RNA–Protein interactions for RNA: ENSMUST00000193839.5

Pcdha1-202, Transcript of Protocadherin alpha 1, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Pcdha1, Length 4,925 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha1-202ENSMUST00000193839 4933416C03RikQ3V063 378 aa19.13■□□□□ 0.65
Pcdha1-202ENSMUST00000193839 Cux2P70298 1426 aa19.11■□□□□ 0.65
Pcdha1-202ENSMUST00000193839 Erich6D3Z6S9 713 aa19.11■□□□□ 0.65
Pcdha1-202ENSMUST00000193839 Arhgap27A2AB59 869 aa19.09■□□□□ 0.65
Pcdha1-202ENSMUST00000193839 Sall2Q9QX96 1004 aa19.07■□□□□ 0.64
Pcdha1-202ENSMUST00000193839 Iqgap2Q3UQ44 1575 aa19.04■□□□□ 0.64
Pcdha1-202ENSMUST00000193839 Ttbk1Q6PCN3 1308 aa19.02■□□□□ 0.64
Pcdha1-202ENSMUST00000193839 Eif5bQ05D44 1216 aaKnown RBP18.98■□□□□ 0.63
Pcdha1-202ENSMUST00000193839 Csrnp3P59055 597 aa18.94■□□□□ 0.62
Pcdha1-202ENSMUST00000193839 4930567H17RikQ3V0K5 233 aa18.94■□□□□ 0.62
Pcdha1-202ENSMUST00000193839 Atp1b4Q99ME6 356 aa18.93■□□□□ 0.62
Pcdha1-202ENSMUST00000193839 Baz1bQ9Z277 1479 aa18.9■□□□□ 0.62
Pcdha1-202ENSMUST00000193839 Mia2Q91ZV0 1396 aa18.89■□□□□ 0.61
Pcdha1-202ENSMUST00000193839 LrpprcQ6PB66 1392 aaKnown RBP18.89■□□□□ 0.61
Pcdha1-202ENSMUST00000193839 Kif27Q7M6Z4 1394 aa18.89■□□□□ 0.61
Pcdha1-202ENSMUST00000193839 Zbtb4Q5F293 982 aa18.87■□□□□ 0.61
Pcdha1-202ENSMUST00000193839 Carmil1Q6EDY6 1374 aa18.86■□□□□ 0.61
Pcdha1-202ENSMUST00000193839 Mtus2Q3UHD3 1353 aa18.85■□□□□ 0.61
Pcdha1-202ENSMUST00000193839 Aebp1Q640N1 1128 aa18.85■□□□□ 0.61
Pcdha1-202ENSMUST00000193839 Gm13695A2AK44 830 aa18.84■□□□□ 0.61
Pcdha1-202ENSMUST00000193839 CntlnA2AM05 1397 aa18.82■□□□□ 0.6
Pcdha1-202ENSMUST00000193839 Rapgef2Q8CHG7 1496 aa18.81■□□□□ 0.6
Pcdha1-202ENSMUST00000193839 Nlrp6Q91WS2 869 aa18.78■□□□□ 0.6
Pcdha1-202ENSMUST00000193839 Mapk8ip2Q9ERE9 830 aa18.78■□□□□ 0.6
Pcdha1-202ENSMUST00000193839 Fyco1Q8VDC1 1437 aa18.77■□□□□ 0.59
Pcdha1-202ENSMUST00000193839 Dhx29Q6PGC1 1365 aaKnown RBP18.77■□□□□ 0.59
Pcdha1-202ENSMUST00000193839 Rpap1Q80TE0 1409 aa18.76■□□□□ 0.59
Pcdha1-202ENSMUST00000193839 Ccdc9Q8VC31 543 aaKnown RBP18.73■□□□□ 0.59
Pcdha1-202ENSMUST00000193839 BicraF8VPZ9 1578 aa18.7■□□□□ 0.58
Pcdha1-202ENSMUST00000193839 Rgl3Q3UYI5 709 aa18.69■□□□□ 0.58
Pcdha1-202ENSMUST00000193839 AknaQ80VW7 1404 aa18.69■□□□□ 0.58
Pcdha1-202ENSMUST00000193839 Rrp7aQ9D1C9 280 aaKnown RBP18.68■□□□□ 0.58
Pcdha1-202ENSMUST00000193839 1700123L14RikQ3V2K7 440 aa18.67■□□□□ 0.58
Pcdha1-202ENSMUST00000193839 Plppr3Q7TPB0 716 aa18.66■□□□□ 0.58
Pcdha1-202ENSMUST00000193839 Dhx57Q6P5D3 1388 aaKnown RBP18.65■□□□□ 0.58
Pcdha1-202ENSMUST00000193839 Efcab5A0JP43 1406 aa18.64■□□□□ 0.57
Pcdha1-202ENSMUST00000193839 Safb2Q80YR5 991 aaKnown RBP18.63■□□□□ 0.57
Pcdha1-202ENSMUST00000193839 Calr4Q3TQS0 420 aa18.63■□□□□ 0.57
Pcdha1-202ENSMUST00000193839 Arhgap35Q91YM2 1499 aa18.62■□□□□ 0.57
Pcdha1-202ENSMUST00000193839 Prdm10Q3UTQ7 1184 aa18.59■□□□□ 0.57
Pcdha1-202ENSMUST00000193839 Top2aQ01320 1528 aaKnown RBP18.58■□□□□ 0.57
Pcdha1-202ENSMUST00000193839 Shroom4Q1W617 1475 aa18.58■□□□□ 0.56
Pcdha1-202ENSMUST00000193839 DaxxO35613 739 aa18.57■□□□□ 0.56
Pcdha1-202ENSMUST00000193839 Frmpd1A2AKB4 1549 aa18.57■□□□□ 0.56
Pcdha1-202ENSMUST00000193839 Cwc22Q8C5N3 908 aaKnown RBP18.56■□□□□ 0.56
Pcdha1-202ENSMUST00000193839 Mroh3A0A1D5RM54 893 aa18.55■□□□□ 0.56
Pcdha1-202ENSMUST00000193839 Mrs2Q5NCE8 434 aa18.54■□□□□ 0.56
Pcdha1-202ENSMUST00000193839 Cc2d2aQ8CFW7 1633 aa18.53■□□□□ 0.56
Pcdha1-202ENSMUST00000193839 Upf2A2AT37 1269 aaKnown RBP18.52■□□□□ 0.55
Pcdha1-202ENSMUST00000193839 NrkQ9R0G8 1455 aa18.51■□□□□ 0.55
Pcdha1-202ENSMUST00000193839 Aebp2Q9Z248 504 aaKnown RBP18.51■□□□□ 0.55
Pcdha1-202ENSMUST00000193839 Gm38655A0A286YDK6 273 aa18.51■□□□□ 0.55
Pcdha1-202ENSMUST00000193839 Card11Q8CIS0 1159 aa18.5■□□□□ 0.55
Pcdha1-202ENSMUST00000193839 Map4P27546 1125 aaKnown RBP18.49■□□□□ 0.55
Pcdha1-202ENSMUST00000193839 Grwd1Q810D6 446 aaKnown RBP18.49■□□□□ 0.55
Pcdha1-202ENSMUST00000193839 Cabp1Q9JLK7 227 aa18.48■□□□□ 0.55
Pcdha1-202ENSMUST00000193839 Wdr43Q6ZQL4 677 aaKnown RBP18.48■□□□□ 0.55
Pcdha1-202ENSMUST00000193839 Srpk2O54781 681 aaKnown RBP18.47■□□□□ 0.55
Pcdha1-202ENSMUST00000193839 IqubQ8CDK3 788 aa18.46■□□□□ 0.55
Pcdha1-202ENSMUST00000193839 Pkd2O35245 966 aa18.45■□□□□ 0.54
Pcdha1-202ENSMUST00000193839 Hspa5P20029 655 aaKnown RBP18.44■□□□□ 0.54
Pcdha1-202ENSMUST00000193839 P3h3Q8CG70 732 aa18.44■□□□□ 0.54
Pcdha1-202ENSMUST00000193839 Lemd3Q9WU40 921 aa18.44■□□□□ 0.54
Pcdha1-202ENSMUST00000193839 Wdr62Q3U3T8 1523 aa18.43■□□□□ 0.54
Pcdha1-202ENSMUST00000193839 Kdm2aP59997 1161 aa18.43■□□□□ 0.54
Pcdha1-202ENSMUST00000193839 Ccnb3Q810T2 1396 aa18.43■□□□□ 0.54
Pcdha1-202ENSMUST00000193839 Plekhh2Q8C115 1491 aa18.42■□□□□ 0.54
Pcdha1-202ENSMUST00000193839 Arid3cA6PWV5 409 aa18.42■□□□□ 0.54
Pcdha1-202ENSMUST00000193839 Duox2A2AQ99 1517 aa18.42■□□□□ 0.54
Pcdha1-202ENSMUST00000193839 Polr1aO35134 1717 aaKnown RBP18.42■□□□□ 0.54
Pcdha1-202ENSMUST00000193839 Ppp4r2Q0VGB7 417 aa18.42■□□□□ 0.54
Pcdha1-202ENSMUST00000193839 Mrc2Q64449 1479 aa18.41■□□□□ 0.54
Pcdha1-202ENSMUST00000193839 Gm20521D3Z5F7 333 aa18.41■□□□□ 0.54
Pcdha1-202ENSMUST00000193839 WrnO09053 1401 aa18.41■□□□□ 0.54
Pcdha1-202ENSMUST00000193839 UacaQ8CGB3 1411 aa18.4■□□□□ 0.54
Pcdha1-202ENSMUST00000193839 PogzQ8BZH4 1409 aaKnown RBP18.4■□□□□ 0.54
Pcdha1-202ENSMUST00000193839 Grin2bQ01097 1482 aa18.39■□□□□ 0.53
Pcdha1-202ENSMUST00000193839 Mphosph9A6H5Y1 991 aa18.39■□□□□ 0.53
Pcdha1-202ENSMUST00000193839 Ppp1r18Q8BQ30 594 aa18.38■□□□□ 0.53
Pcdha1-202ENSMUST00000193839 Map3k1P53349 1493 aa18.38■□□□□ 0.53
Pcdha1-202ENSMUST00000193839 Polr3glQ8R0C0 218 aa18.37■□□□□ 0.53
Pcdha1-202ENSMUST00000193839 Top2bQ64511 1612 aa18.37■□□□□ 0.53
Pcdha1-202ENSMUST00000193839 Urb2E9Q7L1 1524 aaKnown RBP18.35■□□□□ 0.53
Pcdha1-202ENSMUST00000193839 Stk24Q99KH8 431 aa18.34■□□□□ 0.53
Pcdha1-202ENSMUST00000193839 Ncoa2Q61026 1462 aa18.33■□□□□ 0.52
Pcdha1-202ENSMUST00000193839 Trak1Q6PD31 939 aa18.33■□□□□ 0.52
Pcdha1-202ENSMUST00000193839 Hsp90aa1P07901 733 aaKnown RBP18.33■□□□□ 0.52
Pcdha1-202ENSMUST00000193839 Jph4Q80WT0 628 aa18.32■□□□□ 0.52
Pcdha1-202ENSMUST00000193839 Rad54l2Q99NG0 1466 aa18.31■□□□□ 0.52
Pcdha1-202ENSMUST00000193839 Fam71e1A1L3C1 212 aa18.31■□□□□ 0.52
Pcdha1-202ENSMUST00000193839 Nup155Q99P88 1391 aaKnown RBP18.29■□□□□ 0.52
Pcdha1-202ENSMUST00000193839 Cux1P53564 1515 aa18.29■□□□□ 0.52
Pcdha1-202ENSMUST00000193839 Rad21Q61550 635 aaKnown RBP18.28■□□□□ 0.52
Pcdha1-202ENSMUST00000193839 Soga1E1U8D0 1418 aa18.28■□□□□ 0.52
Pcdha1-202ENSMUST00000193839 Sart1Q9Z315 806 aaKnown RBP18.27■□□□□ 0.52
Pcdha1-202ENSMUST00000193839 Mroh2bQ7M6Y6 1581 aa18.26■□□□□ 0.51
Pcdha1-202ENSMUST00000193839 Exosc9Q9JHI7 438 aaKnown RBP18.26■□□□□ 0.51
Pcdha1-202ENSMUST00000193839 Pabpn1Q8CCS6 302 aaKnown RBP18.25■□□□□ 0.51
Pcdha1-202ENSMUST00000193839 Lamc3Q9R0B6 1581 aa18.24■□□□□ 0.51
Pcdha1-202ENSMUST00000193839 Rsph4aQ8BYM7 716 aa18.24■□□□□ 0.51
Retrieved 100 of 22,080 RNA–protein pairs in 56.3 ms