RNA–Protein interactions for RNA: ENST00000239243.6

MSX2-201, Transcript of msh homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX2, Length 2,241 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2-201ENST00000239243 FHAD1B1AJZ9 1412 aa35.49■■■■□ 3.27
MSX2-201ENST00000239243 MAP3K1Q13233 1512 aa35.43■■■■□ 3.26
MSX2-201ENST00000239243 GRIN2BQ13224 1484 aa35.43■■■■□ 3.26
MSX2-201ENST00000239243 THOC2Q8NI27 1593 aaKnown RBP35.42■■■■□ 3.26
MSX2-201ENST00000239243 AQRO60306 1485 aaKnown RBP eCLIP35.42■■■■□ 3.26
MSX2-201ENST00000239243 ADAMTS12P58397 1594 aa35.39■■■■□ 3.26
MSX2-201ENST00000239243 KANK4Q5T7N3 995 aaPredicted RBP35.32■■■■□ 3.24
MSX2-201ENST00000239243 TIAM1Q13009 1591 aa35.32■■■■□ 3.24
MSX2-201ENST00000239243 FHOD3Q2V2M9 1422 aa35.29■■■■□ 3.24
MSX2-201ENST00000239243 ZNF608Q9ULD9 1512 aaPredicted RBP35.29■■■■□ 3.24
MSX2-201ENST00000239243 SAMD9Q5K651 1589 aa35.29■■■■□ 3.24
MSX2-201ENST00000239243 PCF11O94913 1555 aaKnown RBP35.27■■■■□ 3.24
MSX2-201ENST00000239243 CCER1Q8TC90 406 aaPredicted RBP35.25■■■■□ 3.23
MSX2-201ENST00000239243 FYCO1Q9BQS8 1478 aa35.25■■■■□ 3.23
MSX2-201ENST00000239243 FMN1Q68DA7 1419 aa35.25■■■■□ 3.23
MSX2-201ENST00000239243 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP35.25■■■■□ 3.23
MSX2-201ENST00000239243 P3H3Q8IVL6 736 aa35.24■■■■□ 3.23
MSX2-201ENST00000239243 EIF4G3O43432 1585 aaKnown RBP35.23■■■■□ 3.23
MSX2-201ENST00000239243 CFAP43Q8NDM7 1665 aa35.22■■■■□ 3.23
MSX2-201ENST00000239243 CASKIN1Q8WXD9 1431 aa35.21■■■■□ 3.23
MSX2-201ENST00000239243 RRBP1Q9P2E9 1410 aaKnown RBP35.16■■■■□ 3.22
MSX2-201ENST00000239243 LRRC9Q6ZRR7 1453 aa35.15■■■■□ 3.22
MSX2-201ENST00000239243 IQGAP2Q13576 1575 aa35.14■■■■□ 3.22
MSX2-201ENST00000239243 HNRNPUL2Q1KMD3 747 aaKnown RBP35.12■■■■□ 3.21
MSX2-201ENST00000239243 SNAPC4Q5SXM2 1469 aa35.11■■■■□ 3.21
MSX2-201ENST00000239243 MAGI1Q96QZ7 1491 aaPredicted RBP35.07■■■■□ 3.2
MSX2-201ENST00000239243 CCNB3Q8WWL7 1395 aa35.01■■■■□ 3.2
MSX2-201ENST00000239243 GRIN2AQ12879 1464 aa35.01■■■■□ 3.19
MSX2-201ENST00000239243 ATP1B4Q9UN42 357 aaPredicted RBP35■■■■□ 3.19
MSX2-201ENST00000239243 UGGT2Q9NYU1 1516 aa34.97■■■■□ 3.19
MSX2-201ENST00000239243 KIAA0586Q9BVV6 1533 aa34.97■■■■□ 3.19
MSX2-201ENST00000239243 SYNJ2O15056 1496 aa34.93■■■■□ 3.18
MSX2-201ENST00000239243 PHLDB1Q86UU1 1377 aa34.83■■■■□ 3.17
MSX2-201ENST00000239243 CHMP7Q8WUX9 453 aaPredicted RBP34.82■■■■□ 3.16
MSX2-201ENST00000239243 CCDC18Q5T9S5 1454 aa34.81■■■■□ 3.16
MSX2-201ENST00000239243 LRRIQ1Q96JM4 1722 aa34.81■■■■□ 3.16
MSX2-201ENST00000239243 HECW1Q76N89 1606 aa34.81■■■■□ 3.16
MSX2-201ENST00000239243 KIAA0556O60303 1618 aa34.77■■■■□ 3.16
MSX2-201ENST00000239243 MTUS2Q5JR59 1369 aa34.77■■■■□ 3.16
MSX2-201ENST00000239243 CEP170Q5SW79 1584 aa34.74■■■■□ 3.15
MSX2-201ENST00000239243 DISP1Q96F81 1524 aa34.72■■■■□ 3.15
MSX2-201ENST00000239243 EHBP1L1Q8N3D4 1523 aa34.72■■■■□ 3.15
MSX2-201ENST00000239243 NUP160Q12769 1436 aa34.7■■■■□ 3.15
MSX2-201ENST00000239243 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP34.69■■■■□ 3.14
MSX2-201ENST00000239243 SUPT6HQ7KZ85 1726 aaKnown RBP34.65■■■■□ 3.14
MSX2-201ENST00000239243 FBLN2P98095 1184 aa34.63■■■■□ 3.13
MSX2-201ENST00000239243 EPRSP07814 1512 aaKnown RBP34.62■■■■□ 3.13
MSX2-201ENST00000239243 CLSPNQ9HAW4 1339 aa34.62■■■■□ 3.13
MSX2-201ENST00000239243 NCOA2Q15596 1464 aa34.58■■■■□ 3.13
MSX2-201ENST00000239243 FGD6Q6ZV73 1430 aa34.58■■■■□ 3.13
MSX2-201ENST00000239243 FAM50AQ14320 339 aaKnown RBP34.58■■■■□ 3.13
MSX2-201ENST00000239243 ITGAEP38570 1179 aa34.57■■■■□ 3.12
MSX2-201ENST00000239243 CARMIL2Q6F5E8 1435 aa34.54■■■■□ 3.12
MSX2-201ENST00000239243 DHX57Q6P158 1386 aaKnown RBP34.53■■■■□ 3.12
MSX2-201ENST00000239243 RAPGEF6Q8TEU7 1601 aa34.52■■■■□ 3.12
MSX2-201ENST00000239243 MYOM3Q5VTT5 1437 aa34.52■■■■□ 3.12
MSX2-201ENST00000239243 ARHGEF11O15085 1522 aa34.51■■■■□ 3.12
MSX2-201ENST00000239243 MAGI3Q5TCQ9 1506 aa34.51■■■■□ 3.11
MSX2-201ENST00000239243 CDK13Q14004 1512 aaKnown RBP34.47■■■■□ 3.11
MSX2-201ENST00000239243 JPH4Q96JJ6 628 aa34.47■■■■□ 3.11
MSX2-201ENST00000239243 SETD5Q9C0A6 1442 aa34.45■■■■□ 3.11
MSX2-201ENST00000239243 RAB3GAP2Q9H2M9 1393 aa34.42■■■■□ 3.1
MSX2-201ENST00000239243 NUP153P49790 1475 aaKnown RBP34.42■■■■□ 3.1
MSX2-201ENST00000239243 PTPN23Q9H3S7 1636 aa34.34■■■■□ 3.09
MSX2-201ENST00000239243 CHD1O14646 1710 aa34.34■■■■□ 3.09
MSX2-201ENST00000239243 CDK11AQ9UQ88 783 aaPredicted RBP34.33■■■■□ 3.09
MSX2-201ENST00000239243 TCOF1Q13428 1488 aaKnown RBP34.29■■■■□ 3.08
MSX2-201ENST00000239243 MIA2Q96PC5 1412 aa34.29■■■■□ 3.08
MSX2-201ENST00000239243 PLB1Q6P1J6 1458 aa34.27■■■■□ 3.08
MSX2-201ENST00000239243 ARID3CA6NKF2 412 aa34.24■■■■□ 3.07
MSX2-201ENST00000239243 ABCA8O94911 1581 aa34.21■■■■□ 3.07
MSX2-201ENST00000239243 PRG4Q92954 1404 aaPredicted RBP34.19■■■■□ 3.06
MSX2-201ENST00000239243 HFM1A2PYH4 1435 aa34.18■■■■□ 3.06
MSX2-201ENST00000239243 TROQ12816 1431 aaPredicted RBP34.17■■■■□ 3.06
MSX2-201ENST00000239243 SHROOM2Q13796 1616 aa34.15■■■■□ 3.06
MSX2-201ENST00000239243 PTPRKQ15262 1439 aa34.15■■■■□ 3.06
MSX2-201ENST00000239243 ADCY10Q96PN6 1610 aa34.11■■■■□ 3.05
MSX2-201ENST00000239243 MAPKBP1O60336 1514 aa34.11■■■■□ 3.05
MSX2-201ENST00000239243 ZNF316A6NFI3 1004 aaPredicted RBP34.08■■■■□ 3.05
MSX2-201ENST00000239243 PTPRGP23470 1445 aa34.08■■■■□ 3.05
MSX2-201ENST00000239243 AKNAQ7Z591 1439 aa34.05■■■■□ 3.04
MSX2-201ENST00000239243 ITSN2Q9NZM3 1697 aa34.04■■■■□ 3.04
MSX2-201ENST00000239243 NAIPQ13075 1403 aa34.04■■■■□ 3.04
MSX2-201ENST00000239243 ATP10BO94823 1461 aa33.99■■■■□ 3.03
MSX2-201ENST00000239243 GCC2Q8IWJ2 1684 aa33.99■■■■□ 3.03
MSX2-201ENST00000239243 UACAQ9BZF9 1416 aa33.96■■■■□ 3.03
MSX2-201ENST00000239243 PLEKHD1A6NEE1 506 aa33.96■■■■□ 3.03
MSX2-201ENST00000239243 KIF14Q15058 1648 aa33.95■■■■□ 3.02
MSX2-201ENST00000239243 CLASP1Q7Z460 1538 aa33.94■■■■□ 3.02
MSX2-201ENST00000239243 DNMT1P26358 1616 aaKnown RBP33.94■■■■□ 3.02
MSX2-201ENST00000239243 DIEXFQ68CQ4 756 aaKnown RBP33.92■■■■□ 3.02
MSX2-201ENST00000239243 GPATCH8Q9UKJ3 1502 aaKnown RBP33.91■■■■□ 3.02
MSX2-201ENST00000239243 DAPK1P53355 1430 aa33.9■■■■□ 3.02
MSX2-201ENST00000239243 ROCK1Q13464 1354 aa33.87■■■■□ 3.01
MSX2-201ENST00000239243 CFDP1Q9UEE9 299 aaPredicted RBP33.85■■■■□ 3.01
MSX2-201ENST00000239243 ACIN1Q9UKV3 1341 aaKnown RBP33.85■■■■□ 3.01
MSX2-201ENST00000239243 CAMSAP2Q08AD1 1489 aa33.84■■■■□ 3.01
MSX2-201ENST00000239243 TIMELESSQ9UNS1 1208 aa33.84■■■■□ 3.01
MSX2-201ENST00000239243 CHIC2Q9UKJ5 165 aa33.83■■■■□ 3.01
MSX2-201ENST00000239243 ABCC5O15440 1437 aa33.83■■■■□ 3.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms