RNA–Protein interactions for RNA: ENST00000233573.6

ITGA4-201, Transcript of integrin subunit alpha 4, humanhuman

TSL 1 (best)

Gene ITGA4, Length 2,070 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGA4-201ENST00000233573 ADAMTS12P58397 1594 aa24.67■■□□□ 1.54
ITGA4-201ENST00000233573 CTTNBP2Q8WZ74 1663 aa24.64■■□□□ 1.53
ITGA4-201ENST00000233573 TTBK1Q5TCY1 1321 aaPredicted RBP24.63■■□□□ 1.53
ITGA4-201ENST00000233573 FHAD1B1AJZ9 1412 aa24.63■■□□□ 1.53
ITGA4-201ENST00000233573 SNAPC4Q5SXM2 1469 aa24.61■■□□□ 1.53
ITGA4-201ENST00000233573 APLP2Q06481 763 aa24.53■■□□□ 1.52
ITGA4-201ENST00000233573 ZEB1P37275 1124 aaPredicted RBP24.49■■□□□ 1.51
ITGA4-201ENST00000233573 MAGI1Q96QZ7 1491 aaPredicted RBP24.48■■□□□ 1.51
ITGA4-201ENST00000233573 P3H3Q8IVL6 736 aa24.48■■□□□ 1.51
ITGA4-201ENST00000233573 GRIN2AQ12879 1464 aa24.44■■□□□ 1.5
ITGA4-201ENST00000233573 FHOD3Q2V2M9 1422 aa24.42■■□□□ 1.5
ITGA4-201ENST00000233573 EFCAB5A4FU69 1503 aa24.42■■□□□ 1.5
ITGA4-201ENST00000233573 SYNJ2O15056 1496 aa24.41■■□□□ 1.5
ITGA4-201ENST00000233573 IQGAP2Q13576 1575 aa24.39■■□□□ 1.49
ITGA4-201ENST00000233573 FBLN2P98095 1184 aa24.39■■□□□ 1.49
ITGA4-201ENST00000233573 KANK4Q5T7N3 995 aaPredicted RBP24.39■■□□□ 1.49
ITGA4-201ENST00000233573 CHMP7Q8WUX9 453 aaPredicted RBP24.38■■□□□ 1.49
ITGA4-201ENST00000233573 MAP3K1Q13233 1512 aa24.38■■□□□ 1.49
ITGA4-201ENST00000233573 SAMD9Q5K651 1589 aa24.37■■□□□ 1.49
ITGA4-201ENST00000233573 CEP170Q5SW79 1584 aa24.33■■□□□ 1.49
ITGA4-201ENST00000233573 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.33■■□□□ 1.48
ITGA4-201ENST00000233573 TIAM1Q13009 1591 aa24.32■■□□□ 1.48
ITGA4-201ENST00000233573 PCF11O94913 1555 aaKnown RBP24.3■■□□□ 1.48
ITGA4-201ENST00000233573 KIAA0586Q9BVV6 1533 aa24.29■■□□□ 1.48
ITGA4-201ENST00000233573 CFAP43Q8NDM7 1665 aa24.26■■□□□ 1.47
ITGA4-201ENST00000233573 UGGT2Q9NYU1 1516 aa24.24■■□□□ 1.47
ITGA4-201ENST00000233573 NUP160Q12769 1436 aa24.23■■□□□ 1.47
ITGA4-201ENST00000233573 RRBP1Q9P2E9 1410 aaKnown RBP24.23■■□□□ 1.47
ITGA4-201ENST00000233573 FYCO1Q9BQS8 1478 aa24.23■■□□□ 1.47
ITGA4-201ENST00000233573 CCER1Q8TC90 406 aaPredicted RBP24.23■■□□□ 1.47
ITGA4-201ENST00000233573 CHD1O14646 1710 aa24.22■■□□□ 1.47
ITGA4-201ENST00000233573 CASKIN1Q8WXD9 1431 aa24.22■■□□□ 1.47
ITGA4-201ENST00000233573 ATP1B4Q9UN42 357 aaPredicted RBP24.2■■□□□ 1.47
ITGA4-201ENST00000233573 FMN1Q68DA7 1419 aa24.2■■□□□ 1.46
ITGA4-201ENST00000233573 LRRC9Q6ZRR7 1453 aa24.2■■□□□ 1.46
ITGA4-201ENST00000233573 HNRNPUL2Q1KMD3 747 aaKnown RBP24.18■■□□□ 1.46
ITGA4-201ENST00000233573 DISP1Q96F81 1524 aa24.17■■□□□ 1.46
ITGA4-201ENST00000233573 KIAA0556O60303 1618 aa24.15■■□□□ 1.46
ITGA4-201ENST00000233573 LRRIQ1Q96JM4 1722 aa24.1■■□□□ 1.45
ITGA4-201ENST00000233573 CCNB3Q8WWL7 1395 aa24.08■■□□□ 1.45
ITGA4-201ENST00000233573 JPH4Q96JJ6 628 aa24.07■■□□□ 1.44
ITGA4-201ENST00000233573 PHLDB1Q86UU1 1377 aa24.02■■□□□ 1.44
ITGA4-201ENST00000233573 HECW1Q76N89 1606 aa23.98■■□□□ 1.43
ITGA4-201ENST00000233573 CARMIL2Q6F5E8 1435 aa23.97■■□□□ 1.43
ITGA4-201ENST00000233573 ARID3CA6NKF2 412 aa23.95■■□□□ 1.42
ITGA4-201ENST00000233573 PRG4Q92954 1404 aaPredicted RBP23.94■■□□□ 1.42
ITGA4-201ENST00000233573 CDK13Q14004 1512 aaKnown RBP23.92■■□□□ 1.42
ITGA4-201ENST00000233573 EPRSP07814 1512 aaKnown RBP23.91■■□□□ 1.42
ITGA4-201ENST00000233573 RAPGEF6Q8TEU7 1601 aa23.91■■□□□ 1.42
ITGA4-201ENST00000233573 SHROOM2Q13796 1616 aa23.9■■□□□ 1.42
ITGA4-201ENST00000233573 CCDC18Q5T9S5 1454 aa23.9■■□□□ 1.42
ITGA4-201ENST00000233573 PLB1Q6P1J6 1458 aa23.9■■□□□ 1.42
ITGA4-201ENST00000233573 MAGI3Q5TCQ9 1506 aa23.89■■□□□ 1.41
ITGA4-201ENST00000233573 MTUS2Q5JR59 1369 aa23.88■■□□□ 1.41
ITGA4-201ENST00000233573 CLASP1Q7Z460 1538 aa23.88■■□□□ 1.41
ITGA4-201ENST00000233573 NUP153P49790 1475 aaKnown RBP23.88■■□□□ 1.41
ITGA4-201ENST00000233573 ERCC6L2Q5T890 1561 aa23.86■■□□□ 1.41
ITGA4-201ENST00000233573 EHBP1L1Q8N3D4 1523 aa23.85■■□□□ 1.41
ITGA4-201ENST00000233573 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.85■■□□□ 1.41
ITGA4-201ENST00000233573 DHX57Q6P158 1386 aaKnown RBP23.83■■□□□ 1.4
ITGA4-201ENST00000233573 SUPT6HQ7KZ85 1726 aaKnown RBP23.82■■□□□ 1.4
ITGA4-201ENST00000233573 ARHGEF11O15085 1522 aa23.81■■□□□ 1.4
ITGA4-201ENST00000233573 NCOA2Q15596 1464 aa23.81■■□□□ 1.4
ITGA4-201ENST00000233573 FGD6Q6ZV73 1430 aa23.79■■□□□ 1.4
ITGA4-201ENST00000233573 ABCA8O94911 1581 aa23.78■■□□□ 1.4
ITGA4-201ENST00000233573 CLSPNQ9HAW4 1339 aa23.78■■□□□ 1.4
ITGA4-201ENST00000233573 PTPRGP23470 1445 aa23.77■■□□□ 1.4
ITGA4-201ENST00000233573 ITGAEP38570 1179 aa23.76■■□□□ 1.39
ITGA4-201ENST00000233573 FAM50AQ14320 339 aaKnown RBP23.74■■□□□ 1.39
ITGA4-201ENST00000233573 MYOM3Q5VTT5 1437 aa23.74■■□□□ 1.39
ITGA4-201ENST00000233573 RAB3GAP2Q9H2M9 1393 aa23.71■■□□□ 1.39
ITGA4-201ENST00000233573 SETD5Q9C0A6 1442 aa23.7■■□□□ 1.38
ITGA4-201ENST00000233573 ATP10BO94823 1461 aa23.65■■□□□ 1.38
ITGA4-201ENST00000233573 PTPN23Q9H3S7 1636 aa23.64■■□□□ 1.37
ITGA4-201ENST00000233573 UACAQ9BZF9 1416 aa23.62■■□□□ 1.37
ITGA4-201ENST00000233573 TCOF1Q13428 1488 aaKnown RBP23.62■■□□□ 1.37
ITGA4-201ENST00000233573 CDK11AQ9UQ88 783 aaPredicted RBP23.61■■□□□ 1.37
ITGA4-201ENST00000233573 OSCARQ8IYS5 282 aa23.61■■□□□ 1.37
ITGA4-201ENST00000233573 TROQ12816 1431 aaPredicted RBP23.6■■□□□ 1.37
ITGA4-201ENST00000233573 PTPRKQ15262 1439 aa23.6■■□□□ 1.37
ITGA4-201ENST00000233573 KIF14Q15058 1648 aa23.59■■□□□ 1.37
ITGA4-201ENST00000233573 MAPKBP1O60336 1514 aa23.57■■□□□ 1.36
ITGA4-201ENST00000233573 ABCC2Q92887 1545 aa23.56■■□□□ 1.36
ITGA4-201ENST00000233573 MIA2Q96PC5 1412 aa23.56■■□□□ 1.36
ITGA4-201ENST00000233573 ADCY10Q96PN6 1610 aa23.53■■□□□ 1.36
ITGA4-201ENST00000233573 HFM1A2PYH4 1435 aa23.53■■□□□ 1.36
ITGA4-201ENST00000233573 PLEKHD1A6NEE1 506 aa23.51■■□□□ 1.35
ITGA4-201ENST00000233573 ZNF316A6NFI3 1004 aaPredicted RBP23.46■■□□□ 1.35
ITGA4-201ENST00000233573 NAIPQ13075 1403 aa23.46■■□□□ 1.35
ITGA4-201ENST00000233573 UHRF1BP1LA0JNW5 1464 aa23.44■■□□□ 1.34
ITGA4-201ENST00000233573 ZCCHC11Q5TAX3 1644 aaKnown RBP23.44■■□□□ 1.34
ITGA4-201ENST00000233573 GPATCH8Q9UKJ3 1502 aaKnown RBP23.43■■□□□ 1.34
ITGA4-201ENST00000233573 ABCC10Q5T3U5 1492 aa23.42■■□□□ 1.34
ITGA4-201ENST00000233573 ZNF644Q9H582 1327 aaPredicted RBP23.41■■□□□ 1.34
ITGA4-201ENST00000233573 ITSN2Q9NZM3 1697 aa23.41■■□□□ 1.34
ITGA4-201ENST00000233573 AKNAQ7Z591 1439 aa23.41■■□□□ 1.34
ITGA4-201ENST00000233573 GCC2Q8IWJ2 1684 aa23.41■■□□□ 1.34
ITGA4-201ENST00000233573 CDC42BPAQ5VT25 1732 aa23.4■■□□□ 1.34
ITGA4-201ENST00000233573 KDM5BQ9UGL1 1544 aa23.39■■□□□ 1.33
ITGA4-201ENST00000233573 DNMT1P26358 1616 aaKnown RBP23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms