RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 TRAV9-1A0A075B6T8 112 aa12.86□□□□□ -0.35
CLN3-260ENST00000637578 FRZBQ92765 325 aa12.86□□□□□ -0.35
CLN3-260ENST00000637578 MRAP2Q96G30 205 aa12.86□□□□□ -0.35
CLN3-260ENST00000637578 MRPL51Q4U2R6 128 aaKnown RBP12.85□□□□□ -0.35
CLN3-260ENST00000637578 SMKR1H3BMG3 65 aa12.84□□□□□ -0.35
CLN3-260ENST00000637578 NCR2O95944 276 aa12.84□□□□□ -0.35
CLN3-260ENST00000637578 FUSP35637 526 aaKnown RBP eCLIP12.84□□□□□ -0.35
CLN3-260ENST00000637578 NIT1Q86X76 327 aa12.84□□□□□ -0.35
CLN3-260ENST00000637578 KRTAP4-5Q9BYR2 181 aa12.84□□□□□ -0.35
CLN3-260ENST00000637578 Q9HAA7 133 aa12.84□□□□□ -0.35
CLN3-260ENST00000637578 RPS10P46783 165 aaKnown RBP12.83□□□□□ -0.36
CLN3-260ENST00000637578 DAZ4Q86SG3 579 aaKnown RBP12.83□□□□□ -0.36
CLN3-260ENST00000637578 DAZ3Q9NR90 486 aaKnown RBP12.83□□□□□ -0.36
CLN3-260ENST00000637578 PSCAO43653 123 aa12.82□□□□□ -0.36
CLN3-260ENST00000637578 TRAV8-3A0A0A6YYJ7 113 aa12.81□□□□□ -0.36
CLN3-260ENST00000637578 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.81□□□□□ -0.36
CLN3-260ENST00000637578 CHCHD7Q9BUK0 85 aa12.81□□□□□ -0.36
CLN3-260ENST00000637578 TM2D2Q9BX73 214 aa12.81□□□□□ -0.36
CLN3-260ENST00000637578 ABCA13Q86UQ4 5058 aa12.8□□□□□ -0.36
CLN3-260ENST00000637578 TMEM136Q6ZRR5 245 aa12.8□□□□□ -0.36
CLN3-260ENST00000637578 MAPKAPK5-AS1Q8N8E1 139 aa12.8□□□□□ -0.36
CLN3-260ENST00000637578 NRACQ8N912 160 aa12.8□□□□□ -0.36
CLN3-260ENST00000637578 TRBV6-8A0A0A6YYG3 113 aa12.79□□□□□ -0.36
CLN3-260ENST00000637578 TRBV6-5A0A0K0K1A5 114 aa12.79□□□□□ -0.36
CLN3-260ENST00000637578 SDHAF1A6NFY7 115 aa12.79□□□□□ -0.36
CLN3-260ENST00000637578 D6R8Y8 96 aa12.79□□□□□ -0.36
CLN3-260ENST00000637578 CKS2P33552 79 aa12.79□□□□□ -0.36
CLN3-260ENST00000637578 TGIF2-C20orf24A0A0A6YYL0 155 aa12.78□□□□□ -0.36
CLN3-260ENST00000637578 ELOBQ15370 118 aa12.78□□□□□ -0.36
CLN3-260ENST00000637578 NTM-AS1Q6ZSK4 140 aa12.78□□□□□ -0.36
CLN3-260ENST00000637578 Q8N1X5 172 aa12.78□□□□□ -0.36
CLN3-260ENST00000637578 DEFB104AQ8WTQ1 72 aa12.78□□□□□ -0.36
CLN3-260ENST00000637578 NTN5Q8WTR8 489 aaPredicted RBP12.78□□□□□ -0.36
CLN3-260ENST00000637578 ST20Q9HBF5 79 aa12.78□□□□□ -0.36
CLN3-260ENST00000637578 KRTAP10-1P60331 282 aa12.77□□□□□ -0.36
CLN3-260ENST00000637578 Q8N814 137 aa12.77□□□□□ -0.36
CLN3-260ENST00000637578 PPP1R17O96001 155 aa12.77□□□□□ -0.37
CLN3-260ENST00000637578 CBLN2Q8IUK8 224 aa12.77□□□□□ -0.37
CLN3-260ENST00000637578 TMEM70Q9BUB7 260 aa12.77□□□□□ -0.37
CLN3-260ENST00000637578 PPBPP02775 128 aa12.76□□□□□ -0.37
CLN3-260ENST00000637578 TMEM97Q5BJF2 176 aa12.76□□□□□ -0.37
CLN3-260ENST00000637578 A0A087WX48 190 aa12.75□□□□□ -0.37
CLN3-260ENST00000637578 TNFRSF6BO95407 300 aa12.75□□□□□ -0.37
CLN3-260ENST00000637578 HLA-DQA1P01909 254 aa12.75□□□□□ -0.37
CLN3-260ENST00000637578 GCSHP23434 173 aa12.75□□□□□ -0.37
CLN3-260ENST00000637578 XGP55808 180 aa12.75□□□□□ -0.37
CLN3-260ENST00000637578 SUMO2P61956 95 aaKnown RBP12.75□□□□□ -0.37
CLN3-260ENST00000637578 ORMDL3Q8N138 153 aa12.75□□□□□ -0.37
CLN3-260ENST00000637578 YPEL4Q96NS1 127 aa12.75□□□□□ -0.37
CLN3-260ENST00000637578 GNB1LQ9BYB4 327 aa12.75□□□□□ -0.37
CLN3-260ENST00000637578 KLK12Q9UKR0 248 aa12.75□□□□□ -0.37
CLN3-260ENST00000637578 COX11Q9Y6N1 276 aa12.75□□□□□ -0.37
CLN3-260ENST00000637578 TRBV24-1A0A075B6N3 115 aa12.74□□□□□ -0.37
CLN3-260ENST00000637578 NPYP01303 97 aa12.74□□□□□ -0.37
CLN3-260ENST00000637578 POLR2KP53803 58 aaKnown RBP12.74□□□□□ -0.37
CLN3-260ENST00000637578 COTL1Q14019 142 aa12.74□□□□□ -0.37
CLN3-260ENST00000637578 SMCO4Q9NRQ5 59 aa12.74□□□□□ -0.37
CLN3-260ENST00000637578 WFDC2Q14508 124 aa12.73□□□□□ -0.37
CLN3-260ENST00000637578 IQCJQ1A5X6 159 aa12.73□□□□□ -0.37
CLN3-260ENST00000637578 COX19Q49B96 90 aa12.73□□□□□ -0.37
CLN3-260ENST00000637578 PRELID3AQ96N28 172 aa12.73□□□□□ -0.37
CLN3-260ENST00000637578 TRBV25-1A0A075B6N4 114 aa12.73□□□□□ -0.37
CLN3-260ENST00000637578 IGLV5-52A0A0A0MRZ9 124 aa12.73□□□□□ -0.37
CLN3-260ENST00000637578 IGHV1-24A0A0C4DH33 117 aa12.73□□□□□ -0.37
CLN3-260ENST00000637578 I3L3M4 83 aa12.73□□□□□ -0.37
CLN3-260ENST00000637578 APCSP02743 223 aa12.73□□□□□ -0.37
CLN3-260ENST00000637578 RMI2Q96E14 147 aa12.73□□□□□ -0.37
CLN3-260ENST00000637578 C20orf78Q9BR46 151 aa12.73□□□□□ -0.37
CLN3-260ENST00000637578 TRBV27A0A0K0K1C4 114 aa12.72□□□□□ -0.37
CLN3-260ENST00000637578 PHOX2AO14813 284 aa12.72□□□□□ -0.37
CLN3-260ENST00000637578 PMCHP20382 165 aa12.72□□□□□ -0.37
CLN3-260ENST00000637578 KIAA1644Q3SXP7 199 aa12.72□□□□□ -0.37
CLN3-260ENST00000637578 CHCHD5Q9BSY4 110 aa12.72□□□□□ -0.37
CLN3-260ENST00000637578 MT-ND6P03923 174 aa12.71□□□□□ -0.37
CLN3-260ENST00000637578 TMEM262E9PQX1 116 aa12.7□□□□□ -0.38
CLN3-260ENST00000637578 VCYO14598 125 aa12.7□□□□□ -0.38
CLN3-260ENST00000637578 TSHBP01222 138 aa12.7□□□□□ -0.38
CLN3-260ENST00000637578 AMTP48728 403 aa12.7□□□□□ -0.38
CLN3-260ENST00000637578 PKIAP61925 76 aa12.7□□□□□ -0.38
CLN3-260ENST00000637578 MPV17L2Q567V2 206 aa12.7□□□□□ -0.38
CLN3-260ENST00000637578 UBE2WQ96B02 151 aa12.7□□□□□ -0.38
CLN3-260ENST00000637578 TMEM243Q9BU79 118 aa12.7□□□□□ -0.38
CLN3-260ENST00000637578 RPL32P62910 135 aaKnown RBP12.69□□□□□ -0.38
CLN3-260ENST00000637578 Q0VG73 95 aa12.69□□□□□ -0.38
CLN3-260ENST00000637578 ENHOQ6UWT2 76 aa12.69□□□□□ -0.38
CLN3-260ENST00000637578 MRPL18Q9H0U6 180 aaKnown RBP12.69□□□□□ -0.38
CLN3-260ENST00000637578 LAMTOR2Q9Y2Q5 125 aa12.69□□□□□ -0.38
CLN3-260ENST00000637578 GAGE6Q13070 117 aa12.69□□□□□ -0.38
CLN3-260ENST00000637578 SMIM2Q9BVW6 85 aa12.69□□□□□ -0.38
CLN3-260ENST00000637578 IGKV2D-24A0A075B6R9 120 aa12.68□□□□□ -0.38
CLN3-260ENST00000637578 FABP9Q0Z7S8 132 aa12.68□□□□□ -0.38
CLN3-260ENST00000637578 BAALCQ8WXS3 180 aa12.68□□□□□ -0.38
CLN3-260ENST00000637578 KIR2DL4Q99706 377 aa12.67□□□□□ -0.38
CLN3-260ENST00000637578 LECT2O14960 151 aa12.66□□□□□ -0.38
CLN3-260ENST00000637578 SCO1O75880 301 aa12.66□□□□□ -0.38
CLN3-260ENST00000637578 TRAPPC1Q9Y5R8 145 aa12.66□□□□□ -0.38
CLN3-260ENST00000637578 ATP6V1G1O75348 118 aa12.65□□□□□ -0.38
CLN3-260ENST00000637578 ANGP03950 147 aaKnown RBP12.65□□□□□ -0.38
CLN3-260ENST00000637578 FCER1GP30273 86 aa12.65□□□□□ -0.38
CLN3-260ENST00000637578 Q8N976 141 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms