RNA–Protein interactions for RNA: ENSMUST00000108531.7

Nup88-203, Transcript of Nuclear pore complex protein Nup88, mousemouse

TSL 1 (best) BASIC

Gene Nup88, Length 2,453 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88-203ENSMUST00000108531 Baz1bQ9Z277 1479 aa18.73■□□□□ 0.59
Nup88-203ENSMUST00000108531 Naip1Q9QWK5 1403 aa18.71■□□□□ 0.59
Nup88-203ENSMUST00000108531 AqrQ8CFQ3 1481 aaKnown RBP18.71■□□□□ 0.59
Nup88-203ENSMUST00000108531 Eid3Q3V124 375 aa18.68■□□□□ 0.58
Nup88-203ENSMUST00000108531 Pcf11G3X9Z4 1553 aa18.68■□□□□ 0.58
Nup88-203ENSMUST00000108531 Slx4Q6P1D7 1565 aa18.64■□□□□ 0.57
Nup88-203ENSMUST00000108531 BlmO88700 1416 aa18.64■□□□□ 0.57
Nup88-203ENSMUST00000108531 Lmo7E9PYF4 1699 aaKnown RBP18.61■□□□□ 0.57
Nup88-203ENSMUST00000108531 CenpbP27790 599 aa18.56■□□□□ 0.56
Nup88-203ENSMUST00000108531 CntlnA2AM05 1397 aa18.54■□□□□ 0.56
Nup88-203ENSMUST00000108531 Carmil1Q6EDY6 1374 aa18.53■□□□□ 0.56
Nup88-203ENSMUST00000108531 Peg3Q3URU2 1571 aa18.53■□□□□ 0.56
Nup88-203ENSMUST00000108531 Cux1P53564 1515 aa18.52■□□□□ 0.56
Nup88-203ENSMUST00000108531 Efcab5A0JP43 1406 aa18.49■□□□□ 0.55
Nup88-203ENSMUST00000108531 UacaQ8CGB3 1411 aa18.48■□□□□ 0.55
Nup88-203ENSMUST00000108531 Fyco1Q8VDC1 1437 aa18.47■□□□□ 0.55
Nup88-203ENSMUST00000108531 Fam50aQ9WV03 339 aaKnown RBP18.47■□□□□ 0.55
Nup88-203ENSMUST00000108531 Fhad1A6PWD2 1420 aa18.47■□□□□ 0.55
Nup88-203ENSMUST00000108531 3425401B19RikD3Z1D3 1412 aa18.47■□□□□ 0.55
Nup88-203ENSMUST00000108531 Cux2P70298 1426 aa18.46■□□□□ 0.55
Nup88-203ENSMUST00000108531 Ankrd36D3Z4K0 1415 aa18.46■□□□□ 0.54
Nup88-203ENSMUST00000108531 Tnnt3Q9QZ47 272 aa18.45■□□□□ 0.54
Nup88-203ENSMUST00000108531 Urb2E9Q7L1 1524 aaKnown RBP18.45■□□□□ 0.54
Nup88-203ENSMUST00000108531 Phldb1Q6PDH0 1371 aaKnown RBP18.44■□□□□ 0.54
Nup88-203ENSMUST00000108531 Mia2Q91ZV0 1396 aa18.44■□□□□ 0.54
Nup88-203ENSMUST00000108531 Rpap1Q80TE0 1409 aa18.43■□□□□ 0.54
Nup88-203ENSMUST00000108531 Lmod2Q3UHZ5 550 aa18.42■□□□□ 0.54
Nup88-203ENSMUST00000108531 Ccer2J3QPU5 274 aa18.41■□□□□ 0.54
Nup88-203ENSMUST00000108531 Vps8Q0P5W1 1427 aa18.41■□□□□ 0.54
Nup88-203ENSMUST00000108531 PogzQ8BZH4 1409 aaKnown RBP18.4■□□□□ 0.54
Nup88-203ENSMUST00000108531 LrpprcQ6PB66 1392 aaKnown RBP18.4■□□□□ 0.54
Nup88-203ENSMUST00000108531 Gm38655A0A286YDK6 273 aa18.39■□□□□ 0.53
Nup88-203ENSMUST00000108531 NclP09405 707 aaKnown RBP18.39■□□□□ 0.53
Nup88-203ENSMUST00000108531 Duox2A2AQ99 1517 aa18.38■□□□□ 0.53
Nup88-203ENSMUST00000108531 Npm1Q61937 292 aaKnown RBP18.37■□□□□ 0.53
Nup88-203ENSMUST00000108531 Myt1Q8CFC2 1127 aa18.36■□□□□ 0.53
Nup88-203ENSMUST00000108531 Crocc2F6XLV1 1638 aa18.36■□□□□ 0.53
Nup88-203ENSMUST00000108531 SynmQ70IV5 1561 aa18.36■□□□□ 0.53
Nup88-203ENSMUST00000108531 Thoc2B1AZI6 1594 aaKnown RBP18.35■□□□□ 0.53
Nup88-203ENSMUST00000108531 Dhx29Q6PGC1 1365 aaKnown RBP18.35■□□□□ 0.53
Nup88-203ENSMUST00000108531 Hnrnpul2Q00PI9 745 aaKnown RBP18.35■□□□□ 0.53
Nup88-203ENSMUST00000108531 Gm1043A0A140LJC2 1431 aa18.35■□□□□ 0.53
Nup88-203ENSMUST00000108531 Polr1aO35134 1717 aaKnown RBP18.34■□□□□ 0.53
Nup88-203ENSMUST00000108531 Naip2Q9QUK4 1447 aa18.34■□□□□ 0.53
Nup88-203ENSMUST00000108531 Gm7298A0A0N4SVU1 1476 aa18.33■□□□□ 0.52
Nup88-203ENSMUST00000108531 Gm13697A2AK42 830 aa18.31■□□□□ 0.52
Nup88-203ENSMUST00000108531 Camsap2Q8C1B1 1461 aa18.31■□□□□ 0.52
Nup88-203ENSMUST00000108531 Samd9lQ69Z37 1561 aa18.3■□□□□ 0.52
Nup88-203ENSMUST00000108531 Hspa5P20029 655 aaKnown RBP18.3■□□□□ 0.52
Nup88-203ENSMUST00000108531 Stra8P70278 393 aa18.3■□□□□ 0.52
Nup88-203ENSMUST00000108531 Aebp1Q640N1 1128 aa18.29■□□□□ 0.52
Nup88-203ENSMUST00000108531 Mapk8ip2Q9ERE9 830 aa18.29■□□□□ 0.52
Nup88-203ENSMUST00000108531 Ubl4bQ9CQ84 188 aa18.27■□□□□ 0.52
Nup88-203ENSMUST00000108531 A2mQ6GQT1 1474 aa18.25■□□□□ 0.51
Nup88-203ENSMUST00000108531 Fam135aQ6NS59 1506 aa18.24■□□□□ 0.51
Nup88-203ENSMUST00000108531 Znf710Q3U288 666 aa18.23■□□□□ 0.51
Nup88-203ENSMUST00000108531 Cul7Q8VE73 1689 aa18.22■□□□□ 0.51
Nup88-203ENSMUST00000108531 SafbD3YXK2 937 aaKnown RBP18.2■□□□□ 0.5
Nup88-203ENSMUST00000108531 Lmtk2Q3TYD6 1471 aa18.2■□□□□ 0.5
Nup88-203ENSMUST00000108531 Naip5Q9R016 1403 aa18.19■□□□□ 0.5
Nup88-203ENSMUST00000108531 Fhod3Q76LL6 1578 aa18.19■□□□□ 0.5
Nup88-203ENSMUST00000108531 Dennd4bQ3U1Y4 1499 aa18.19■□□□□ 0.5
Nup88-203ENSMUST00000108531 Rad54l2Q99NG0 1466 aa18.18■□□□□ 0.5
Nup88-203ENSMUST00000108531 Ncoa2Q61026 1462 aa18.17■□□□□ 0.5
Nup88-203ENSMUST00000108531 Kif21aQ9QXL2 1672 aa18.16■□□□□ 0.5
Nup88-203ENSMUST00000108531 Ccnb3Q810T2 1396 aa18.16■□□□□ 0.5
Nup88-203ENSMUST00000108531 EprsQ8CGC7 1512 aaKnown RBP18.13■□□□□ 0.49
Nup88-203ENSMUST00000108531 Abca5Q8K448 1642 aa18.12■□□□□ 0.49
Nup88-203ENSMUST00000108531 Gcc2Q8CHG3 1679 aa18.11■□□□□ 0.49
Nup88-203ENSMUST00000108531 Gpatch8A2A6A1 1505 aa18.1■□□□□ 0.49
Nup88-203ENSMUST00000108531 Pla2r1Q62028 1487 aa18.1■□□□□ 0.49
Nup88-203ENSMUST00000108531 Smg6P61406 1418 aaKnown RBP18.1■□□□□ 0.49
Nup88-203ENSMUST00000108531 Ube2uB1AUC4 352 aa18.08■□□□□ 0.49
Nup88-203ENSMUST00000108531 CadpsQ80TJ1 1355 aa18.06■□□□□ 0.48
Nup88-203ENSMUST00000108531 Chic2Q9D9G3 165 aa18.06■□□□□ 0.48
Nup88-203ENSMUST00000108531 Kif27Q7M6Z4 1394 aa18.05■□□□□ 0.48
Nup88-203ENSMUST00000108531 NexmifQ5DTT1 1515 aa18.05■□□□□ 0.48
Nup88-203ENSMUST00000108531 Fam71e1A1L3C1 212 aa18.05■□□□□ 0.48
Nup88-203ENSMUST00000108531 Setbp1Q9Z180 1582 aa18.04■□□□□ 0.48
Nup88-203ENSMUST00000108531 Pprc1Q6NZN1 1644 aa18.04■□□□□ 0.48
Nup88-203ENSMUST00000108531 Sin3aQ60520 1274 aaKnown RBP18.04■□□□□ 0.48
Nup88-203ENSMUST00000108531 Rfx7F8VPJ6 1459 aa18.03■□□□□ 0.48
Nup88-203ENSMUST00000108531 Magi3Q9EQJ9 1476 aa18.02■□□□□ 0.47
Nup88-203ENSMUST00000108531 BC005561E9Q5E2 1589 aa18.02■□□□□ 0.47
Nup88-203ENSMUST00000108531 Anp32aO35381 247 aa17.99■□□□□ 0.47
Nup88-203ENSMUST00000108531 Mphosph9A6H5Y1 991 aa17.98■□□□□ 0.47
Nup88-203ENSMUST00000108531 Calr4Q3TQS0 420 aa17.96■□□□□ 0.47
Nup88-203ENSMUST00000108531 Adamts12Q811B3 1600 aa17.96■□□□□ 0.47
Nup88-203ENSMUST00000108531 Mug1P28665 1476 aa17.95■□□□□ 0.46
Nup88-203ENSMUST00000108531 Grin2aP35436 1464 aa17.95■□□□□ 0.46
Nup88-203ENSMUST00000108531 WizO88286 1684 aaKnown RBP17.94■□□□□ 0.46
Nup88-203ENSMUST00000108531 Soga1E1U8D0 1418 aa17.93■□□□□ 0.46
Nup88-203ENSMUST00000108531 Ift140E9PY46 1464 aa17.92■□□□□ 0.46
Nup88-203ENSMUST00000108531 Ncoa1P70365 1447 aa17.92■□□□□ 0.46
Nup88-203ENSMUST00000108531 Rprd2Q6NXI6 1469 aaKnown RBP17.91■□□□□ 0.46
Nup88-203ENSMUST00000108531 Usp47Q8BY87 1376 aa17.89■□□□□ 0.45
Nup88-203ENSMUST00000108531 Plekhh2Q8C115 1491 aa17.89■□□□□ 0.45
Nup88-203ENSMUST00000108531 Abcc5Q9R1X5 1436 aa17.88■□□□□ 0.45
Nup88-203ENSMUST00000108531 Cabp1Q9JLK7 227 aa17.88■□□□□ 0.45
Nup88-203ENSMUST00000108531 Slc24a1Q91WD8 1130 aa17.87■□□□□ 0.45
Retrieved 100 of 22,080 RNA–protein pairs in 44.6 ms