RNA–Protein interactions for RNA: ENST00000260653.4

SIX3-201, Transcript of SIX homeobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX3, Length 2,523 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3-201ENST00000260653 ADAMTS12P58397 1594 aa34.9■■■■□ 3.18
SIX3-201ENST00000260653 FHAD1B1AJZ9 1412 aa34.87■■■■□ 3.17
SIX3-201ENST00000260653 TTBK1Q5TCY1 1321 aaPredicted RBP34.8■■■■□ 3.16
SIX3-201ENST00000260653 SNAPC4Q5SXM2 1469 aa34.77■■■■□ 3.16
SIX3-201ENST00000260653 APLP2Q06481 763 aa34.67■■■■□ 3.14
SIX3-201ENST00000260653 EFCAB5A4FU69 1503 aa34.67■■■■□ 3.14
SIX3-201ENST00000260653 P3H3Q8IVL6 736 aa34.64■■■■□ 3.14
SIX3-201ENST00000260653 MAGI1Q96QZ7 1491 aaPredicted RBP34.63■■■■□ 3.13
SIX3-201ENST00000260653 FHOD3Q2V2M9 1422 aa34.6■■■■□ 3.13
SIX3-201ENST00000260653 GRIN2AQ12879 1464 aa34.57■■■■□ 3.12
SIX3-201ENST00000260653 SAMD9Q5K651 1589 aa34.55■■■■□ 3.12
SIX3-201ENST00000260653 IQGAP2Q13576 1575 aa34.54■■■■□ 3.12
SIX3-201ENST00000260653 SYNJ2O15056 1496 aa34.53■■■■□ 3.12
SIX3-201ENST00000260653 PCF11O94913 1555 aaKnown RBP34.46■■■■□ 3.11
SIX3-201ENST00000260653 CHMP7Q8WUX9 453 aaPredicted RBP34.46■■■■□ 3.11
SIX3-201ENST00000260653 KANK4Q5T7N3 995 aaPredicted RBP34.42■■■■□ 3.1
SIX3-201ENST00000260653 KIAA0586Q9BVV6 1533 aa34.41■■■■□ 3.1
SIX3-201ENST00000260653 FBLN2P98095 1184 aa34.41■■■■□ 3.1
SIX3-201ENST00000260653 CEP170Q5SW79 1584 aa34.37■■■■□ 3.09
SIX3-201ENST00000260653 FMN1Q68DA7 1419 aa34.37■■■■□ 3.09
SIX3-201ENST00000260653 TIAM1Q13009 1591 aa34.35■■■■□ 3.09
SIX3-201ENST00000260653 UGGT2Q9NYU1 1516 aa34.34■■■■□ 3.09
SIX3-201ENST00000260653 FYCO1Q9BQS8 1478 aa34.34■■■■□ 3.09
SIX3-201ENST00000260653 CASKIN1Q8WXD9 1431 aa34.33■■■■□ 3.09
SIX3-201ENST00000260653 MAP3K1Q13233 1512 aa34.32■■■■□ 3.09
SIX3-201ENST00000260653 ATP1B4Q9UN42 357 aaPredicted RBP34.29■■■■□ 3.08
SIX3-201ENST00000260653 NUP160Q12769 1436 aa34.28■■■■□ 3.08
SIX3-201ENST00000260653 HRCP23327 699 aa34.27■■■■□ 3.08
SIX3-201ENST00000260653 CFAP43Q8NDM7 1665 aa34.26■■■■□ 3.07
SIX3-201ENST00000260653 DISP1Q96F81 1524 aa34.2■■■■□ 3.07
SIX3-201ENST00000260653 KIAA0556O60303 1618 aa34.19■■■■□ 3.06
SIX3-201ENST00000260653 LRRC9Q6ZRR7 1453 aa34.19■■■■□ 3.06
SIX3-201ENST00000260653 CHD1O14646 1710 aa34.15■■■■□ 3.06
SIX3-201ENST00000260653 LRRIQ1Q96JM4 1722 aa34.13■■■■□ 3.05
SIX3-201ENST00000260653 JPH4Q96JJ6 628 aa34.05■■■■□ 3.04
SIX3-201ENST00000260653 HECW1Q76N89 1606 aa34.02■■■■□ 3.04
SIX3-201ENST00000260653 RRBP1Q9P2E9 1410 aaKnown RBP34.01■■■■□ 3.03
SIX3-201ENST00000260653 HNRNPUL2Q1KMD3 747 aaKnown RBP33.98■■■■□ 3.03
SIX3-201ENST00000260653 CARMIL2Q6F5E8 1435 aa33.96■■■■□ 3.03
SIX3-201ENST00000260653 PHLDB1Q86UU1 1377 aa33.94■■■■□ 3.02
SIX3-201ENST00000260653 CCDC18Q5T9S5 1454 aa33.94■■■■□ 3.02
SIX3-201ENST00000260653 EPRSP07814 1512 aaKnown RBP33.91■■■■□ 3.02
SIX3-201ENST00000260653 MTUS2Q5JR59 1369 aa33.91■■■■□ 3.02
SIX3-201ENST00000260653 CCNB3Q8WWL7 1395 aa33.9■■■■□ 3.02
SIX3-201ENST00000260653 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.87■■■■□ 3.01
SIX3-201ENST00000260653 RAPGEF6Q8TEU7 1601 aa33.87■■■■□ 3.01
SIX3-201ENST00000260653 CDK13Q14004 1512 aaKnown RBP33.87■■■■□ 3.01
SIX3-201ENST00000260653 MAGI3Q5TCQ9 1506 aa33.84■■■■□ 3.01
SIX3-201ENST00000260653 ARID3CA6NKF2 412 aa33.83■■■■□ 3.01
SIX3-201ENST00000260653 PRG4Q92954 1404 aaPredicted RBP33.83■■■■□ 3.01
SIX3-201ENST00000260653 EHBP1L1Q8N3D4 1523 aa33.83■■■■□ 3.01
SIX3-201ENST00000260653 NUP153P49790 1475 aaKnown RBP33.82■■■■□ 3.01
SIX3-201ENST00000260653 PLB1Q6P1J6 1458 aa33.8■■■■□ 3
SIX3-201ENST00000260653 SHROOM2Q13796 1616 aa33.78■■■■□ 3
SIX3-201ENST00000260653 SUPT6HQ7KZ85 1726 aaKnown RBP33.75■■■□□ 2.99
SIX3-201ENST00000260653 NCOA2Q15596 1464 aa33.74■■■□□ 2.99
SIX3-201ENST00000260653 CCER1Q8TC90 406 aaPredicted RBP33.72■■■□□ 2.99
SIX3-201ENST00000260653 CLASP1Q7Z460 1538 aa33.71■■■□□ 2.99
SIX3-201ENST00000260653 ZEB1P37275 1124 aaPredicted RBP33.68■■■□□ 2.98
SIX3-201ENST00000260653 ABCA8O94911 1581 aa33.67■■■□□ 2.98
SIX3-201ENST00000260653 ARHGEF11O15085 1522 aa33.66■■■□□ 2.98
SIX3-201ENST00000260653 ITGAEP38570 1179 aa33.65■■■□□ 2.98
SIX3-201ENST00000260653 FAM50AQ14320 339 aaKnown RBP33.64■■■□□ 2.98
SIX3-201ENST00000260653 FGD6Q6ZV73 1430 aa33.64■■■□□ 2.98
SIX3-201ENST00000260653 ERCC6L2Q5T890 1561 aa33.63■■■□□ 2.97
SIX3-201ENST00000260653 PTPRGP23470 1445 aa33.63■■■□□ 2.97
SIX3-201ENST00000260653 MYOM3Q5VTT5 1437 aa33.61■■■□□ 2.97
SIX3-201ENST00000260653 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP33.53■■■□□ 2.96
SIX3-201ENST00000260653 CDK11AQ9UQ88 783 aaPredicted RBP33.53■■■□□ 2.96
SIX3-201ENST00000260653 ATP10BO94823 1461 aa33.47■■■□□ 2.95
SIX3-201ENST00000260653 TROQ12816 1431 aaPredicted RBP33.47■■■□□ 2.95
SIX3-201ENST00000260653 PTPN23Q9H3S7 1636 aa33.45■■■□□ 2.94
SIX3-201ENST00000260653 UACAQ9BZF9 1416 aa33.43■■■□□ 2.94
SIX3-201ENST00000260653 KIF14Q15058 1648 aa33.37■■■□□ 2.93
SIX3-201ENST00000260653 ADCY10Q96PN6 1610 aa33.36■■■□□ 2.93
SIX3-201ENST00000260653 MIA2Q96PC5 1412 aa33.36■■■□□ 2.93
SIX3-201ENST00000260653 TCOF1Q13428 1488 aaKnown RBP33.36■■■□□ 2.93
SIX3-201ENST00000260653 ABCC2Q92887 1545 aa33.33■■■□□ 2.93
SIX3-201ENST00000260653 PLEKHD1A6NEE1 506 aa33.33■■■□□ 2.93
SIX3-201ENST00000260653 RAB3GAP2Q9H2M9 1393 aa33.31■■■□□ 2.92
SIX3-201ENST00000260653 PTPRKQ15262 1439 aa33.31■■■□□ 2.92
SIX3-201ENST00000260653 SETD5Q9C0A6 1442 aa33.3■■■□□ 2.92
SIX3-201ENST00000260653 OSCARQ8IYS5 282 aa33.29■■■□□ 2.92
SIX3-201ENST00000260653 DHX57Q6P158 1386 aaKnown RBP33.27■■■□□ 2.92
SIX3-201ENST00000260653 ITSN2Q9NZM3 1697 aa33.22■■■□□ 2.91
SIX3-201ENST00000260653 GPATCH8Q9UKJ3 1502 aaKnown RBP33.22■■■□□ 2.91
SIX3-201ENST00000260653 UHRF1BP1LA0JNW5 1464 aa33.19■■■□□ 2.9
SIX3-201ENST00000260653 ABCC10Q5T3U5 1492 aa33.19■■■□□ 2.9
SIX3-201ENST00000260653 ZNF644Q9H582 1327 aaPredicted RBP33.17■■■□□ 2.9
SIX3-201ENST00000260653 CFDP1Q9UEE9 299 aaPredicted RBP33.14■■■□□ 2.9
SIX3-201ENST00000260653 HFM1A2PYH4 1435 aa33.14■■■□□ 2.9
SIX3-201ENST00000260653 CDC42BPAQ5VT25 1732 aa33.13■■■□□ 2.89
SIX3-201ENST00000260653 ZCCHC11Q5TAX3 1644 aaKnown RBP33.12■■■□□ 2.89
SIX3-201ENST00000260653 CAMSAP2Q08AD1 1489 aa33.1■■■□□ 2.89
SIX3-201ENST00000260653 KDM5BQ9UGL1 1544 aa33.1■■■□□ 2.89
SIX3-201ENST00000260653 CHIC2Q9UKJ5 165 aa33.08■■■□□ 2.89
SIX3-201ENST00000260653 DNMT1P26358 1616 aaKnown RBP33.08■■■□□ 2.89
SIX3-201ENST00000260653 NAIPQ13075 1403 aa33.08■■■□□ 2.89
SIX3-201ENST00000260653 CLSPNQ9HAW4 1339 aa33.07■■■□□ 2.88
SIX3-201ENST00000260653 DAPK1P53355 1430 aa33.06■■■□□ 2.88
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms