RNA–Protein interactions for RNA: ENST00000219084.10

CHD9-201, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 1 (best)

Gene CHD9, Length 8,739 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-201ENST00000219084 VPS8Q8N3P4 1428 aa5.82□□□□□ -1.48
CHD9-201ENST00000219084 SCAF1Q9H7N4 1312 aaKnown RBP5.82□□□□□ -1.48
CHD9-201ENST00000219084 CNGB1Q14028 1251 aaPredicted RBP5.82□□□□□ -1.48
CHD9-201ENST00000219084 CFAP44Q96MT7 982 aa5.82□□□□□ -1.48
CHD9-201ENST00000219084 SMARCA4P51532 1647 aa5.82□□□□□ -1.48
CHD9-201ENST00000219084 ARHGAP35Q9NRY4 1499 aa5.82□□□□□ -1.48
CHD9-201ENST00000219084 MRS2Q9HD23 443 aa5.81□□□□□ -1.48
CHD9-201ENST00000219084 WIZO95785 1651 aa5.81□□□□□ -1.48
CHD9-201ENST00000219084 CCER2I3L3R5 266 aa5.8□□□□□ -1.48
CHD9-201ENST00000219084 MS4A1P11836 297 aa5.8□□□□□ -1.48
CHD9-201ENST00000219084 DDX10Q13206 875 aaKnown RBP5.8□□□□□ -1.48
CHD9-201ENST00000219084 CCNB3Q8WWL7 1395 aa5.8□□□□□ -1.48
CHD9-201ENST00000219084 TSPY4P0CV99 314 aa5.8□□□□□ -1.48
CHD9-201ENST00000219084 TSPY10P0CW01 314 aa5.8□□□□□ -1.48
CHD9-201ENST00000219084 PTMSP20962 102 aa5.8□□□□□ -1.48
CHD9-201ENST00000219084 CASC1Q6TDU7 716 aa5.79□□□□□ -1.48
CHD9-201ENST00000219084 NPM2Q86SE8 214 aaKnown RBP5.79□□□□□ -1.48
CHD9-201ENST00000219084 TNNT2P45379 298 aaPredicted RBP5.79□□□□□ -1.48
CHD9-201ENST00000219084 KAT6BQ8WYB5 2073 aa5.79□□□□□ -1.48
CHD9-201ENST00000219084 FMN1Q68DA7 1419 aa5.78□□□□□ -1.48
CHD9-201ENST00000219084 PPP4R2Q9NY27 417 aa5.78□□□□□ -1.48
CHD9-201ENST00000219084 FAM9BQ8IZU0 186 aa5.78□□□□□ -1.48
CHD9-201ENST00000219084 MIER1Q8N108 512 aa5.78□□□□□ -1.48
CHD9-201ENST00000219084 TRIM44Q96DX7 344 aaPredicted RBP5.78□□□□□ -1.48
CHD9-201ENST00000219084 NCLP19338 710 aaKnown RBP5.77□□□□□ -1.49
CHD9-201ENST00000219084 CFAP65Q6ZU64 1925 aaKnown RBP5.77□□□□□ -1.49
CHD9-201ENST00000219084 PNNQ9H307 717 aaKnown RBP5.77□□□□□ -1.49
CHD9-201ENST00000219084 SETD5Q9C0A6 1442 aa5.77□□□□□ -1.49
CHD9-201ENST00000219084 KIF21BO75037 1637 aa5.77□□□□□ -1.49
CHD9-201ENST00000219084 ESF1Q9H501 851 aaKnown RBP5.76□□□□□ -1.49
CHD9-201ENST00000219084 ZNF777Q9ULD5 760 aaPredicted RBP5.76□□□□□ -1.49
CHD9-201ENST00000219084 CFAP53Q96M91 514 aa5.76□□□□□ -1.49
CHD9-201ENST00000219084 CUX1P39880 1505 aa5.76□□□□□ -1.49
CHD9-201ENST00000219084 FBLN2P98095 1184 aa5.76□□□□□ -1.49
CHD9-201ENST00000219084 ARXQ96QS3 562 aa5.75□□□□□ -1.49
CHD9-201ENST00000219084 PHLDB1Q86UU1 1377 aa5.75□□□□□ -1.49
CHD9-201ENST00000219084 P3H3Q8IVL6 736 aa5.75□□□□□ -1.49
CHD9-201ENST00000219084 ROCK2O75116 1388 aaKnown RBP5.75□□□□□ -1.49
CHD9-201ENST00000219084 ABCC8Q09428 1581 aa5.75□□□□□ -1.49
CHD9-201ENST00000219084 L1TD1Q5T7N2 865 aaKnown RBP5.74□□□□□ -1.49
CHD9-201ENST00000219084 CCDC88BA6NC98 1476 aa5.74□□□□□ -1.49
CHD9-201ENST00000219084 NPM1P06748 294 aaKnown RBP eCLIP5.74□□□□□ -1.49
CHD9-201ENST00000219084 NOP58Q9Y2X3 529 aaKnown RBP5.73□□□□□ -1.49
CHD9-201ENST00000219084 KNSTRNQ9Y448 316 aa5.73□□□□□ -1.49
CHD9-201ENST00000219084 GOLGA6L6A8MZA4 724 aa5.73□□□□□ -1.49
CHD9-201ENST00000219084 MROH2BQ7Z745 1585 aa5.73□□□□□ -1.49
CHD9-201ENST00000219084 KANK1Q14678 1352 aa5.72□□□□□ -1.49
CHD9-201ENST00000219084 HAP1P54257 671 aaPredicted RBP5.72□□□□□ -1.49
CHD9-201ENST00000219084 NBR1Q14596 966 aa5.72□□□□□ -1.49
CHD9-201ENST00000219084 EIF3AQ14152 1382 aaKnown RBP5.72□□□□□ -1.49
CHD9-201ENST00000219084 STAG3Q9UJ98 1225 aa5.72□□□□□ -1.49
CHD9-201ENST00000219084 CCDC18Q5T9S5 1454 aa5.71□□□□□ -1.49
CHD9-201ENST00000219084 ERICH3Q5RHP9 1530 aa5.71□□□□□ -1.49
CHD9-201ENST00000219084 PLEKHD1A6NEE1 506 aa5.71□□□□□ -1.5
CHD9-201ENST00000219084 NRDCO43847 1150 aa5.7□□□□□ -1.5
CHD9-201ENST00000219084 FTSJ3Q8IY81 847 aaKnown RBP5.7□□□□□ -1.5
CHD9-201ENST00000219084 CHMP7Q8WUX9 453 aaPredicted RBP5.7□□□□□ -1.5
CHD9-201ENST00000219084 SUPT16HQ9Y5B9 1047 aaKnown RBP5.7□□□□□ -1.5
CHD9-201ENST00000219084 CUX2O14529 1486 aa5.69□□□□□ -1.5
CHD9-201ENST00000219084 ZRSR1Q15695 479 aaKnown RBP5.69□□□□□ -1.5
CHD9-201ENST00000219084 CARMIL1Q5VZK9 1371 aa5.69□□□□□ -1.5
CHD9-201ENST00000219084 RALBP1Q15311 655 aa5.69□□□□□ -1.5
CHD9-201ENST00000219084 EIF4G1Q04637 1599 aaKnown RBP5.69□□□□□ -1.5
CHD9-201ENST00000219084 NUDCQ9Y266 331 aa5.69□□□□□ -1.5
CHD9-201ENST00000219084 KTN1Q86UP2 1357 aaKnown RBP5.68□□□□□ -1.5
CHD9-201ENST00000219084 CDK11BP21127 795 aaKnown RBP5.68□□□□□ -1.5
CHD9-201ENST00000219084 CARMIL2Q6F5E8 1435 aa5.68□□□□□ -1.5
CHD9-201ENST00000219084 CHAF1AQ13111 956 aaPredicted RBP5.68□□□□□ -1.5
CHD9-201ENST00000219084 USP35Q9P2H5 1018 aa5.68□□□□□ -1.5
CHD9-201ENST00000219084 CFDP1Q9UEE9 299 aaPredicted RBP5.68□□□□□ -1.5
CHD9-201ENST00000219084 RAPGEF2Q9Y4G8 1499 aa5.68□□□□□ -1.5
CHD9-201ENST00000219084 CHMP4AQ9BY43 222 aa5.67□□□□□ -1.5
CHD9-201ENST00000219084 SUPT6HQ7KZ85 1726 aaKnown RBP5.67□□□□□ -1.5
CHD9-201ENST00000219084 CARD11Q9BXL7 1154 aa5.67□□□□□ -1.5
CHD9-201ENST00000219084 CALD1Q05682 793 aaKnown RBP5.67□□□□□ -1.5
CHD9-201ENST00000219084 CHIC2Q9UKJ5 165 aa5.67□□□□□ -1.5
CHD9-201ENST00000219084 PDS5BQ9NTI5 1447 aa5.67□□□□□ -1.5
CHD9-201ENST00000219084 TMF1P82094 1093 aa5.66□□□□□ -1.5
CHD9-201ENST00000219084 TCERG1O14776 1098 aaKnown RBP5.66□□□□□ -1.5
CHD9-201ENST00000219084 CECR2Q9BXF3 1484 aa5.66□□□□□ -1.5
CHD9-201ENST00000219084 MAPK8IP3Q9UPT6 1336 aa5.66□□□□□ -1.5
CHD9-201ENST00000219084 PDE3BQ13370 1112 aa5.66□□□□□ -1.5
CHD9-201ENST00000219084 EFCAB5A4FU69 1503 aa5.66□□□□□ -1.5
CHD9-201ENST00000219084 PRDM2Q13029 1718 aa5.66□□□□□ -1.5
CHD9-201ENST00000219084 MCCP23508 829 aa5.66□□□□□ -1.5
CHD9-201ENST00000219084 HSCBQ8IWL3 235 aa5.66□□□□□ -1.5
CHD9-201ENST00000219084 ERCC6Q03468 1493 aa5.66□□□□□ -1.5
CHD9-201ENST00000219084 PTMAP06454 111 aaKnown RBP5.65□□□□□ -1.5
CHD9-201ENST00000219084 UACAQ9BZF9 1416 aa5.65□□□□□ -1.5
CHD9-201ENST00000219084 ARID3AQ99856 593 aa5.65□□□□□ -1.5
CHD9-201ENST00000219084 SOGA1O94964 1423 aa5.65□□□□□ -1.51
CHD9-201ENST00000219084 RRP7BPQ9NSQ0 103 aa5.65□□□□□ -1.51
CHD9-201ENST00000219084 ANKRD30AQ9BXX3 1397 aa5.64□□□□□ -1.51
CHD9-201ENST00000219084 RSPH4AQ5TD94 716 aa5.64□□□□□ -1.51
CHD9-201ENST00000219084 GBP4Q96PP9 640 aa5.64□□□□□ -1.51
CHD9-201ENST00000219084 GRWD1Q9BQ67 446 aaKnown RBP eCLIP5.64□□□□□ -1.511e-7■■■■□ 23.5
CHD9-201ENST00000219084 RAB3GAP2Q9H2M9 1393 aa5.64□□□□□ -1.51
CHD9-201ENST00000219084 NGEFQ8N5V2 710 aa5.64□□□□□ -1.51
CHD9-201ENST00000219084 SYAP1Q96A49 352 aaPredicted RBP5.63□□□□□ -1.51
CHD9-201ENST00000219084 IPO8O15397 1037 aaKnown RBP5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms