RNA–Protein interactions for RNA: ENST00000216639.7

VRK1-201, Transcript of vaccinia related kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VRK1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-201ENST00000216639 AQRO60306 1485 aaKnown RBP eCLIP26.67■■□□□ 1.867e-7■■□□□ 11.4
VRK1-201ENST00000216639 GRIN2BQ13224 1484 aa26.66■■□□□ 1.86
VRK1-201ENST00000216639 FHAD1B1AJZ9 1412 aa26.64■■□□□ 1.86
VRK1-201ENST00000216639 ADAMTS12P58397 1594 aa26.6■■□□□ 1.85
VRK1-201ENST00000216639 ZEB1P37275 1124 aaPredicted RBP26.59■■□□□ 1.85
VRK1-201ENST00000216639 ZNF608Q9ULD9 1512 aaPredicted RBP26.57■■□□□ 1.84
VRK1-201ENST00000216639 MAP3K1Q13233 1512 aa26.52■■□□□ 1.84
VRK1-201ENST00000216639 EIF4G3O43432 1585 aaKnown RBP26.51■■□□□ 1.83
VRK1-201ENST00000216639 FHOD3Q2V2M9 1422 aa26.49■■□□□ 1.83
VRK1-201ENST00000216639 P3H3Q8IVL6 736 aa26.48■■□□□ 1.83
VRK1-201ENST00000216639 SAMD9Q5K651 1589 aa26.46■■□□□ 1.83
VRK1-201ENST00000216639 KANK4Q5T7N3 995 aaPredicted RBP26.46■■□□□ 1.83
VRK1-201ENST00000216639 FMN1Q68DA7 1419 aa26.45■■□□□ 1.83
VRK1-201ENST00000216639 TIAM1Q13009 1591 aa26.45■■□□□ 1.82
VRK1-201ENST00000216639 SNAPC4Q5SXM2 1469 aa26.43■■□□□ 1.82
VRK1-201ENST00000216639 PCF11O94913 1555 aaKnown RBP26.43■■□□□ 1.82
VRK1-201ENST00000216639 FYCO1Q9BQS8 1478 aa26.42■■□□□ 1.82
VRK1-201ENST00000216639 IQGAP2Q13576 1575 aa26.4■■□□□ 1.82
VRK1-201ENST00000216639 CASKIN1Q8WXD9 1431 aa26.4■■□□□ 1.82
VRK1-201ENST00000216639 MAGI1Q96QZ7 1491 aaPredicted RBP26.4■■□□□ 1.82
VRK1-201ENST00000216639 CFAP43Q8NDM7 1665 aa26.36■■□□□ 1.81
VRK1-201ENST00000216639 GRIN2AQ12879 1464 aa26.33■■□□□ 1.81
VRK1-201ENST00000216639 LRRC9Q6ZRR7 1453 aa26.32■■□□□ 1.8
VRK1-201ENST00000216639 CCER1Q8TC90 406 aaPredicted RBP26.32■■□□□ 1.8
VRK1-201ENST00000216639 ATP1B4Q9UN42 357 aaPredicted RBP26.31■■□□□ 1.8
VRK1-201ENST00000216639 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.31■■□□□ 1.8
VRK1-201ENST00000216639 SYNJ2O15056 1496 aa26.3■■□□□ 1.8
VRK1-201ENST00000216639 KIAA0586Q9BVV6 1533 aa26.29■■□□□ 1.8
VRK1-201ENST00000216639 RRBP1Q9P2E9 1410 aaKnown RBP26.29■■□□□ 1.8
VRK1-201ENST00000216639 HNRNPUL2Q1KMD3 747 aaKnown RBP26.28■■□□□ 1.8
VRK1-201ENST00000216639 UGGT2Q9NYU1 1516 aa26.26■■□□□ 1.79
VRK1-201ENST00000216639 CHMP7Q8WUX9 453 aaPredicted RBP26.25■■□□□ 1.79
VRK1-201ENST00000216639 CCNB3Q8WWL7 1395 aa26.21■■□□□ 1.79
VRK1-201ENST00000216639 FBLN2P98095 1184 aa26.14■■□□□ 1.77
VRK1-201ENST00000216639 CEP170Q5SW79 1584 aa26.12■■□□□ 1.77
VRK1-201ENST00000216639 HECW1Q76N89 1606 aa26.12■■□□□ 1.77
VRK1-201ENST00000216639 CCDC18Q5T9S5 1454 aa26.12■■□□□ 1.77
VRK1-201ENST00000216639 KIAA0556O60303 1618 aa26.11■■□□□ 1.77
VRK1-201ENST00000216639 NUP160Q12769 1436 aa26.11■■□□□ 1.77
VRK1-201ENST00000216639 MTUS2Q5JR59 1369 aa26.09■■□□□ 1.77
VRK1-201ENST00000216639 PHLDB1Q86UU1 1377 aa26.09■■□□□ 1.77
VRK1-201ENST00000216639 DISP1Q96F81 1524 aa26.08■■□□□ 1.77
VRK1-201ENST00000216639 LRRIQ1Q96JM4 1722 aa26.07■■□□□ 1.76
VRK1-201ENST00000216639 EHBP1L1Q8N3D4 1523 aa26.03■■□□□ 1.76
VRK1-201ENST00000216639 CARMIL2Q6F5E8 1435 aa26■■□□□ 1.75
VRK1-201ENST00000216639 EPRSP07814 1512 aaKnown RBP25.99■■□□□ 1.75
VRK1-201ENST00000216639 SUPT6HQ7KZ85 1726 aaKnown RBP25.97■■□□□ 1.75
VRK1-201ENST00000216639 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.96■■□□□ 1.75
VRK1-201ENST00000216639 JPH4Q96JJ6 628 aa25.96■■□□□ 1.75
VRK1-201ENST00000216639 FAM50AQ14320 339 aaKnown RBP25.94■■□□□ 1.74
VRK1-201ENST00000216639 NCOA2Q15596 1464 aa25.93■■□□□ 1.74
VRK1-201ENST00000216639 ITGAEP38570 1179 aa25.92■■□□□ 1.74
VRK1-201ENST00000216639 RAPGEF6Q8TEU7 1601 aa25.92■■□□□ 1.74
VRK1-201ENST00000216639 FGD6Q6ZV73 1430 aa25.9■■□□□ 1.74
VRK1-201ENST00000216639 MYOM3Q5VTT5 1437 aa25.87■■□□□ 1.73
VRK1-201ENST00000216639 CHD1O14646 1710 aa25.87■■□□□ 1.73
VRK1-201ENST00000216639 CDK13Q14004 1512 aaKnown RBP25.87■■□□□ 1.73
VRK1-201ENST00000216639 MAGI3Q5TCQ9 1506 aa25.87■■□□□ 1.73
VRK1-201ENST00000216639 ARHGEF11O15085 1522 aa25.85■■□□□ 1.73
VRK1-201ENST00000216639 NUP153P49790 1475 aaKnown RBP25.84■■□□□ 1.73
VRK1-201ENST00000216639 CLSPNQ9HAW4 1339 aa25.83■■□□□ 1.73
VRK1-201ENST00000216639 CDK11AQ9UQ88 783 aaPredicted RBP25.82■■□□□ 1.72
VRK1-201ENST00000216639 DHX57Q6P158 1386 aaKnown RBP25.78■■□□□ 1.72
VRK1-201ENST00000216639 SETD5Q9C0A6 1442 aa25.78■■□□□ 1.72
VRK1-201ENST00000216639 ARID3CA6NKF2 412 aa25.76■■□□□ 1.71
VRK1-201ENST00000216639 PLB1Q6P1J6 1458 aa25.75■■□□□ 1.71
VRK1-201ENST00000216639 PRG4Q92954 1404 aaPredicted RBP25.75■■□□□ 1.71
VRK1-201ENST00000216639 RAB3GAP2Q9H2M9 1393 aa25.75■■□□□ 1.71
VRK1-201ENST00000216639 PTPN23Q9H3S7 1636 aa25.73■■□□□ 1.71
VRK1-201ENST00000216639 MIA2Q96PC5 1412 aa25.71■■□□□ 1.71
VRK1-201ENST00000216639 ABCA8O94911 1581 aa25.7■■□□□ 1.7
VRK1-201ENST00000216639 SHROOM2Q13796 1616 aa25.69■■□□□ 1.7
VRK1-201ENST00000216639 TCOF1Q13428 1488 aaKnown RBP25.69■■□□□ 1.7
VRK1-201ENST00000216639 PTPRGP23470 1445 aa25.66■■□□□ 1.7
VRK1-201ENST00000216639 TROQ12816 1431 aaPredicted RBP25.66■■□□□ 1.7
VRK1-201ENST00000216639 ADCY10Q96PN6 1610 aa25.58■■□□□ 1.69
VRK1-201ENST00000216639 HFM1A2PYH4 1435 aa25.58■■□□□ 1.69
VRK1-201ENST00000216639 PTPRKQ15262 1439 aa25.57■■□□□ 1.68
VRK1-201ENST00000216639 PLEKHD1A6NEE1 506 aa25.56■■□□□ 1.68
VRK1-201ENST00000216639 CLASP1Q7Z460 1538 aa25.56■■□□□ 1.68
VRK1-201ENST00000216639 ATP10BO94823 1461 aa25.55■■□□□ 1.68
VRK1-201ENST00000216639 ITSN2Q9NZM3 1697 aa25.53■■□□□ 1.68
VRK1-201ENST00000216639 UACAQ9BZF9 1416 aa25.51■■□□□ 1.67
VRK1-201ENST00000216639 AKNAQ7Z591 1439 aa25.49■■□□□ 1.67
VRK1-201ENST00000216639 KIF14Q15058 1648 aa25.48■■□□□ 1.67
VRK1-201ENST00000216639 NAIPQ13075 1403 aa25.48■■□□□ 1.67
VRK1-201ENST00000216639 MAPKBP1O60336 1514 aa25.47■■□□□ 1.67
VRK1-201ENST00000216639 GPATCH8Q9UKJ3 1502 aaKnown RBP25.44■■□□□ 1.66
VRK1-201ENST00000216639 CFDP1Q9UEE9 299 aaPredicted RBP25.44■■□□□ 1.66
VRK1-201ENST00000216639 ERCC6L2Q5T890 1561 aa25.44■■□□□ 1.66
VRK1-201ENST00000216639 DNMT1P26358 1616 aaKnown RBP25.43■■□□□ 1.66
VRK1-201ENST00000216639 GCC2Q8IWJ2 1684 aa25.42■■□□□ 1.66
VRK1-201ENST00000216639 DAPK1P53355 1430 aa25.41■■□□□ 1.66
VRK1-201ENST00000216639 ABCC2Q92887 1545 aa25.41■■□□□ 1.66
VRK1-201ENST00000216639 ZNF316A6NFI3 1004 aaPredicted RBP25.4■■□□□ 1.66
VRK1-201ENST00000216639 CHIC2Q9UKJ5 165 aa25.4■■□□□ 1.66
VRK1-201ENST00000216639 CAMSAP2Q08AD1 1489 aa25.38■■□□□ 1.65
VRK1-201ENST00000216639 ROCK1Q13464 1354 aa25.38■■□□□ 1.65
VRK1-201ENST00000216639 ABCC10Q5T3U5 1492 aa25.38■■□□□ 1.65
VRK1-201ENST00000216639 ACIN1Q9UKV3 1341 aaKnown RBP25.38■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms