RNA–Protein interactions for RNA: ENST00000003912.7

NIPAL3-201, Transcript of NIPA like domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene NIPAL3, Length 5,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3-201ENST00000003912 EIF4G1Q04637 1599 aaKnown RBP14.18□□□□□ -0.14
NIPAL3-201ENST00000003912 KDM2AQ9Y2K7 1162 aa14.17□□□□□ -0.14
NIPAL3-201ENST00000003912 SOGA1O94964 1423 aa14.15□□□□□ -0.14
NIPAL3-201ENST00000003912 TRHP20396 242 aaPredicted RBP14.15□□□□□ -0.14
NIPAL3-201ENST00000003912 CADPSQ9ULU8 1353 aa14.14□□□□□ -0.15
NIPAL3-201ENST00000003912 FHAD1B1AJZ9 1412 aa14.14□□□□□ -0.15
NIPAL3-201ENST00000003912 CARMIL2Q6F5E8 1435 aa14.12□□□□□ -0.15
NIPAL3-201ENST00000003912 TOP2AP11388 1531 aaKnown RBP14.1□□□□□ -0.15
NIPAL3-201ENST00000003912 CCNB3Q8WWL7 1395 aa14.09□□□□□ -0.15
NIPAL3-201ENST00000003912 C14orf37Q86TY3 774 aa14.09□□□□□ -0.15
NIPAL3-201ENST00000003912 ATAD2BQ9ULI0 1458 aa14.08□□□□□ -0.15
NIPAL3-201ENST00000003912 TDRD9Q8NDG6 1382 aaKnown RBP14.08□□□□□ -0.16
NIPAL3-201ENST00000003912 SCAF1Q9H7N4 1312 aaKnown RBP14.07□□□□□ -0.16
NIPAL3-201ENST00000003912 RGL3Q3MIN7 710 aa14.02□□□□□ -0.16
NIPAL3-201ENST00000003912 WIZO95785 1651 aa14.01□□□□□ -0.17
NIPAL3-201ENST00000003912 DDX10Q13206 875 aaKnown RBP14.01□□□□□ -0.17
NIPAL3-201ENST00000003912 BCL11AQ9H165 835 aa14.01□□□□□ -0.17
NIPAL3-201ENST00000003912 EIF4G2P78344 907 aaKnown RBP eCLIP14□□□□□ -0.17
NIPAL3-201ENST00000003912 SENP3Q9H4L4 574 aaPredicted RBP14□□□□□ -0.17
NIPAL3-201ENST00000003912 SMARCA4P51532 1647 aa14□□□□□ -0.17
NIPAL3-201ENST00000003912 TMC1Q8TDI8 760 aa13.99□□□□□ -0.17
NIPAL3-201ENST00000003912 ABCC8Q09428 1581 aa13.99□□□□□ -0.17
NIPAL3-201ENST00000003912 KANK1Q14678 1352 aa13.98□□□□□ -0.17
NIPAL3-201ENST00000003912 WDR43Q15061 677 aaKnown RBP eCLIP13.98□□□□□ -0.17
NIPAL3-201ENST00000003912 CDCA8Q53HL2 280 aa13.96□□□□□ -0.17
NIPAL3-201ENST00000003912 FAM9BQ8IZU0 186 aa13.94□□□□□ -0.18
NIPAL3-201ENST00000003912 FANCD2Q9BXW9 1451 aa13.94□□□□□ -0.18
NIPAL3-201ENST00000003912 HDGFP51858 240 aaKnown RBP13.94□□□□□ -0.18
NIPAL3-201ENST00000003912 HAP1P54257 671 aaPredicted RBP13.94□□□□□ -0.18
NIPAL3-201ENST00000003912 FMN1Q68DA7 1419 aa13.93□□□□□ -0.18
NIPAL3-201ENST00000003912 ZBTB7CA1YPR0 619 aa13.93□□□□□ -0.18
NIPAL3-201ENST00000003912 MLECQ14165 292 aa13.92□□□□□ -0.18
NIPAL3-201ENST00000003912 EFCAB2Q5VUJ9 269 aa13.91□□□□□ -0.18
NIPAL3-201ENST00000003912 HNRNPUQ00839 825 aaKnown RBP eCLIP13.91□□□□□ -0.18
NIPAL3-201ENST00000003912 RTL5Q5HYW3 569 aaPredicted RBP13.9□□□□□ -0.18
NIPAL3-201ENST00000003912 POGKQ9P215 609 aa13.89□□□□□ -0.19
NIPAL3-201ENST00000003912 A0A0G2JS52 829 aa13.89□□□□□ -0.19
NIPAL3-201ENST00000003912 PLEKHG5O94827 1062 aa13.89□□□□□ -0.19
NIPAL3-201ENST00000003912 NPM2Q86SE8 214 aaKnown RBP13.89□□□□□ -0.19
NIPAL3-201ENST00000003912 RAPGEF2Q9Y4G8 1499 aa13.89□□□□□ -0.19
NIPAL3-201ENST00000003912 CARD11Q9BXL7 1154 aa13.88□□□□□ -0.19
NIPAL3-201ENST00000003912 MRS2Q9HD23 443 aa13.87□□□□□ -0.19
NIPAL3-201ENST00000003912 JPH4Q96JJ6 628 aa13.87□□□□□ -0.19
NIPAL3-201ENST00000003912 SALL2Q9Y467 1007 aaPredicted RBP13.87□□□□□ -0.19
NIPAL3-201ENST00000003912 ARHGAP35Q9NRY4 1499 aa13.87□□□□□ -0.19
NIPAL3-201ENST00000003912 VPS8Q8N3P4 1428 aa13.86□□□□□ -0.19
NIPAL3-201ENST00000003912 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.85□□□□□ -0.19
NIPAL3-201ENST00000003912 GGT6Q6P531 493 aa13.85□□□□□ -0.19
NIPAL3-201ENST00000003912 CFAP53Q96M91 514 aa13.84□□□□□ -0.19
NIPAL3-201ENST00000003912 OSCARQ8IYS5 282 aa13.84□□□□□ -0.19
NIPAL3-201ENST00000003912 GTF3C3Q9Y5Q9 886 aa13.84□□□□□ -0.19
NIPAL3-201ENST00000003912 KNSTRNQ9Y448 316 aa13.83□□□□□ -0.2
NIPAL3-201ENST00000003912 HIRIP3Q9BW71 556 aaPredicted RBP13.83□□□□□ -0.2
NIPAL3-201ENST00000003912 NCAPD3P42695 1498 aa13.81□□□□□ -0.2
NIPAL3-201ENST00000003912 LMOD2Q6P5Q4 547 aa13.79□□□□□ -0.2
NIPAL3-201ENST00000003912 RSPH4AQ5TD94 716 aa13.77□□□□□ -0.2
NIPAL3-201ENST00000003912 ANKRD30AQ9BXX3 1397 aa13.76□□□□□ -0.21
NIPAL3-201ENST00000003912 DCAF11Q8TEB1 546 aa13.76□□□□□ -0.21
NIPAL3-201ENST00000003912 PPM1GO15355 546 aaPredicted RBP13.76□□□□□ -0.21
NIPAL3-201ENST00000003912 FHOD3Q2V2M9 1422 aa13.75□□□□□ -0.21
NIPAL3-201ENST00000003912 PTPRGP23470 1445 aa13.75□□□□□ -0.21
NIPAL3-201ENST00000003912 CCDC18Q5T9S5 1454 aa13.75□□□□□ -0.21
NIPAL3-201ENST00000003912 CYB5RLQ6IPT4 315 aa13.74□□□□□ -0.21
NIPAL3-201ENST00000003912 SIN3AQ96ST3 1273 aa13.74□□□□□ -0.21
NIPAL3-201ENST00000003912 KANK4Q5T7N3 995 aaPredicted RBP13.73□□□□□ -0.21
NIPAL3-201ENST00000003912 SETD5Q9C0A6 1442 aa13.73□□□□□ -0.21
NIPAL3-201ENST00000003912 NUDCQ9Y266 331 aa13.73□□□□□ -0.21
NIPAL3-201ENST00000003912 SPAG9O60271 1321 aaKnown RBP13.73□□□□□ -0.21
NIPAL3-201ENST00000003912 PKD2Q13563 968 aa13.72□□□□□ -0.21
NIPAL3-201ENST00000003912 GAPVD1Q14C86 1478 aa13.72□□□□□ -0.21
NIPAL3-201ENST00000003912 MYH16Q9H6N6 1097 aa13.71□□□□□ -0.21
NIPAL3-201ENST00000003912 TMF1P82094 1093 aa13.71□□□□□ -0.21
NIPAL3-201ENST00000003912 UPF2Q9HAU5 1272 aaKnown RBP13.71□□□□□ -0.21
NIPAL3-201ENST00000003912 KIF3BO15066 747 aa13.71□□□□□ -0.21
NIPAL3-201ENST00000003912 FGD5Q6ZNL6 1462 aa13.71□□□□□ -0.22
NIPAL3-201ENST00000003912 TIMELESSQ9UNS1 1208 aa13.7□□□□□ -0.22
NIPAL3-201ENST00000003912 ANP32AP39687 249 aaKnown RBP13.69□□□□□ -0.22
NIPAL3-201ENST00000003912 FKBP8Q14318 412 aa13.69□□□□□ -0.22
NIPAL3-201ENST00000003912 HNRNPMP52272 730 aaKnown RBP eCLIP13.69□□□□□ -0.22
NIPAL3-201ENST00000003912 NUP155O75694 1391 aa13.69□□□□□ -0.22
NIPAL3-201ENST00000003912 SRPK2P78362 688 aaKnown RBP13.68□□□□□ -0.22
NIPAL3-201ENST00000003912 MAPK8IP3Q9UPT6 1336 aa13.68□□□□□ -0.22
NIPAL3-201ENST00000003912 WASHC2CQ9Y4E1 1318 aa13.66□□□□□ -0.22
NIPAL3-201ENST00000003912 CCDC136Q96JN2 1154 aa13.65□□□□□ -0.22
NIPAL3-201ENST00000003912 EID1Q9Y6B2 187 aa13.65□□□□□ -0.22
NIPAL3-201ENST00000003912 RAD54L2Q9Y4B4 1467 aa13.64□□□□□ -0.23
NIPAL3-201ENST00000003912 HSP90AA1P07900 732 aaKnown RBP13.64□□□□□ -0.23
NIPAL3-201ENST00000003912 PNNQ9H307 717 aaKnown RBP13.63□□□□□ -0.23
NIPAL3-201ENST00000003912 STK26Q9P289 416 aa13.63□□□□□ -0.23
NIPAL3-201ENST00000003912 MPHOSPH9Q99550 1183 aa13.63□□□□□ -0.23
NIPAL3-201ENST00000003912 SAFB2Q14151 953 aaKnown RBP eCLIP13.62□□□□□ -0.23
NIPAL3-201ENST00000003912 ARXQ96QS3 562 aa13.62□□□□□ -0.23
NIPAL3-201ENST00000003912 IGF1RP08069 1367 aa13.61□□□□□ -0.23
NIPAL3-201ENST00000003912 TNNT2P45379 298 aaPredicted RBP13.61□□□□□ -0.23
NIPAL3-201ENST00000003912 MIER1Q8N108 512 aa13.61□□□□□ -0.23
NIPAL3-201ENST00000003912 CC2D2AQ9P2K1 1620 aa13.6□□□□□ -0.23
NIPAL3-201ENST00000003912 HDGFL2Q7Z4V5 671 aaPredicted RBP13.6□□□□□ -0.23
NIPAL3-201ENST00000003912 AQRO60306 1485 aaKnown RBP eCLIP13.6□□□□□ -0.233e-6■■■■□ 20.3
NIPAL3-201ENST00000003912 MRC2Q9UBG0 1479 aa13.58□□□□□ -0.23
NIPAL3-201ENST00000003912 CC2D1BQ5T0F9 858 aaKnown RBP13.58□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms