RNA–Protein interactions for RNA: ENST00000054666.10

VAMP3-201, Transcript of vesicle associated membrane protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAMP3, Length 2,205 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-201ENST00000054666 MRC2Q9UBG0 1479 aa12.4□□□□□ -0.42
VAMP3-201ENST00000054666 TDRD9Q8NDG6 1382 aaKnown RBP12.4□□□□□ -0.42
VAMP3-201ENST00000054666 KANK4Q5T7N3 995 aaPredicted RBP12.4□□□□□ -0.42
VAMP3-201ENST00000054666 RRBP1Q9P2E9 1410 aaKnown RBP12.39□□□□□ -0.43
VAMP3-201ENST00000054666 TARBP1Q13395 1621 aaKnown RBP12.39□□□□□ -0.43
VAMP3-201ENST00000054666 PCF11O94913 1555 aaKnown RBP12.39□□□□□ -0.43
VAMP3-201ENST00000054666 CFAP43Q8NDM7 1665 aa12.38□□□□□ -0.43
VAMP3-201ENST00000054666 FYCO1Q9BQS8 1478 aa12.36□□□□□ -0.43
VAMP3-201ENST00000054666 PBRM1Q86U86 1689 aa12.36□□□□□ -0.43
VAMP3-201ENST00000054666 FHOD3Q2V2M9 1422 aa12.36□□□□□ -0.43
VAMP3-201ENST00000054666 CCNB3Q8WWL7 1395 aa12.35□□□□□ -0.43
VAMP3-201ENST00000054666 AQRO60306 1485 aaKnown RBP eCLIP12.34□□□□□ -0.438e-8■■■■■ 33.7
VAMP3-201ENST00000054666 LRRC9Q6ZRR7 1453 aa12.34□□□□□ -0.43
VAMP3-201ENST00000054666 FMN1Q68DA7 1419 aa12.34□□□□□ -0.43
VAMP3-201ENST00000054666 P3H3Q8IVL6 736 aa12.33□□□□□ -0.44
VAMP3-201ENST00000054666 CASKIN1Q8WXD9 1431 aa12.32□□□□□ -0.44
VAMP3-201ENST00000054666 WDR62O43379 1518 aa12.31□□□□□ -0.44
VAMP3-201ENST00000054666 SAMD9Q5K651 1589 aa12.31□□□□□ -0.44
VAMP3-201ENST00000054666 ADAMTS12P58397 1594 aa12.3□□□□□ -0.44
VAMP3-201ENST00000054666 IFT140Q96RY7 1462 aa12.3□□□□□ -0.44
VAMP3-201ENST00000054666 ATP1B4Q9UN42 357 aaPredicted RBP12.29□□□□□ -0.44
VAMP3-201ENST00000054666 GRIN2BQ13224 1484 aa12.28□□□□□ -0.44
VAMP3-201ENST00000054666 ERCC6Q03468 1493 aa12.27□□□□□ -0.45
VAMP3-201ENST00000054666 CLSPNQ9HAW4 1339 aa12.26□□□□□ -0.45
VAMP3-201ENST00000054666 THOC2Q8NI27 1593 aaKnown RBP12.26□□□□□ -0.45
VAMP3-201ENST00000054666 SNAPC4Q5SXM2 1469 aa12.26□□□□□ -0.45
VAMP3-201ENST00000054666 IQGAP2Q13576 1575 aa12.25□□□□□ -0.45
VAMP3-201ENST00000054666 PHLDB1Q86UU1 1377 aa12.24□□□□□ -0.45
VAMP3-201ENST00000054666 DHX57Q6P158 1386 aaKnown RBP12.23□□□□□ -0.45
VAMP3-201ENST00000054666 ITGAEP38570 1179 aa12.21□□□□□ -0.45
VAMP3-201ENST00000054666 MTUS2Q5JR59 1369 aa12.21□□□□□ -0.45
VAMP3-201ENST00000054666 ZNF608Q9ULD9 1512 aaPredicted RBP12.21□□□□□ -0.46
VAMP3-201ENST00000054666 EIF4G3O43432 1585 aaKnown RBP12.2□□□□□ -0.46
VAMP3-201ENST00000054666 CCDC18Q5T9S5 1454 aa12.19□□□□□ -0.46
VAMP3-201ENST00000054666 HECW1Q76N89 1606 aa12.19□□□□□ -0.46
VAMP3-201ENST00000054666 FAM50AQ14320 339 aaKnown RBP12.19□□□□□ -0.46
VAMP3-201ENST00000054666 EHBP1L1Q8N3D4 1523 aa12.18□□□□□ -0.46
VAMP3-201ENST00000054666 ZNF316A6NFI3 1004 aaPredicted RBP12.18□□□□□ -0.46
VAMP3-201ENST00000054666 DIEXFQ68CQ4 756 aaKnown RBP12.18□□□□□ -0.46
VAMP3-201ENST00000054666 LRRIQ1Q96JM4 1722 aa12.17□□□□□ -0.46
VAMP3-201ENST00000054666 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.17□□□□□ -0.46
VAMP3-201ENST00000054666 SUPT6HQ7KZ85 1726 aaKnown RBP12.16□□□□□ -0.46
VAMP3-201ENST00000054666 UGGT2Q9NYU1 1516 aa12.16□□□□□ -0.46
VAMP3-201ENST00000054666 RAB3GAP2Q9H2M9 1393 aa12.16□□□□□ -0.46
VAMP3-201ENST00000054666 SETD5Q9C0A6 1442 aa12.15□□□□□ -0.46
VAMP3-201ENST00000054666 FGD6Q6ZV73 1430 aa12.15□□□□□ -0.47
VAMP3-201ENST00000054666 MAGI1Q96QZ7 1491 aaPredicted RBP12.15□□□□□ -0.47
VAMP3-201ENST00000054666 GRIN2AQ12879 1464 aa12.14□□□□□ -0.47
VAMP3-201ENST00000054666 KIAA0586Q9BVV6 1533 aa12.14□□□□□ -0.47
VAMP3-201ENST00000054666 NCOA2Q15596 1464 aa12.13□□□□□ -0.47
VAMP3-201ENST00000054666 KIAA0556O60303 1618 aa12.11□□□□□ -0.47
VAMP3-201ENST00000054666 MYOM3Q5VTT5 1437 aa12.11□□□□□ -0.47
VAMP3-201ENST00000054666 SYNJ2O15056 1496 aa12.1□□□□□ -0.47
VAMP3-201ENST00000054666 EPRSP07814 1512 aaKnown RBP12.09□□□□□ -0.47
VAMP3-201ENST00000054666 ARHGEF11O15085 1522 aa12.07□□□□□ -0.48
VAMP3-201ENST00000054666 MAPKBP1O60336 1514 aa12.07□□□□□ -0.48
VAMP3-201ENST00000054666 MAGI3Q5TCQ9 1506 aa12.06□□□□□ -0.48
VAMP3-201ENST00000054666 DISP1Q96F81 1524 aa12.06□□□□□ -0.48
VAMP3-201ENST00000054666 PTPN23Q9H3S7 1636 aa12.06□□□□□ -0.48
VAMP3-201ENST00000054666 CHMP7Q8WUX9 453 aaPredicted RBP12.06□□□□□ -0.48
VAMP3-201ENST00000054666 CDK13Q14004 1512 aaKnown RBP12.05□□□□□ -0.48
VAMP3-201ENST00000054666 CEP170Q5SW79 1584 aa12.05□□□□□ -0.48
VAMP3-201ENST00000054666 RAPGEF6Q8TEU7 1601 aa12.04□□□□□ -0.48
VAMP3-201ENST00000054666 HFM1A2PYH4 1435 aa12.03□□□□□ -0.48
VAMP3-201ENST00000054666 TCOF1Q13428 1488 aaKnown RBP12.02□□□□□ -0.49
VAMP3-201ENST00000054666 NUP160Q12769 1436 aa12.01□□□□□ -0.49
VAMP3-201ENST00000054666 FBLN2P98095 1184 aa12.01□□□□□ -0.49
VAMP3-201ENST00000054666 CARMIL2Q6F5E8 1435 aa12.01□□□□□ -0.49
VAMP3-201ENST00000054666 MIA2Q96PC5 1412 aa12□□□□□ -0.49
VAMP3-201ENST00000054666 NUP153P49790 1475 aaKnown RBP12□□□□□ -0.49
VAMP3-201ENST00000054666 CDK11AQ9UQ88 783 aaPredicted RBP11.99□□□□□ -0.49
VAMP3-201ENST00000054666 PTPRKQ15262 1439 aa11.98□□□□□ -0.49
VAMP3-201ENST00000054666 ARID3CA6NKF2 412 aa11.98□□□□□ -0.49
VAMP3-201ENST00000054666 UACAQ9BZF9 1416 aa11.97□□□□□ -0.49
VAMP3-201ENST00000054666 CENPBP07199 599 aaPredicted RBP11.96□□□□□ -0.49
VAMP3-201ENST00000054666 GCC2Q8IWJ2 1684 aa11.96□□□□□ -0.49
VAMP3-201ENST00000054666 NAIPQ13075 1403 aa11.96□□□□□ -0.49
VAMP3-201ENST00000054666 AKNAQ7Z591 1439 aa11.96□□□□□ -0.49
VAMP3-201ENST00000054666 TIMELESSQ9UNS1 1208 aa11.94□□□□□ -0.5
VAMP3-201ENST00000054666 JPH4Q96JJ6 628 aa11.94□□□□□ -0.5
VAMP3-201ENST00000054666 TROQ12816 1431 aaPredicted RBP11.93□□□□□ -0.5
VAMP3-201ENST00000054666 PLB1Q6P1J6 1458 aa11.93□□□□□ -0.5
VAMP3-201ENST00000054666 ITSN2Q9NZM3 1697 aa11.93□□□□□ -0.5
VAMP3-201ENST00000054666 NEUROD1Q13562 356 aa11.92□□□□□ -0.5
VAMP3-201ENST00000054666 ADCY10Q96PN6 1610 aa11.91□□□□□ -0.5
VAMP3-201ENST00000054666 SIN3AQ96ST3 1273 aa11.9□□□□□ -0.5
VAMP3-201ENST00000054666 DNMT1P26358 1616 aaKnown RBP11.9□□□□□ -0.5
VAMP3-201ENST00000054666 MIER1Q8N108 512 aa11.89□□□□□ -0.51
VAMP3-201ENST00000054666 DAPK1P53355 1430 aa11.89□□□□□ -0.51
VAMP3-201ENST00000054666 TONSLQ96HA7 1378 aa11.89□□□□□ -0.51
VAMP3-201ENST00000054666 ABCA8O94911 1581 aa11.88□□□□□ -0.51
VAMP3-201ENST00000054666 RRP7BPQ9NSQ0 103 aa11.88□□□□□ -0.51
VAMP3-201ENST00000054666 CHIC2Q9UKJ5 165 aa11.88□□□□□ -0.51
VAMP3-201ENST00000054666 ACIN1Q9UKV3 1341 aaKnown RBP11.88□□□□□ -0.51
VAMP3-201ENST00000054666 PRG4Q92954 1404 aaPredicted RBP11.88□□□□□ -0.51
VAMP3-201ENST00000054666 CHD1O14646 1710 aa11.87□□□□□ -0.51
VAMP3-201ENST00000054666 ROCK1Q13464 1354 aa11.87□□□□□ -0.51
VAMP3-201ENST00000054666 KIF14Q15058 1648 aa11.87□□□□□ -0.51
VAMP3-201ENST00000054666 CAMSAP2Q08AD1 1489 aa11.85□□□□□ -0.51
VAMP3-201ENST00000054666 ABCC5O15440 1437 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms