RNA–Protein interactions for RNA: ENST00000220562.8

EXTL3-201, Transcript of exostosin like glycosyltransferase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene EXTL3, Length 6,483 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXTL3-201ENST00000220562 CLIP1P30622 1438 aa23.68■■□□□ 1.38
EXTL3-201ENST00000220562 EIF4G2P78344 907 aaKnown RBP eCLIP23.68■■□□□ 1.38
EXTL3-201ENST00000220562 CHMP7Q8WUX9 453 aaPredicted RBP23.67■■□□□ 1.38
EXTL3-201ENST00000220562 GLIPR1L2Q4G1C9 344 aa23.65■■□□□ 1.38
EXTL3-201ENST00000220562 A0A0G2JS52 829 aa23.63■■□□□ 1.37
EXTL3-201ENST00000220562 PLEKHG5O94827 1062 aa23.62■■□□□ 1.37
EXTL3-201ENST00000220562 C14orf37Q86TY3 774 aa23.58■■□□□ 1.37
EXTL3-201ENST00000220562 DDRGK1Q96HY6 314 aa23.55■■□□□ 1.36
EXTL3-201ENST00000220562 KCNH8Q96L42 1107 aa23.54■■□□□ 1.36
EXTL3-201ENST00000220562 PPP1R15AO75807 674 aaPredicted RBP23.54■■□□□ 1.36
EXTL3-201ENST00000220562 SENP3-EIF4A1A0A087X0R7 540 aa23.53■■□□□ 1.36
EXTL3-201ENST00000220562 BECN1Q14457 450 aa23.53■■□□□ 1.36
EXTL3-201ENST00000220562 RGL3Q3MIN7 710 aa23.51■■□□□ 1.35
EXTL3-201ENST00000220562 RSF1Q96T23 1441 aaPredicted RBP23.5■■□□□ 1.35
EXTL3-201ENST00000220562 GOLGA3Q08378 1498 aa23.49■■□□□ 1.35
EXTL3-201ENST00000220562 NCLP19338 710 aaKnown RBP23.47■■□□□ 1.35
EXTL3-201ENST00000220562 CEP162Q5TB80 1403 aa23.46■■□□□ 1.35
EXTL3-201ENST00000220562 CDK11BP21127 795 aaKnown RBP23.45■■□□□ 1.34
EXTL3-201ENST00000220562 MYO15BQ96JP2 1530 aa23.43■■□□□ 1.34
EXTL3-201ENST00000220562 PLEKHD1A6NEE1 506 aa23.42■■□□□ 1.34
EXTL3-201ENST00000220562 CFAP53Q96M91 514 aa23.42■■□□□ 1.34
EXTL3-201ENST00000220562 TRIM44Q96DX7 344 aaPredicted RBP23.4■■□□□ 1.34
EXTL3-201ENST00000220562 KNSTRNQ9Y448 316 aa23.4■■□□□ 1.34
EXTL3-201ENST00000220562 PPM1GO15355 546 aaPredicted RBP23.38■■□□□ 1.33
EXTL3-201ENST00000220562 GOLGA6L22H0YM25 854 aa23.38■■□□□ 1.33
EXTL3-201ENST00000220562 SUPT16HQ9Y5B9 1047 aaKnown RBP23.36■■□□□ 1.33
EXTL3-201ENST00000220562 CARD11Q9BXL7 1154 aa23.35■■□□□ 1.33
EXTL3-201ENST00000220562 CCDC180Q9P1Z9 1646 aa23.35■■□□□ 1.33
EXTL3-201ENST00000220562 FTSJ3Q8IY81 847 aaKnown RBP23.35■■□□□ 1.33
EXTL3-201ENST00000220562 CDCA8Q53HL2 280 aa23.33■■□□□ 1.33
EXTL3-201ENST00000220562 CASC1Q6TDU7 716 aa23.33■■□□□ 1.33
EXTL3-201ENST00000220562 TPRNQ4KMQ1 711 aa23.33■■□□□ 1.32
EXTL3-201ENST00000220562 EEA1Q15075 1411 aa23.32■■□□□ 1.32
EXTL3-201ENST00000220562 LAS1LQ9Y4W2 734 aaKnown RBP23.32■■□□□ 1.32
EXTL3-201ENST00000220562 CFDP1Q9UEE9 299 aaPredicted RBP23.31■■□□□ 1.32
EXTL3-201ENST00000220562 ANP32EQ9BTT0 268 aa23.3■■□□□ 1.32
EXTL3-201ENST00000220562 NEUROD2Q15784 382 aa23.3■■□□□ 1.32
EXTL3-201ENST00000220562 HAP1P54257 671 aaPredicted RBP23.28■■□□□ 1.32
EXTL3-201ENST00000220562 ARID4BQ4LE39 1312 aaPredicted RBP23.28■■□□□ 1.32
EXTL3-201ENST00000220562 RB1CC1Q8TDY2 1594 aa23.26■■□□□ 1.31
EXTL3-201ENST00000220562 MAPK8IP3Q9UPT6 1336 aa23.25■■□□□ 1.31
EXTL3-201ENST00000220562 PTMAP06454 111 aaKnown RBP23.25■■□□□ 1.31
EXTL3-201ENST00000220562 WRNQ14191 1432 aaPredicted RBP eCLIP23.24■■□□□ 1.31
EXTL3-201ENST00000220562 ZRSR1Q15695 479 aaKnown RBP23.23■■□□□ 1.31
EXTL3-201ENST00000220562 SIN3AQ96ST3 1273 aa23.21■■□□□ 1.31
EXTL3-201ENST00000220562 CC2D1BQ5T0F9 858 aaKnown RBP23.2■■□□□ 1.31
EXTL3-201ENST00000220562 TNNT2P45379 298 aaPredicted RBP23.19■■□□□ 1.3
EXTL3-201ENST00000220562 FRAT1Q92837 279 aaPredicted RBP23.19■■□□□ 1.3
EXTL3-201ENST00000220562 KIF27Q86VH2 1401 aa23.19■■□□□ 1.3
EXTL3-201ENST00000220562 RGS3P49796 1198 aa23.18■■□□□ 1.3
EXTL3-201ENST00000220562 CEP164Q9UPV0 1460 aa23.18■■□□□ 1.3
EXTL3-201ENST00000220562 BAZ1BQ9UIG0 1483 aaKnown RBP23.17■■□□□ 1.3
EXTL3-201ENST00000220562 NUDCQ9Y266 331 aa23.17■■□□□ 1.3
EXTL3-201ENST00000220562 POGKQ9P215 609 aa23.16■■□□□ 1.3
EXTL3-201ENST00000220562 TNIKQ9UKE5 1360 aa23.16■■□□□ 1.3
EXTL3-201ENST00000220562 PPP4R2Q9NY27 417 aa23.16■■□□□ 1.3
EXTL3-201ENST00000220562 DNTTIP2Q5QJE6 756 aaKnown RBP23.14■■□□□ 1.3
EXTL3-201ENST00000220562 TAOK2Q9UL54 1235 aa23.11■■□□□ 1.29
EXTL3-201ENST00000220562 TULP1O00294 542 aaPredicted RBP23.11■■□□□ 1.29
EXTL3-201ENST00000220562 LMOD2Q6P5Q4 547 aa23.1■■□□□ 1.29
EXTL3-201ENST00000220562 U2SURPO15042 1029 aaKnown RBP23.08■■□□□ 1.29
EXTL3-201ENST00000220562 HSP90AB1P08238 724 aaKnown RBP23.07■■□□□ 1.28
EXTL3-201ENST00000220562 OS9Q13438 667 aaPredicted RBP23.06■■□□□ 1.28
EXTL3-201ENST00000220562 NOP58Q9Y2X3 529 aaKnown RBP23.06■■□□□ 1.28
EXTL3-201ENST00000220562 PLCB2Q00722 1185 aa23.03■■□□□ 1.28
EXTL3-201ENST00000220562 CCNB3Q8WWL7 1395 aa23.02■■□□□ 1.28
EXTL3-201ENST00000220562 B4GALNT3Q6L9W6 998 aa23.02■■□□□ 1.28
EXTL3-201ENST00000220562 NAP1L5Q96NT1 182 aaPredicted RBP23.01■■□□□ 1.27
EXTL3-201ENST00000220562 CHMP4BQ9H444 224 aaKnown RBP23.01■■□□□ 1.27
EXTL3-201ENST00000220562 EIF4G1Q04637 1599 aaKnown RBP23■■□□□ 1.27
EXTL3-201ENST00000220562 TMF1P82094 1093 aa23■■□□□ 1.27
EXTL3-201ENST00000220562 RTN4Q9NQC3 1192 aaKnown RBP23■■□□□ 1.27
EXTL3-201ENST00000220562 DCAF11Q8TEB1 546 aa22.99■■□□□ 1.27
EXTL3-201ENST00000220562 MS4A1P11836 297 aa22.99■■□□□ 1.27
EXTL3-201ENST00000220562 PNNQ9H307 717 aaKnown RBP22.98■■□□□ 1.27
EXTL3-201ENST00000220562 NPHP1O15259 732 aa22.97■■□□□ 1.27
EXTL3-201ENST00000220562 ERICH6BQ5W0A0 696 aa22.97■■□□□ 1.27
EXTL3-201ENST00000220562 FGD1P98174 961 aa22.96■■□□□ 1.27
EXTL3-201ENST00000220562 ERCC6Q03468 1493 aa22.96■■□□□ 1.27
EXTL3-201ENST00000220562 NAP1L2Q9ULW6 460 aaPredicted RBP22.96■■□□□ 1.27
EXTL3-201ENST00000220562 KCNJ4P48050 445 aa22.95■■□□□ 1.26
EXTL3-201ENST00000220562 KANK1Q14678 1352 aa22.92■■□□□ 1.26
EXTL3-201ENST00000220562 GOLGA6L6A8MZA4 724 aa22.91■■□□□ 1.26
EXTL3-201ENST00000220562 HSCBQ8IWL3 235 aa22.9■■□□□ 1.26
EXTL3-201ENST00000220562 FHAD1B1AJZ9 1412 aa22.9■■□□□ 1.26
EXTL3-201ENST00000220562 SOX12O15370 315 aa22.89■■□□□ 1.25
EXTL3-201ENST00000220562 NACADO15069 1562 aa22.89■■□□□ 1.25
EXTL3-201ENST00000220562 SRPK2P78362 688 aaKnown RBP22.88■■□□□ 1.25
EXTL3-201ENST00000220562 SPRYD3Q8NCJ5 442 aa22.87■■□□□ 1.25
EXTL3-201ENST00000220562 MORC1Q86VD1 984 aa22.87■■□□□ 1.25
EXTL3-201ENST00000220562 GOLGA2Q08379 1002 aa22.85■■□□□ 1.25
EXTL3-201ENST00000220562 SAFB2Q14151 953 aaKnown RBP eCLIP22.85■■□□□ 1.25
EXTL3-201ENST00000220562 HSPA5P11021 654 aaKnown RBP22.83■■□□□ 1.25
EXTL3-201ENST00000220562 MLECQ14165 292 aa22.81■■□□□ 1.24
EXTL3-201ENST00000220562 GOLGA6L4A6NEF3 574 aa22.81■■□□□ 1.24
EXTL3-201ENST00000220562 MCCP23508 829 aa22.8■■□□□ 1.24
EXTL3-201ENST00000220562 SETD5Q9C0A6 1442 aa22.8■■□□□ 1.24
EXTL3-201ENST00000220562 CARMIL1Q5VZK9 1371 aa22.79■■□□□ 1.24
EXTL3-201ENST00000220562 CUX2O14529 1486 aa22.79■■□□□ 1.24
EXTL3-201ENST00000220562 ARHGAP35Q9NRY4 1499 aa22.78■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms