RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 TRIM26Q12899 539 aaPredicted RBP28.38■■■□□ 2.13
VIM-201ENST00000224237 PCGF6Q9BYE7 350 aa28.35■■■□□ 2.13
VIM-201ENST00000224237 MAGI1Q96QZ7 1491 aaPredicted RBP28.34■■■□□ 2.13
VIM-201ENST00000224237 EFCAB5A4FU69 1503 aa28.3■■■□□ 2.12
VIM-201ENST00000224237 PPARGC1BQ86YN6 1023 aaKnown RBP28.29■■■□□ 2.12
VIM-201ENST00000224237 GRIN2AQ12879 1464 aa28.28■■■□□ 2.12
VIM-201ENST00000224237 SYNJ2O15056 1496 aa28.26■■■□□ 2.11
VIM-201ENST00000224237 CHMP7Q8WUX9 453 aaPredicted RBP28.21■■■□□ 2.11
VIM-201ENST00000224237 FBLN2P98095 1184 aa28.2■■■□□ 2.1
VIM-201ENST00000224237 P3H3Q8IVL6 736 aa28.19■■■□□ 2.1
VIM-201ENST00000224237 APLP2Q06481 763 aa28.19■■■□□ 2.1
VIM-201ENST00000224237 IQGAP2Q13576 1575 aa28.17■■■□□ 2.1
VIM-201ENST00000224237 SAMD9Q5K651 1589 aa28.16■■■□□ 2.1
VIM-201ENST00000224237 FHOD3Q2V2M9 1422 aa28.15■■■□□ 2.1
VIM-201ENST00000224237 CEP170Q5SW79 1584 aa28.13■■■□□ 2.09
VIM-201ENST00000224237 TTBK1Q5TCY1 1321 aaPredicted RBP28.1■■■□□ 2.09
VIM-201ENST00000224237 KIAA0586Q9BVV6 1533 aa28.09■■■□□ 2.09
VIM-201ENST00000224237 NUP160Q12769 1436 aa28.05■■■□□ 2.08
VIM-201ENST00000224237 CHD1O14646 1710 aa28.04■■■□□ 2.08
VIM-201ENST00000224237 UGGT2Q9NYU1 1516 aa28.03■■■□□ 2.08
VIM-201ENST00000224237 FMN1Q68DA7 1419 aa28.03■■■□□ 2.08
VIM-201ENST00000224237 PCF11O94913 1555 aaKnown RBP28.01■■■□□ 2.08
VIM-201ENST00000224237 MAP3K1Q13233 1512 aa27.99■■■□□ 2.07
VIM-201ENST00000224237 FYCO1Q9BQS8 1478 aa27.98■■■□□ 2.07
VIM-201ENST00000224237 CASKIN1Q8WXD9 1431 aa27.96■■■□□ 2.07
VIM-201ENST00000224237 TIAM1Q13009 1591 aa27.93■■■□□ 2.06
VIM-201ENST00000224237 DISP1Q96F81 1524 aa27.92■■■□□ 2.06
VIM-201ENST00000224237 KIAA0556O60303 1618 aa27.9■■■□□ 2.06
VIM-201ENST00000224237 CFAP43Q8NDM7 1665 aa27.89■■■□□ 2.06
VIM-201ENST00000224237 KANK4Q5T7N3 995 aaPredicted RBP27.87■■■□□ 2.05
VIM-201ENST00000224237 ATP1B4Q9UN42 357 aaPredicted RBP27.85■■■□□ 2.05
VIM-201ENST00000224237 JPH4Q96JJ6 628 aa27.84■■■□□ 2.05
VIM-201ENST00000224237 LRRC9Q6ZRR7 1453 aa27.8■■■□□ 2.04
VIM-201ENST00000224237 LRRIQ1Q96JM4 1722 aa27.75■■■□□ 2.03
VIM-201ENST00000224237 CARMIL2Q6F5E8 1435 aa27.74■■■□□ 2.03
VIM-201ENST00000224237 HECW1Q76N89 1606 aa27.74■■■□□ 2.03
VIM-201ENST00000224237 CCDC18Q5T9S5 1454 aa27.7■■■□□ 2.02
VIM-201ENST00000224237 PRG4Q92954 1404 aaPredicted RBP27.69■■■□□ 2.02
VIM-201ENST00000224237 CLASP1Q7Z460 1538 aa27.68■■■□□ 2.02
VIM-201ENST00000224237 SHROOM2Q13796 1616 aa27.67■■■□□ 2.02
VIM-201ENST00000224237 RRBP1Q9P2E9 1410 aaKnown RBP27.63■■■□□ 2.01
VIM-201ENST00000224237 RAPGEF6Q8TEU7 1601 aa27.62■■■□□ 2.01
VIM-201ENST00000224237 EPRSP07814 1512 aaKnown RBP27.61■■■□□ 2.01
VIM-201ENST00000224237 ERCC6L2Q5T890 1561 aa27.6■■■□□ 2.01
VIM-201ENST00000224237 ARID3CA6NKF2 412 aa27.59■■■□□ 2.01
VIM-201ENST00000224237 PLB1Q6P1J6 1458 aa27.59■■■□□ 2.01
VIM-201ENST00000224237 CDK13Q14004 1512 aaKnown RBP27.58■■■□□ 2.01
VIM-201ENST00000224237 MTUS2Q5JR59 1369 aa27.58■■■□□ 2.01
VIM-201ENST00000224237 HRCP23327 699 aa27.57■■■□□ 2
VIM-201ENST00000224237 EHBP1L1Q8N3D4 1523 aa27.57■■■□□ 2
VIM-201ENST00000224237 NUP153P49790 1475 aaKnown RBP27.56■■■□□ 2
VIM-201ENST00000224237 CCNB3Q8WWL7 1395 aa27.53■■■□□ 2
VIM-201ENST00000224237 PHLDB1Q86UU1 1377 aa27.52■■■□□ 2
VIM-201ENST00000224237 MAGI3Q5TCQ9 1506 aa27.52■■■□□ 2
VIM-201ENST00000224237 SUPT6HQ7KZ85 1726 aaKnown RBP27.49■■□□□ 1.99
VIM-201ENST00000224237 PTPRGP23470 1445 aa27.49■■□□□ 1.99
VIM-201ENST00000224237 ABCA8O94911 1581 aa27.49■■□□□ 1.99
VIM-201ENST00000224237 HNRNPUL2Q1KMD3 747 aaKnown RBP27.44■■□□□ 1.98
VIM-201ENST00000224237 NCOA2Q15596 1464 aa27.43■■□□□ 1.98
VIM-201ENST00000224237 OSCARQ8IYS5 282 aa27.41■■□□□ 1.98
VIM-201ENST00000224237 ARHGEF11O15085 1522 aa27.4■■□□□ 1.98
VIM-201ENST00000224237 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.38■■□□□ 1.97
VIM-201ENST00000224237 CDK11AQ9UQ88 783 aaPredicted RBP27.36■■□□□ 1.97
VIM-201ENST00000224237 MYOM3Q5VTT5 1437 aa27.34■■□□□ 1.97
VIM-201ENST00000224237 FGD6Q6ZV73 1430 aa27.34■■□□□ 1.97
VIM-201ENST00000224237 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.34■■□□□ 1.97
VIM-201ENST00000224237 UACAQ9BZF9 1416 aa27.33■■□□□ 1.97
VIM-201ENST00000224237 ATP10BO94823 1461 aa27.31■■□□□ 1.96
VIM-201ENST00000224237 ZEB1P37275 1124 aaPredicted RBP27.29■■□□□ 1.96
VIM-201ENST00000224237 TROQ12816 1431 aaPredicted RBP27.28■■□□□ 1.96
VIM-201ENST00000224237 FAM50AQ14320 339 aaKnown RBP27.27■■□□□ 1.96
VIM-201ENST00000224237 ABCC2Q92887 1545 aa27.26■■□□□ 1.95
VIM-201ENST00000224237 CCER1Q8TC90 406 aaPredicted RBP27.23■■□□□ 1.95
VIM-201ENST00000224237 ADCY10Q96PN6 1610 aa27.23■■□□□ 1.95
VIM-201ENST00000224237 ITGAEP38570 1179 aa27.21■■□□□ 1.95
VIM-201ENST00000224237 PTPN23Q9H3S7 1636 aa27.21■■□□□ 1.95
VIM-201ENST00000224237 MIA2Q96PC5 1412 aa27.2■■□□□ 1.94
VIM-201ENST00000224237 KIF14Q15058 1648 aa27.19■■□□□ 1.94
VIM-201ENST00000224237 TCOF1Q13428 1488 aaKnown RBP27.17■■□□□ 1.94
VIM-201ENST00000224237 PLEKHD1A6NEE1 506 aa27.16■■□□□ 1.94
VIM-201ENST00000224237 UHRF1BP1LA0JNW5 1464 aa27.14■■□□□ 1.94
VIM-201ENST00000224237 ITSN2Q9NZM3 1697 aa27.11■■□□□ 1.93
VIM-201ENST00000224237 ZCCHC11Q5TAX3 1644 aaKnown RBP27.1■■□□□ 1.93
VIM-201ENST00000224237 KDM5BQ9UGL1 1544 aa27.07■■□□□ 1.92
VIM-201ENST00000224237 GPATCH8Q9UKJ3 1502 aaKnown RBP27.03■■□□□ 1.92
VIM-201ENST00000224237 ABCC10Q5T3U5 1492 aa27.03■■□□□ 1.92
VIM-201ENST00000224237 SETD5Q9C0A6 1442 aa27.03■■□□□ 1.92
VIM-201ENST00000224237 RAB3GAP2Q9H2M9 1393 aa27■■□□□ 1.91
VIM-201ENST00000224237 PTPRKQ15262 1439 aa27■■□□□ 1.91
VIM-201ENST00000224237 CDC42BPAQ5VT25 1732 aa26.98■■□□□ 1.91
VIM-201ENST00000224237 ZNF644Q9H582 1327 aaPredicted RBP26.97■■□□□ 1.91
VIM-201ENST00000224237 CFDP1Q9UEE9 299 aaPredicted RBP26.96■■□□□ 1.91
VIM-201ENST00000224237 HFM1A2PYH4 1435 aa26.94■■□□□ 1.9
VIM-201ENST00000224237 DHX57Q6P158 1386 aaKnown RBP26.94■■□□□ 1.9
VIM-201ENST00000224237 DNMT1P26358 1616 aaKnown RBP26.93■■□□□ 1.9
VIM-201ENST00000224237 CAMSAP2Q08AD1 1489 aa26.93■■□□□ 1.9
VIM-201ENST00000224237 TTC37Q6PGP7 1564 aa26.93■■□□□ 1.9
VIM-201ENST00000224237 KCNH8Q96L42 1107 aa26.91■■□□□ 1.9
VIM-201ENST00000224237 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.91■■□□□ 1.94e-7■■□□□ 11.4
VIM-201ENST00000224237 CLSPNQ9HAW4 1339 aa26.9■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms