RNA–Protein interactions for RNA: ENST00000225842.3

CCL1-201, Transcript of C-C motif chemokine ligand 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCL1, Length 592 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL1-201ENST00000225842 SHROOM4Q9ULL8 1493 aa13.97□□□□□ -0.17
CCL1-201ENST00000225842 CHGAP10645 457 aaKnown RBP13.95□□□□□ -0.18
CCL1-201ENST00000225842 TPRNQ4KMQ1 711 aa13.95□□□□□ -0.18
CCL1-201ENST00000225842 EIF4G1Q04637 1599 aaKnown RBP13.95□□□□□ -0.18
CCL1-201ENST00000225842 MYO15BQ96JP2 1530 aa13.94□□□□□ -0.18
CCL1-201ENST00000225842 PLEKHG5O94827 1062 aa13.9□□□□□ -0.18
CCL1-201ENST00000225842 ZBTB47Q9UFB7 747 aaPredicted RBP13.88□□□□□ -0.19
CCL1-201ENST00000225842 CUX2O14529 1486 aa13.86□□□□□ -0.19
CCL1-201ENST00000225842 TRIM41Q8WV44 630 aa13.84□□□□□ -0.19
CCL1-201ENST00000225842 HS6ST3Q8IZP7 471 aa13.75□□□□□ -0.21
CCL1-201ENST00000225842 RNF25Q96BH1 459 aaPredicted RBP13.71□□□□□ -0.21
CCL1-201ENST00000225842 ERCC6Q03468 1493 aa13.7□□□□□ -0.22
CCL1-201ENST00000225842 SCRIBQ14160 1630 aa13.68□□□□□ -0.22
CCL1-201ENST00000225842 GSE1Q14687 1217 aa13.68□□□□□ -0.22
CCL1-201ENST00000225842 NBR1Q14596 966 aa13.66□□□□□ -0.22
CCL1-201ENST00000225842 NUBP1P53384 320 aa13.63□□□□□ -0.23
CCL1-201ENST00000225842 DCAF8Q5TAQ9 597 aa13.62□□□□□ -0.23
CCL1-201ENST00000225842 NKX1-1Q15270 411 aaPredicted RBP13.6□□□□□ -0.23
CCL1-201ENST00000225842 RIOK3O14730 519 aaKnown RBP13.59□□□□□ -0.23
CCL1-201ENST00000225842 STK25O00506 426 aa13.52□□□□□ -0.25
CCL1-201ENST00000225842 GTPBP6O43824 516 aaPredicted RBP13.52□□□□□ -0.25
CCL1-201ENST00000225842 DCAF1Q9Y4B6 1507 aa13.5□□□□□ -0.25
CCL1-201ENST00000225842 SPDYE1Q8NFV5 336 aaPredicted RBP13.49□□□□□ -0.25
CCL1-201ENST00000225842 FAM212AQ96EL1 285 aa13.49□□□□□ -0.25
CCL1-201ENST00000225842 CACNB1Q02641 598 aaPredicted RBP13.47□□□□□ -0.25
CCL1-201ENST00000225842 CLEC11AQ9Y240 323 aa13.47□□□□□ -0.25
CCL1-201ENST00000225842 ZCCHC6Q5VYS8 1495 aaKnown RBP13.47□□□□□ -0.25
CCL1-201ENST00000225842 VGFO15240 615 aaPredicted RBP13.46□□□□□ -0.25
CCL1-201ENST00000225842 CREBZFQ9NS37 354 aa13.46□□□□□ -0.25
CCL1-201ENST00000225842 PRR29P0C7W0 189 aa13.42□□□□□ -0.26
CCL1-201ENST00000225842 MNX1P50219 401 aaPredicted RBP13.41□□□□□ -0.26
CCL1-201ENST00000225842 RASEFQ8IZ41 740 aa13.4□□□□□ -0.26
CCL1-201ENST00000225842 STK24Q9Y6E0 443 aa13.4□□□□□ -0.26
CCL1-201ENST00000225842 BCL11BQ9C0K0 894 aaPredicted RBP13.39□□□□□ -0.27
CCL1-201ENST00000225842 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.38□□□□□ -0.27
CCL1-201ENST00000225842 CHRM1P11229 460 aaPredicted RBP13.38□□□□□ -0.27
CCL1-201ENST00000225842 ZFP91Q96JP5 570 aaPredicted RBP13.38□□□□□ -0.27
CCL1-201ENST00000225842 AKT1S1Q96B36 256 aa13.37□□□□□ -0.27
CCL1-201ENST00000225842 PYGBP11216 843 aa13.35□□□□□ -0.27
CCL1-201ENST00000225842 NESP48681 1621 aa13.34□□□□□ -0.27
CCL1-201ENST00000225842 NCAPD3P42695 1498 aa13.34□□□□□ -0.27
CCL1-201ENST00000225842 SGIP1Q9BQI5 828 aa13.32□□□□□ -0.28
CCL1-201ENST00000225842 RBM42Q9BTD8 480 aaKnown RBP13.32□□□□□ -0.28
CCL1-201ENST00000225842 REM2Q8IYK8 340 aaPredicted RBP13.29□□□□□ -0.28
CCL1-201ENST00000225842 RYDENQ9NUL5 291 aaKnown RBP13.28□□□□□ -0.28
CCL1-201ENST00000225842 THOC2Q8NI27 1593 aaKnown RBP13.24□□□□□ -0.29
CCL1-201ENST00000225842 ATAD2BQ9ULI0 1458 aa13.19□□□□□ -0.3
CCL1-201ENST00000225842 SMARCA2P51531 1590 aa13.18□□□□□ -0.3
CCL1-201ENST00000225842 TULP1O00294 542 aaPredicted RBP13.17□□□□□ -0.3
CCL1-201ENST00000225842 P3H3Q8IVL6 736 aa13.17□□□□□ -0.3
CCL1-201ENST00000225842 TIMELESSQ9UNS1 1208 aa13.17□□□□□ -0.3
CCL1-201ENST00000225842 PITPNM1O00562 1244 aa13.15□□□□□ -0.3
CCL1-201ENST00000225842 CADPS2Q86UW7 1296 aa13.14□□□□□ -0.31
CCL1-201ENST00000225842 GTF3C3Q9Y5Q9 886 aa13.14□□□□□ -0.31
CCL1-201ENST00000225842 TSPYL2Q9H2G4 693 aaPredicted RBP13.13□□□□□ -0.31
CCL1-201ENST00000225842 WDR70Q9NW82 654 aa13.13□□□□□ -0.31
CCL1-201ENST00000225842 PDS5BQ9NTI5 1447 aa13.13□□□□□ -0.31
CCL1-201ENST00000225842 KCNV2Q8TDN2 545 aa13.11□□□□□ -0.31
CCL1-201ENST00000225842 HMGXB3Q12766 1538 aa13.1□□□□□ -0.31
CCL1-201ENST00000225842 ZNF467Q7Z7K2 595 aaPredicted RBP13.1□□□□□ -0.31
CCL1-201ENST00000225842 LAMC3Q9Y6N6 1575 aa13.07□□□□□ -0.32
CCL1-201ENST00000225842 PDAP1Q13442 181 aaKnown RBP13.06□□□□□ -0.32
CCL1-201ENST00000225842 CHADLQ6NUI6 762 aa13.06□□□□□ -0.32
CCL1-201ENST00000225842 BAZ1AQ9NRL2 1556 aaPredicted RBP13.06□□□□□ -0.32
CCL1-201ENST00000225842 PCDHB8Q9UN66 801 aa13.05□□□□□ -0.32
CCL1-201ENST00000225842 PCDHB13Q9Y5F0 798 aa13.05□□□□□ -0.32
CCL1-201ENST00000225842 LMOD2Q6P5Q4 547 aa13.04□□□□□ -0.32
CCL1-201ENST00000225842 BAZ1BQ9UIG0 1483 aaKnown RBP13.03□□□□□ -0.32
CCL1-201ENST00000225842 TMEM132AQ24JP5 1023 aa13.02□□□□□ -0.33
CCL1-201ENST00000225842 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.01□□□□□ -0.33
CCL1-201ENST00000225842 MRC2Q9UBG0 1479 aa13.01□□□□□ -0.33
CCL1-201ENST00000225842 KIF21AQ7Z4S6 1674 aa13□□□□□ -0.33
CCL1-201ENST00000225842 MFRPQ9BY79 579 aa12.99□□□□□ -0.33
CCL1-201ENST00000225842 PSEN1P49768 467 aa12.98□□□□□ -0.33
CCL1-201ENST00000225842 CYB5RLQ6IPT4 315 aa12.97□□□□□ -0.33
CCL1-201ENST00000225842 FARP1Q9Y4F1 1045 aaPredicted RBP12.97□□□□□ -0.33
CCL1-201ENST00000225842 RIMBP3CA6NJZ7 1639 aa12.95□□□□□ -0.34
CCL1-201ENST00000225842 RIMBP3BA6NNM3 1639 aa12.95□□□□□ -0.34
CCL1-201ENST00000225842 RIMBP3Q9UFD9 1639 aa12.95□□□□□ -0.34
CCL1-201ENST00000225842 WDR62O43379 1518 aa12.95□□□□□ -0.34
CCL1-201ENST00000225842 CADPSQ9ULU8 1353 aa12.94□□□□□ -0.34
CCL1-201ENST00000225842 SMARCA4P51532 1647 aa12.92□□□□□ -0.34
CCL1-201ENST00000225842 ZNF579Q8NAF0 562 aaKnown RBP12.92□□□□□ -0.34
CCL1-201ENST00000225842 PPP1R37O75864 691 aa12.91□□□□□ -0.34
CCL1-201ENST00000225842 CCDC61Q9Y6R9 512 aa12.91□□□□□ -0.34
CCL1-201ENST00000225842 ARHGEF11O15085 1522 aa12.89□□□□□ -0.35
CCL1-201ENST00000225842 ERICH6Q7L0X2 663 aa12.86□□□□□ -0.35
CCL1-201ENST00000225842 EFCAB3Q8N7B9 438 aa12.86□□□□□ -0.35
CCL1-201ENST00000225842 ARHGEF1Q92888 912 aaKnown RBP12.86□□□□□ -0.35
CCL1-201ENST00000225842 E2F4Q16254 413 aa12.84□□□□□ -0.35
CCL1-201ENST00000225842 IFNL1Q8IU54 200 aa12.84□□□□□ -0.35
CCL1-201ENST00000225842 CABP2Q9NPB3 220 aa12.84□□□□□ -0.35
CCL1-201ENST00000225842 PRKAR2AP13861 404 aaKnown RBP12.83□□□□□ -0.36
CCL1-201ENST00000225842 BRPF1P55201 1214 aaPredicted RBP12.83□□□□□ -0.36
CCL1-201ENST00000225842 NLRP6P59044 892 aa12.83□□□□□ -0.36
CCL1-201ENST00000225842 FBXO22Q8NEZ5 403 aa12.83□□□□□ -0.36
CCL1-201ENST00000225842 PHF8Q9UPP1 1060 aa12.83□□□□□ -0.36
CCL1-201ENST00000225842 CEP164Q9UPV0 1460 aa12.83□□□□□ -0.36
CCL1-201ENST00000225842 SEMA3EO15041 775 aa12.82□□□□□ -0.36
CCL1-201ENST00000225842 ZC3H15Q8WU90 426 aaKnown RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms