RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 SPACA4Q8TDM5 124 aa12.28□□□□□ -0.44
CLN3-262ENST00000637699 AP1S3Q96PC3 154 aa12.28□□□□□ -0.44
CLN3-262ENST00000637699 TRAV8-4A0A0B4J246 113 aa12.27□□□□□ -0.45
CLN3-262ENST00000637699 P01737 135 aa12.27□□□□□ -0.45
CLN3-262ENST00000637699 IGLV4-60A0A075B6I1 120 aa12.26□□□□□ -0.45
CLN3-262ENST00000637699 IGLC6P0CF74 106 aa12.26□□□□□ -0.45
CLN3-262ENST00000637699 ALKAL2Q6UX46 152 aa12.26□□□□□ -0.45
CLN3-262ENST00000637699 OR2D3Q8NGH3 330 aa12.26□□□□□ -0.45
CLN3-262ENST00000637699 SMIM12Q96EX1 92 aa12.26□□□□□ -0.45
CLN3-262ENST00000637699 GFRA4Q9GZZ7 299 aa12.26□□□□□ -0.45
CLN3-262ENST00000637699 MGPP08493 103 aa12.25□□□□□ -0.45
CLN3-262ENST00000637699 ODF1Q14990 250 aa12.25□□□□□ -0.45
CLN3-262ENST00000637699 C7orf33Q8WU49 177 aa12.25□□□□□ -0.45
CLN3-262ENST00000637699 TPPP3Q9BW30 176 aa12.25□□□□□ -0.45
CLN3-262ENST00000637699 PLAC8Q9NZF1 115 aa12.25□□□□□ -0.45
CLN3-262ENST00000637699 M0QY20 66 aa12.24□□□□□ -0.45
CLN3-262ENST00000637699 FER1L6-AS1Q8NA97 138 aa12.24□□□□□ -0.45
CLN3-262ENST00000637699 TMEM243Q9BU79 118 aa12.24□□□□□ -0.45
CLN3-262ENST00000637699 TAGLN2P37802 199 aaKnown RBP12.23□□□□□ -0.45
CLN3-262ENST00000637699 NKX2-5P52952 324 aaPredicted RBP12.23□□□□□ -0.45
CLN3-262ENST00000637699 RPS20P60866 119 aaKnown RBP12.23□□□□□ -0.45
CLN3-262ENST00000637699 A0A1B0GUV1 79 aa12.22□□□□□ -0.45
CLN3-262ENST00000637699 H7C1H1 209 aa12.22□□□□□ -0.45
CLN3-262ENST00000637699 COX6A2Q02221 97 aa12.22□□□□□ -0.45
CLN3-262ENST00000637699 SUMO4Q6EEV6 95 aa12.22□□□□□ -0.45
CLN3-262ENST00000637699 NUDT10Q8NFP7 164 aa12.22□□□□□ -0.45
CLN3-262ENST00000637699 GTSF1Q8WW33 167 aa12.22□□□□□ -0.45
CLN3-262ENST00000637699 NUDT11Q96G61 164 aa12.22□□□□□ -0.45
CLN3-262ENST00000637699 LINC01600Q96MT4 127 aa12.22□□□□□ -0.45
CLN3-262ENST00000637699 BLOC1S1P78537 153 aa12.21□□□□□ -0.45
CLN3-262ENST00000637699 LYPD6BQ8NI32 183 aa12.21□□□□□ -0.45
CLN3-262ENST00000637699 OCC1Q8TAD7 63 aa12.21□□□□□ -0.45
CLN3-262ENST00000637699 K7EN84 100 aa12.2□□□□□ -0.46
CLN3-262ENST00000637699 MAJINQ3KP22 176 aa12.2□□□□□ -0.46
CLN3-262ENST00000637699 WDR73Q6P4I2 378 aa12.2□□□□□ -0.46
CLN3-262ENST00000637699 LYZL1Q6UWQ5 148 aa12.2□□□□□ -0.46
CLN3-262ENST00000637699 C15orf56Q8N910 161 aa12.2□□□□□ -0.46
CLN3-262ENST00000637699 BIN3Q9NQY0 253 aa12.2□□□□□ -0.46
CLN3-262ENST00000637699 IGKV2-24A0A0C4DH68 120 aa12.19□□□□□ -0.46
CLN3-262ENST00000637699 XKRY2A2RUG3 117 aa12.19□□□□□ -0.46
CLN3-262ENST00000637699 GAGE12HA6NDE8 117 aa12.19□□□□□ -0.46
CLN3-262ENST00000637699 CACNG7P62955 275 aa12.19□□□□□ -0.46
CLN3-262ENST00000637699 PRSS3P2Q8NHM4 247 aa12.19□□□□□ -0.46
CLN3-262ENST00000637699 RNASE7Q9H1E1 156 aaKnown RBP12.19□□□□□ -0.46
CLN3-262ENST00000637699 IGKV3OR2-268A0A0C4DH90 116 aa12.18□□□□□ -0.46
CLN3-262ENST00000637699 F2Z2F3 143 aa12.18□□□□□ -0.46
CLN3-262ENST00000637699 UBE2L6O14933 153 aa12.18□□□□□ -0.46
CLN3-262ENST00000637699 RPS10P46783 165 aaKnown RBP12.18□□□□□ -0.46
CLN3-262ENST00000637699 PRR3P79522 188 aaKnown RBP12.18□□□□□ -0.46
CLN3-262ENST00000637699 HIGD2BQ4VC39 106 aa12.18□□□□□ -0.46
CLN3-262ENST00000637699 CFAP161Q6P656 301 aa12.18□□□□□ -0.46
CLN3-262ENST00000637699 RASL11AQ6T310 242 aa12.18□□□□□ -0.46
CLN3-262ENST00000637699 NDUFS6O75380 124 aaKnown RBP12.17□□□□□ -0.46
CLN3-262ENST00000637699 NTF3P20783 257 aa12.17□□□□□ -0.46
CLN3-262ENST00000637699 AMTP48728 403 aa12.16□□□□□ -0.46
CLN3-262ENST00000637699 STPG4Q8N801 248 aa12.16□□□□□ -0.46
CLN3-262ENST00000637699 TMEM250H0YL14 139 aa12.15□□□□□ -0.46
CLN3-262ENST00000637699 PGLYRP4Q96LB8 373 aa12.15□□□□□ -0.46
CLN3-262ENST00000637699 RPP21Q9H633 154 aaKnown RBP12.15□□□□□ -0.46
CLN3-262ENST00000637699 NIT2Q9NQR4 276 aa12.15□□□□□ -0.46
CLN3-262ENST00000637699 A0A0J9YXV3 536 aa12.14□□□□□ -0.47
CLN3-262ENST00000637699 CTRLP40313 264 aa12.14□□□□□ -0.47
CLN3-262ENST00000637699 COTL1Q14019 142 aa12.14□□□□□ -0.47
CLN3-262ENST00000637699 TRGC1P0CF51 173 aa12.13□□□□□ -0.47
CLN3-262ENST00000637699 CNFNQ9BYD5 112 aa12.13□□□□□ -0.47
CLN3-262ENST00000637699 CEBPGP53567 150 aa12.12□□□□□ -0.47
CLN3-262ENST00000637699 TWIST1Q15672 202 aa12.12□□□□□ -0.47
CLN3-262ENST00000637699 A0A096LNI7 61 aa12.11□□□□□ -0.47
CLN3-262ENST00000637699 KRTAP10-8P60410 259 aa12.11□□□□□ -0.47
CLN3-262ENST00000637699 CHCHD10Q8WYQ3 142 aaPredicted RBP12.11□□□□□ -0.47
CLN3-262ENST00000637699 EIF5A2Q9GZV4 153 aaKnown RBP12.11□□□□□ -0.47
CLN3-262ENST00000637699 GVQW2A0A096LPI5 108 aaPredicted RBP12.09□□□□□ -0.47
CLN3-262ENST00000637699 GATCO43716 136 aaKnown RBP12.09□□□□□ -0.47
CLN3-262ENST00000637699 REG3GQ6UW15 175 aa12.09□□□□□ -0.47
CLN3-262ENST00000637699 SPINK6Q6UWN8 80 aa12.09□□□□□ -0.47
CLN3-262ENST00000637699 FAM210AQ96ND0 272 aa12.09□□□□□ -0.47
CLN3-262ENST00000637699 FOXA3P55318 350 aaPredicted RBP12.08□□□□□ -0.48
CLN3-262ENST00000637699 AMMECR1LQ6DCA0 310 aa12.08□□□□□ -0.48
CLN3-262ENST00000637699 FAM231DQ6ZW35 169 aa12.08□□□□□ -0.48
CLN3-262ENST00000637699 SRP19P09132 144 aaKnown RBP12.07□□□□□ -0.48
CLN3-262ENST00000637699 RNASEKQ6P5S7 137 aaKnown RBP12.07□□□□□ -0.48
CLN3-262ENST00000637699 GATD1Q8NB37 220 aa12.07□□□□□ -0.48
CLN3-262ENST00000637699 SMIM7Q9BQ49 75 aa12.07□□□□□ -0.48
CLN3-262ENST00000637699 TRAV26-2A0A0B4J265 109 aa12.06□□□□□ -0.48
CLN3-262ENST00000637699 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.05□□□□□ -0.48
CLN3-262ENST00000637699 IGKV2-29A2NJV5 120 aaPredicted RBP12.05□□□□□ -0.48
CLN3-262ENST00000637699 A8MWL6 223 aa12.05□□□□□ -0.48
CLN3-262ENST00000637699 LINC01551Q86U37 167 aa12.05□□□□□ -0.48
CLN3-262ENST00000637699 LINC00526Q96FQ7 95 aa12.05□□□□□ -0.48
CLN3-262ENST00000637699 LINC00474Q9P2X8 69 aa12.05□□□□□ -0.48
CLN3-262ENST00000637699 ZNF727A8MUV8 499 aa12.04□□□□□ -0.48
CLN3-262ENST00000637699 GAS8-AS1O95177 125 aa12.04□□□□□ -0.48
CLN3-262ENST00000637699 FOXI1Q12951 378 aa12.04□□□□□ -0.48
CLN3-262ENST00000637699 SRSF9Q13242 221 aaKnown RBP eCLIP12.04□□□□□ -0.48
CLN3-262ENST00000637699 XCL1P47992 114 aa12.03□□□□□ -0.48
CLN3-262ENST00000637699 CT83Q5H943 113 aa12.03□□□□□ -0.48
CLN3-262ENST00000637699 Q6ZRP5 223 aa12.03□□□□□ -0.48
CLN3-262ENST00000637699 FGF6P10767 208 aa12.02□□□□□ -0.49
CLN3-262ENST00000637699 RPL39LQ96EH5 51 aaKnown RBP12.02□□□□□ -0.49
CLN3-262ENST00000637699 LPAP08519 4548 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms