RNA–Protein interactions for RNA: ENST00000234256.3

SLC1A4-201, Transcript of solute carrier family 1 member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SLC1A4, Length 4,561 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLC1A4-201ENST00000234256 SOGA1O94964 1423 aa23.19■■□□□ 1.3
SLC1A4-201ENST00000234256 NBR1Q14596 966 aa23.16■■□□□ 1.3
SLC1A4-201ENST00000234256 NEFMP07197 916 aa23.15■■□□□ 1.3
SLC1A4-201ENST00000234256 CHMP7Q8WUX9 453 aaPredicted RBP23.09■■□□□ 1.29
SLC1A4-201ENST00000234256 SENP3Q9H4L4 574 aaPredicted RBP23.09■■□□□ 1.29
SLC1A4-201ENST00000234256 RGL3Q3MIN7 710 aa23.09■■□□□ 1.29
SLC1A4-201ENST00000234256 SUPT16HQ9Y5B9 1047 aaKnown RBP23.09■■□□□ 1.29
SLC1A4-201ENST00000234256 CEP164Q9UPV0 1460 aa23.06■■□□□ 1.28
SLC1A4-201ENST00000234256 KIF27Q86VH2 1401 aa23.02■■□□□ 1.27
SLC1A4-201ENST00000234256 BAZ1BQ9UIG0 1483 aaKnown RBP23.01■■□□□ 1.27
SLC1A4-201ENST00000234256 KCNH8Q96L42 1107 aa22.99■■□□□ 1.27
SLC1A4-201ENST00000234256 PLPPR3Q6T4P5 718 aa22.99■■□□□ 1.27
SLC1A4-201ENST00000234256 KANK4Q5T7N3 995 aaPredicted RBP22.98■■□□□ 1.27
SLC1A4-201ENST00000234256 MROH2BQ7Z745 1585 aa22.98■■□□□ 1.27
SLC1A4-201ENST00000234256 STAG3Q9UJ98 1225 aa22.98■■□□□ 1.27
SLC1A4-201ENST00000234256 WDR43Q15061 677 aaKnown RBP eCLIP22.97■■□□□ 1.27
SLC1A4-201ENST00000234256 CCNB3Q8WWL7 1395 aa22.91■■□□□ 1.26
SLC1A4-201ENST00000234256 CFDP1Q9UEE9 299 aaPredicted RBP22.91■■□□□ 1.26
SLC1A4-201ENST00000234256 CCDC88BA6NC98 1476 aa22.9■■□□□ 1.26
SLC1A4-201ENST00000234256 PLEKHD1A6NEE1 506 aa22.9■■□□□ 1.26
SLC1A4-201ENST00000234256 EIF5BO60841 1220 aaKnown RBP22.89■■□□□ 1.26
SLC1A4-201ENST00000234256 ARXQ96QS3 562 aa22.89■■□□□ 1.26
SLC1A4-201ENST00000234256 NPM1P06748 294 aaKnown RBP eCLIP22.89■■□□□ 1.25
SLC1A4-201ENST00000234256 ABCC8Q09428 1581 aa22.88■■□□□ 1.25
SLC1A4-201ENST00000234256 HSP90AA1P07900 732 aaKnown RBP22.87■■□□□ 1.25
SLC1A4-201ENST00000234256 ESF1Q9H501 851 aaKnown RBP22.85■■□□□ 1.25
SLC1A4-201ENST00000234256 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.85■■□□□ 1.25
SLC1A4-201ENST00000234256 UPF2Q9HAU5 1272 aaKnown RBP22.84■■□□□ 1.25
SLC1A4-201ENST00000234256 CARD11Q9BXL7 1154 aa22.83■■□□□ 1.24
SLC1A4-201ENST00000234256 B4GALNT3Q6L9W6 998 aa22.77■■□□□ 1.24
SLC1A4-201ENST00000234256 CARMIL1Q5VZK9 1371 aa22.77■■□□□ 1.24
SLC1A4-201ENST00000234256 VPS8Q8N3P4 1428 aa22.76■■□□□ 1.23
SLC1A4-201ENST00000234256 FOXD1Q16676 465 aa22.74■■□□□ 1.23
SLC1A4-201ENST00000234256 CUX2O14529 1486 aa22.72■■□□□ 1.23
SLC1A4-201ENST00000234256 ANP32EQ9BTT0 268 aa22.71■■□□□ 1.23
SLC1A4-201ENST00000234256 NEUROD2Q15784 382 aa22.7■■□□□ 1.22
SLC1A4-201ENST00000234256 WIZO95785 1651 aa22.67■■□□□ 1.22
SLC1A4-201ENST00000234256 TOP2AP11388 1531 aaKnown RBP22.66■■□□□ 1.22
SLC1A4-201ENST00000234256 PPP4R2Q9NY27 417 aa22.65■■□□□ 1.22
SLC1A4-201ENST00000234256 KNSTRNQ9Y448 316 aa22.65■■□□□ 1.22
SLC1A4-201ENST00000234256 CC2D1BQ5T0F9 858 aaKnown RBP22.63■■□□□ 1.21
SLC1A4-201ENST00000234256 HSPA5P11021 654 aaKnown RBP22.62■■□□□ 1.21
SLC1A4-201ENST00000234256 DCAF11Q8TEB1 546 aa22.62■■□□□ 1.21
SLC1A4-201ENST00000234256 PLEKHG5O94827 1062 aa22.62■■□□□ 1.21
SLC1A4-201ENST00000234256 RAB3GAP2Q9H2M9 1393 aa22.61■■□□□ 1.21
SLC1A4-201ENST00000234256 SETD5Q9C0A6 1442 aa22.6■■□□□ 1.21
SLC1A4-201ENST00000234256 FHAD1B1AJZ9 1412 aa22.6■■□□□ 1.21
SLC1A4-201ENST00000234256 TNNT2P45379 298 aaPredicted RBP22.59■■□□□ 1.21
SLC1A4-201ENST00000234256 SMARCA2P51531 1590 aa22.58■■□□□ 1.21
SLC1A4-201ENST00000234256 RGS3P49796 1198 aa22.57■■□□□ 1.2
SLC1A4-201ENST00000234256 PPM1GO15355 546 aaPredicted RBP22.56■■□□□ 1.2
SLC1A4-201ENST00000234256 ANP32BQ92688 251 aaKnown RBP22.55■■□□□ 1.2
SLC1A4-201ENST00000234256 TIMELESSQ9UNS1 1208 aa22.55■■□□□ 1.2
SLC1A4-201ENST00000234256 RUSC2Q8N2Y8 1516 aa22.54■■□□□ 1.2
SLC1A4-201ENST00000234256 LAS1LQ9Y4W2 734 aaKnown RBP22.54■■□□□ 1.2
SLC1A4-201ENST00000234256 RBM19Q9Y4C8 960 aaKnown RBP22.52■■□□□ 1.2
SLC1A4-201ENST00000234256 PPP1R15AO75807 674 aaPredicted RBP22.51■■□□□ 1.19
SLC1A4-201ENST00000234256 CCER2I3L3R5 266 aa22.51■■□□□ 1.19
SLC1A4-201ENST00000234256 SMARCA4P51532 1647 aa22.5■■□□□ 1.19
SLC1A4-201ENST00000234256 TDRD9Q8NDG6 1382 aaKnown RBP22.5■■□□□ 1.19
SLC1A4-201ENST00000234256 PKD2Q13563 968 aa22.48■■□□□ 1.19
SLC1A4-201ENST00000234256 FRAT1Q92837 279 aaPredicted RBP22.48■■□□□ 1.19
SLC1A4-201ENST00000234256 CDCA8Q53HL2 280 aa22.45■■□□□ 1.18
SLC1A4-201ENST00000234256 RAPGEF2Q9Y4G8 1499 aa22.44■■□□□ 1.18
SLC1A4-201ENST00000234256 EIF4G1Q04637 1599 aaKnown RBP22.44■■□□□ 1.18
SLC1A4-201ENST00000234256 MPHOSPH9Q99550 1183 aa22.43■■□□□ 1.18
SLC1A4-201ENST00000234256 CFAP53Q96M91 514 aa22.41■■□□□ 1.18
SLC1A4-201ENST00000234256 L3MBTL2Q969R5 705 aa22.4■■□□□ 1.18
SLC1A4-201ENST00000234256 ARHGAP35Q9NRY4 1499 aa22.39■■□□□ 1.18
SLC1A4-201ENST00000234256 DDRGK1Q96HY6 314 aa22.39■■□□□ 1.17
SLC1A4-201ENST00000234256 ZBTB7CA1YPR0 619 aa22.39■■□□□ 1.17
SLC1A4-201ENST00000234256 MYH16Q9H6N6 1097 aa22.39■■□□□ 1.17
SLC1A4-201ENST00000234256 NOP58Q9Y2X3 529 aaKnown RBP22.38■■□□□ 1.17
SLC1A4-201ENST00000234256 TSHZ2Q9NRE2 1034 aa22.38■■□□□ 1.17
SLC1A4-201ENST00000234256 RTN4Q9NQC3 1192 aaKnown RBP22.38■■□□□ 1.17
SLC1A4-201ENST00000234256 C14orf37Q86TY3 774 aa22.37■■□□□ 1.17
SLC1A4-201ENST00000234256 BECN1Q14457 450 aa22.36■■□□□ 1.17
SLC1A4-201ENST00000234256 FTSJ3Q8IY81 847 aaKnown RBP22.36■■□□□ 1.17
SLC1A4-201ENST00000234256 ATAD2BQ9ULI0 1458 aa22.34■■□□□ 1.17
SLC1A4-201ENST00000234256 TMF1P82094 1093 aa22.33■■□□□ 1.17
SLC1A4-201ENST00000234256 DHX57Q6P158 1386 aaKnown RBP22.33■■□□□ 1.17
SLC1A4-201ENST00000234256 U2SURPO15042 1029 aaKnown RBP22.33■■□□□ 1.16
SLC1A4-201ENST00000234256 SAFB2Q14151 953 aaKnown RBP eCLIP22.32■■□□□ 1.16
SLC1A4-201ENST00000234256 FHOD3Q2V2M9 1422 aa22.32■■□□□ 1.16
SLC1A4-201ENST00000234256 POGKQ9P215 609 aa22.28■■□□□ 1.16
SLC1A4-201ENST00000234256 MAPK8IP3Q9UPT6 1336 aa22.26■■□□□ 1.15
SLC1A4-201ENST00000234256 NUP155O75694 1391 aa22.25■■□□□ 1.15
SLC1A4-201ENST00000234256 ERCC6Q03468 1493 aa22.23■■□□□ 1.15
SLC1A4-201ENST00000234256 TPRNQ4KMQ1 711 aa22.22■■□□□ 1.15
SLC1A4-201ENST00000234256 NUDCQ9Y266 331 aa22.22■■□□□ 1.15
SLC1A4-201ENST00000234256 NCLP19338 710 aaKnown RBP22.21■■□□□ 1.15
SLC1A4-201ENST00000234256 GGT6Q6P531 493 aa22.19■■□□□ 1.14
SLC1A4-201ENST00000234256 FMN1Q68DA7 1419 aa22.19■■□□□ 1.14
SLC1A4-201ENST00000234256 RCAN3Q9UKA8 241 aa22.19■■□□□ 1.14
SLC1A4-201ENST00000234256 ARID4BQ4LE39 1312 aaPredicted RBP22.18■■□□□ 1.14
SLC1A4-201ENST00000234256 A0A0G2JS52 829 aa22.18■■□□□ 1.14
SLC1A4-201ENST00000234256 SOX12O15370 315 aa22.17■■□□□ 1.14
SLC1A4-201ENST00000234256 HNRNPMP52272 730 aaKnown RBP eCLIP22.16■■□□□ 1.14
SLC1A4-201ENST00000234256 MORC1Q86VD1 984 aa22.15■■□□□ 1.14
SLC1A4-201ENST00000234256 DEKP35659 375 aaKnown RBP22.14■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms