RNA–Protein interactions for RNA: ENST00000229387.6

RFX4-201, Transcript of regulatory factor X4, humanhuman

TSL 1 (best) BASIC

Gene RFX4, Length 3,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4-201ENST00000229387 NEFLP07196 543 aa8.18□□□□□ -1.1
RFX4-201ENST00000229387 DEKP35659 375 aaKnown RBP8.17□□□□□ -1.1
RFX4-201ENST00000229387 RUSC2Q8N2Y8 1516 aa8.16□□□□□ -1.1
RFX4-201ENST00000229387 CCDC136Q96JN2 1154 aa8.16□□□□□ -1.1
RFX4-201ENST00000229387 RBM19Q9Y4C8 960 aaKnown RBP8.13□□□□□ -1.11
RFX4-201ENST00000229387 CCER1Q8TC90 406 aaPredicted RBP8.12□□□□□ -1.11
RFX4-201ENST00000229387 FANCIQ9NVI1 1328 aa8.12□□□□□ -1.11
RFX4-201ENST00000229387 SMARCA4P51532 1647 aa8.12□□□□□ -1.11
RFX4-201ENST00000229387 NPM1P06748 294 aaKnown RBP eCLIP8.12□□□□□ -1.11
RFX4-201ENST00000229387 CACNB1Q02641 598 aaPredicted RBP8.11□□□□□ -1.11
RFX4-201ENST00000229387 PKD2Q13563 968 aa8.1□□□□□ -1.11
RFX4-201ENST00000229387 NPM2Q86SE8 214 aaKnown RBP8.1□□□□□ -1.11
RFX4-201ENST00000229387 CNKSR2Q8WXI2 1034 aa8.1□□□□□ -1.11
RFX4-201ENST00000229387 TOP2AP11388 1531 aaKnown RBP8.09□□□□□ -1.12
RFX4-201ENST00000229387 HNRNPUL2Q1KMD3 747 aaKnown RBP8.08□□□□□ -1.12
RFX4-201ENST00000229387 SMARCA2P51531 1590 aa8.08□□□□□ -1.12
RFX4-201ENST00000229387 BICRAQ9NZM4 1560 aa8.08□□□□□ -1.12
RFX4-201ENST00000229387 UNC13AQ9UPW8 1703 aa8.07□□□□□ -1.12
RFX4-201ENST00000229387 YTHDC1Q96MU7 727 aaKnown RBP8.07□□□□□ -1.12
RFX4-201ENST00000229387 ZNF316A6NFI3 1004 aaPredicted RBP8.06□□□□□ -1.12
RFX4-201ENST00000229387 GLIPR1L2Q4G1C9 344 aa8.05□□□□□ -1.12
RFX4-201ENST00000229387 PDIA4P13667 645 aaKnown RBP8.05□□□□□ -1.12
RFX4-201ENST00000229387 SLC4A2P04920 1241 aa8.05□□□□□ -1.12
RFX4-201ENST00000229387 PDE4CQ08493 712 aa8.05□□□□□ -1.12
RFX4-201ENST00000229387 WRNQ14191 1432 aaPredicted RBP eCLIP8.04□□□□□ -1.12
RFX4-201ENST00000229387 CEP162Q5TB80 1403 aa8.04□□□□□ -1.12
RFX4-201ENST00000229387 FGD1P98174 961 aa8.04□□□□□ -1.12
RFX4-201ENST00000229387 NBR1Q14596 966 aa8.04□□□□□ -1.12
RFX4-201ENST00000229387 BAZ1BQ9UIG0 1483 aaKnown RBP8.02□□□□□ -1.13
RFX4-201ENST00000229387 ATAD2BQ9ULI0 1458 aa8.02□□□□□ -1.13
RFX4-201ENST00000229387 IFNLR1Q8IU57 520 aaPredicted RBP8.02□□□□□ -1.13
RFX4-201ENST00000229387 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.02□□□□□ -1.13
RFX4-201ENST00000229387 MIER1Q8N108 512 aa8.01□□□□□ -1.13
RFX4-201ENST00000229387 TRHP20396 242 aaPredicted RBP7.99□□□□□ -1.13
RFX4-201ENST00000229387 ZMYND15Q9H091 742 aa7.99□□□□□ -1.13
RFX4-201ENST00000229387 EIF4G1Q04637 1599 aaKnown RBP7.99□□□□□ -1.13
RFX4-201ENST00000229387 ITGAEP38570 1179 aa7.98□□□□□ -1.13
RFX4-201ENST00000229387 ATP1B4Q9UN42 357 aaPredicted RBP7.97□□□□□ -1.13
RFX4-201ENST00000229387 MAPK8IP2Q13387 824 aaPredicted RBP7.96□□□□□ -1.13
RFX4-201ENST00000229387 ATF5Q9Y2D1 282 aaPredicted RBP7.96□□□□□ -1.14
RFX4-201ENST00000229387 AAMPQ13685 434 aa7.96□□□□□ -1.14
RFX4-201ENST00000229387 P3H3Q8IVL6 736 aa7.95□□□□□ -1.14
RFX4-201ENST00000229387 IL27Q8NEV9 243 aa7.95□□□□□ -1.14
RFX4-201ENST00000229387 TNIKQ9UKE5 1360 aa7.95□□□□□ -1.14
RFX4-201ENST00000229387 SYNJ1O43426 1573 aa7.95□□□□□ -1.14
RFX4-201ENST00000229387 C11orf95C9JLR9 678 aaPredicted RBP7.94□□□□□ -1.14
RFX4-201ENST00000229387 RSPH6AQ9H0K4 717 aa7.94□□□□□ -1.14
RFX4-201ENST00000229387 DNAJC5BQ9UF47 199 aa7.93□□□□□ -1.14
RFX4-201ENST00000229387 RAPGEF2Q9Y4G8 1499 aa7.93□□□□□ -1.14
RFX4-201ENST00000229387 TAF7LQ5H9L4 462 aa7.93□□□□□ -1.14
RFX4-201ENST00000229387 VASPP50552 380 aaPredicted RBP7.92□□□□□ -1.14
RFX4-201ENST00000229387 CLIP1P30622 1438 aa7.92□□□□□ -1.14
RFX4-201ENST00000229387 GOLGA3Q08378 1498 aa7.91□□□□□ -1.14
RFX4-201ENST00000229387 BBXQ8WY36 941 aaPredicted RBP7.91□□□□□ -1.14
RFX4-201ENST00000229387 RBM10P98175 930 aaKnown RBP7.9□□□□□ -1.15
RFX4-201ENST00000229387 KANK4Q5T7N3 995 aaPredicted RBP7.9□□□□□ -1.15
RFX4-201ENST00000229387 ARID3AQ99856 593 aa7.9□□□□□ -1.15
RFX4-201ENST00000229387 BCL11BQ9C0K0 894 aaPredicted RBP7.88□□□□□ -1.15
RFX4-201ENST00000229387 SPRYD3Q8NCJ5 442 aa7.87□□□□□ -1.15
RFX4-201ENST00000229387 CEP164Q9UPV0 1460 aa7.86□□□□□ -1.15
RFX4-201ENST00000229387 EEA1Q15075 1411 aa7.85□□□□□ -1.15
RFX4-201ENST00000229387 WASHC2CQ9Y4E1 1318 aa7.84□□□□□ -1.15
RFX4-201ENST00000229387 RGL2O15211 777 aa7.84□□□□□ -1.16
RFX4-201ENST00000229387 A0A0U1RQG5 324 aaPredicted RBP7.83□□□□□ -1.16
RFX4-201ENST00000229387 ARID3CA6NKF2 412 aa7.83□□□□□ -1.16
RFX4-201ENST00000229387 WASHC2AQ641Q2 1341 aa7.83□□□□□ -1.16
RFX4-201ENST00000229387 PEG3Q9GZU2 1588 aa7.82□□□□□ -1.16
RFX4-201ENST00000229387 ATXN8OSP0DMR3 200 aa7.82□□□□□ -1.16
RFX4-201ENST00000229387 MYCNP04198 464 aaPredicted RBP7.81□□□□□ -1.16
RFX4-201ENST00000229387 NOP58Q9Y2X3 529 aaKnown RBP7.81□□□□□ -1.16
RFX4-201ENST00000229387 NCAPD3P42695 1498 aa7.81□□□□□ -1.16
RFX4-201ENST00000229387 ECM2O94769 699 aaPredicted RBP7.8□□□□□ -1.16
RFX4-201ENST00000229387 CUX1P39880 1505 aa7.8□□□□□ -1.16
RFX4-201ENST00000229387 RTL5Q5HYW3 569 aaPredicted RBP7.8□□□□□ -1.16
RFX4-201ENST00000229387 CUX2O14529 1486 aa7.79□□□□□ -1.16
RFX4-201ENST00000229387 VPS8Q8N3P4 1428 aa7.79□□□□□ -1.16
RFX4-201ENST00000229387 FBXO3Q9UK99 471 aa7.79□□□□□ -1.16
RFX4-201ENST00000229387 ZNF326Q5BKZ1 582 aaKnown RBP7.79□□□□□ -1.16
RFX4-201ENST00000229387 RSPH4AQ5TD94 716 aa7.79□□□□□ -1.16
RFX4-201ENST00000229387 FAM50AQ14320 339 aaKnown RBP7.78□□□□□ -1.16
RFX4-201ENST00000229387 NESP48681 1621 aa7.78□□□□□ -1.16
RFX4-201ENST00000229387 KIF27Q86VH2 1401 aa7.78□□□□□ -1.16
RFX4-201ENST00000229387 RRP9O43818 475 aaKnown RBP7.77□□□□□ -1.16
RFX4-201ENST00000229387 USP35Q9P2H5 1018 aa7.77□□□□□ -1.16
RFX4-201ENST00000229387 CDK11AQ9UQ88 783 aaPredicted RBP7.77□□□□□ -1.16
RFX4-201ENST00000229387 KIF21BO75037 1637 aa7.77□□□□□ -1.17
RFX4-201ENST00000229387 BRPF1P55201 1214 aaPredicted RBP7.76□□□□□ -1.17
RFX4-201ENST00000229387 CADPSQ9ULU8 1353 aa7.76□□□□□ -1.17
RFX4-201ENST00000229387 CHGAP10645 457 aaKnown RBP7.76□□□□□ -1.17
RFX4-201ENST00000229387 ARAP1Q96P48 1450 aa7.76□□□□□ -1.17
RFX4-201ENST00000229387 CFTRP13569 1480 aa7.75□□□□□ -1.17
RFX4-201ENST00000229387 RAD54L2Q9Y4B4 1467 aa7.75□□□□□ -1.17
RFX4-201ENST00000229387 FAM43AQ8N2R8 423 aa7.75□□□□□ -1.17
RFX4-201ENST00000229387 IGF1RP08069 1367 aa7.75□□□□□ -1.17
RFX4-201ENST00000229387 TOP2BQ02880 1626 aa7.74□□□□□ -1.17
RFX4-201ENST00000229387 TDRD9Q8NDG6 1382 aaKnown RBP7.74□□□□□ -1.17
RFX4-201ENST00000229387 CARMIL1Q5VZK9 1371 aa7.73□□□□□ -1.17
RFX4-201ENST00000229387 PRXQ9BXM0 1461 aa7.73□□□□□ -1.17
RFX4-201ENST00000229387 BRD2P25440 801 aaKnown RBP7.73□□□□□ -1.17
RFX4-201ENST00000229387 HIRIP3Q9BW71 556 aaPredicted RBP7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms