63
TPM1-201ENST00000267996 TTBK1Q5TCY1 1321 aaPredicted RBP25.26■■□□□ 1.63
TPM1-201ENST00000267996 KANK4Q5T7N3 995 aaPredicted RBP25.25■■□□□ 1.63
TPM1-201ENST00000267996 CHD1O14646 1710 aa25.24■■□□□ 1.63
TPM1-201ENST00000267996 KIAA0556O60303 1618 aa25.24■■□□□ 1.63
TPM1-201ENST00000267996 CFAP43Q8NDM7 1665 aa25.21■■□□□ 1.63
TPM1-201ENST00000267996 JPH4Q96JJ6 628 aa25.19■■□□□ 1.62
TPM1-201ENST00000267996 LRRC9Q6ZRR7 1453 aa25.15■■□□□ 1.62
TPM1-201ENST00000267996 CARMIL2Q6F5E8 1435 aa25.12■■□□□ 1.61
TPM1-201ENST00000267996 ATP1B4Q9UN42 357 aaPredicted RBP25.1■■□□□ 1.61
TPM1-201ENST00000267996 LRRIQ1Q96JM4 1722 aa25.09■■□□□ 1.61
TPM1-201ENST00000267996 HECW1Q76N89 1606 aa25.07■■□□□ 1.6
TPM1-201ENST00000267996 SHROOM2Q13796 1616 aa25.05■■□□□ 1.6
TPM1-201ENST00000267996 CCDC18Q5T9S5 1454 aa25.05■■□□□ 1.6
TPM1-201ENST00000267996 CLASP1Q7Z460 1538 aa25.02■■□□□ 1.6
TPM1-201ENST00000267996 PRG4Q92954 1404 aaPredicted RBP25.01■■□□□ 1.59
TPM1-201ENST00000267996 RRBP1Q9P2E9 1410 aaKnown RBP25.01■■□□□ 1.59
TPM1-201ENST00000267996 EPRSP07814 1512 aaKnown RBP25■■□□□ 1.59
TPM1-201ENST00000267996 RAPGEF6Q8TEU7 1601 aa24.99■■□□□ 1.59
TPM1-201ENST00000267996 NUP153P49790 1475 aaKnown RBP24.95■■□□□ 1.58
TPM1-201ENST00000267996 MTUS2Q5JR59 1369 aa24.93■■□□□ 1.58
TPM1-201ENST00000267996 EHBP1L1Q8N3D4 1523 aa24.93■■□□□ 1.58
TPM1-201ENST00000267996 PHLDB1Q86UU1 1377 aa24.92■■□□□ 1.58
TPM1-201ENST00000267996 PLB1Q6P1J6 1458 aa24.91■■□□□ 1.58
TPM1-201ENST00000267996 ABCA8O94911 1581 aa24.91■■□□□ 1.58
TPM1-201ENST00000267996 CDK13Q14004 1512 aaKnown RBP24.9■■□□□ 1.58
TPM1-201ENST00000267996 MAGI3Q5TCQ9 1506 aa24.9■■□□□ 1.58
TPM1-201ENST00000267996 CCNB3Q8WWL7 1395 aa24.89■■□□□ 1.58
TPM1-201ENST00000267996 HRCP23327 699 aa24.88■■□□□ 1.57
TPM1-201ENST00000267996 PTPRGP23470 1445 aa24.87■■□□□ 1.57
TPM1-201ENST00000267996 SUPT6HQ7KZ85 1726 aaKnown RBP24.84■■□□□ 1.57
TPM1-201ENST00000267996 ARHGEF11O15085 1522 aa24.84■■□□□ 1.57
TPM1-201ENST00000267996 ERCC6L2Q5T890 1561 aa24.83■■□□□ 1.57
TPM1-201ENST00000267996 NCOA2Q15596 1464 aa24.83■■□□□ 1.56
TPM1-201ENST00000267996 HNRNPUL2Q1KMD3 747 aaKnown RBP24.79■■□□□ 1.56
TPM1-201ENST00000267996 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.77■■□□□ 1.561e-7■■□□□ 13.6
TPM1-201ENST00000267996 ARID3CA6NKF2 412 aa24.76■■□□□ 1.55
TPM1-201ENST00000267996 CDK11AQ9UQ88 783 aaPredicted RBP24.75■■□□□ 1.55
TPM1-201ENST00000267996 FGD6Q6ZV73 1430 aa24.74■■□□□ 1.55
TPM1-201ENST00000267996 ATP10BO94823 1461 aa24.74■■□□□ 1.55
TPM1-201ENST00000267996 MYOM3Q5VTT5 1437 aa24.74■■□□□ 1.55
TPM1-201ENST00000267996 UACAQ9BZF9 1416 aa24.74■■□□□ 1.55
TPM1-201ENST00000267996 TROQ12816 1431 aaPredicted RBP24.72■■□□□ 1.55
TPM1-201ENST00000267996 OSCARQ8IYS5 282 aa24.72■■□□□ 1.55
TPM1-201ENST00000267996 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.67■■□□□ 1.54
TPM1-201ENST00000267996 ABCC2Q92887 1545 aa24.66■■□□□ 1.54
TPM1-201ENST00000267996 ADCY10Q96PN6 1610 aa24.65■■□□□ 1.54
TPM1-201ENST00000267996 FAM50AQ14320 339 aaKnown RBP24.64■■□□□ 1.53
TPM1-201ENST00000267996 UHRF1BP1LA0JNW5 1464 aa24.63■■□□□ 1.53
TPM1-201ENST00000267996 MIA2Q96PC5 1412 aa24.63■■□□□ 1.53
TPM1-201ENST00000267996 TCOF1Q13428 1488 aaKnown RBP24.62■■□□□ 1.53
TPM1-201ENST00000267996 ZEB1P37275 1124 aaPredicted RBP24.6■■□□□ 1.53
TPM1-201ENST00000267996 PTPN23Q9H3S7 1636 aa24.59■■□□□ 1.53
TPM1-201ENST00000267996 PLEKHD1A6NEE1 506 aa24.59■■□□□ 1.53
TPM1-201ENST00000267996 KIF14Q15058 1648 aa24.56■■□□□ 1.52
TPM1-201ENST00000267996 CCER1Q8TC90 406 aaPredicted RBP24.56■■□□□ 1.52
TPM1-201ENST00000267996 ITGAEP38570 1179 aa24.55■■□□□ 1.52
TPM1-201ENST00000267996 KDM5BQ9UGL1 1544 aa24.53■■□□□ 1.52
TPM1-201ENST00000267996 ABCC10Q5T3U5 1492 aa24.52■■□□□ 1.52
TPM1-201ENST00000267996 GPATCH8Q9UKJ3 1502 aaKnown RBP24.5■■□□□ 1.51
TPM1-201ENST00000267996 ITSN2Q9NZM3 1697 aa24.49■■□□□ 1.51
TPM1-201ENST00000267996 PTPRKQ15262 1439 aa24.47■■□□□ 1.51
TPM1-201ENST00000267996 ZCCHC11Q5TAX3 1644 aaKnown RBP24.47■■□□□ 1.51
TPM1-201ENST00000267996 SETD5Q9C0A6 1442 aa24.46■■□□□ 1.51
TPM1-201ENST00000267996 CDC42BPAQ5VT25 1732 aa24.42■■□□□ 1.5
TPM1-201ENST00000267996 RAB3GAP2Q9H2M9 1393 aa24.41■■□□□ 1.5
TPM1-201ENST00000267996 CFDP1Q9UEE9 299 aaPredicted RBP24.4■■□□□ 1.5
TPM1-201ENST00000267996 HFM1A2PYH4 1435 aa24.38■■□□□ 1.49
TPM1-201ENST00000267996 DHX57Q6P158 1386 aaKnown RBP24.37■■□□□ 1.49
TPM1-201ENST00000267996 CAMSAP2Q08AD1 1489 aa24.37■■□□□ 1.49
TPM1-201ENST00000267996 ZNF644Q9H582 1327 aaPredicted RBP24.36■■□□□ 1.49
TPM1-201ENST00000267996 DNMT1P26358 1616 aaKnown RBP24.36■■□□□ 1.49
TPM1-201ENST00000267996 AKNAQ7Z591 1439 aa24.35■■□□□ 1.49
TPM1-201ENST00000267996 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.34■■□□□ 1.49
TPM1-201ENST00000267996 ABCC5O15440 1437 aa24.33■■□□□ 1.49
TPM1-201ENST00000267996 DAPK1P53355 1430 aa24.33■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms