RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 PAM16Q9Y3D7 125 aa11.92□□□□□ -0.5
CLN3-252ENST00000636907 LOC100131303A0A0U1RQF7 123 aa11.91□□□□□ -0.5
CLN3-252ENST00000636907 MAJINQ3KP22 176 aa11.91□□□□□ -0.5
CLN3-252ENST00000636907 ERASQ7Z444 233 aa11.91□□□□□ -0.5
CLN3-252ENST00000636907 C20orf203Q8NBC4 194 aa11.91□□□□□ -0.5
CLN3-252ENST00000636907 UBE2D3P61077 147 aa11.91□□□□□ -0.5
CLN3-252ENST00000636907 PKIAP61925 76 aa11.91□□□□□ -0.5
CLN3-252ENST00000636907 UBE2D2P62837 147 aa11.91□□□□□ -0.5
CLN3-252ENST00000636907 LURAP1LQ8IV03 231 aa11.91□□□□□ -0.5
CLN3-252ENST00000636907 LINC01549A6NIU2 74 aa11.9□□□□□ -0.5
CLN3-252ENST00000636907 IGIPA6NJ69 53 aa11.9□□□□□ -0.5
CLN3-252ENST00000636907 ODF1Q14990 250 aa11.9□□□□□ -0.5
CLN3-252ENST00000636907 KPRPQ5T749 579 aaPredicted RBP11.9□□□□□ -0.5
CLN3-252ENST00000636907 Q6ZN92 141 aa11.9□□□□□ -0.5
CLN3-252ENST00000636907 ZMAT4Q9H898 229 aa11.9□□□□□ -0.5
CLN3-252ENST00000636907 TRAV9-2A0A087WT02 112 aa11.89□□□□□ -0.51
CLN3-252ENST00000636907 K7EIL1 84 aa11.89□□□□□ -0.51
CLN3-252ENST00000636907 DAD1P61803 113 aa11.89□□□□□ -0.51
CLN3-252ENST00000636907 COTL1Q14019 142 aa11.89□□□□□ -0.51
CLN3-252ENST00000636907 SPATA45Q537H7 98 aa11.89□□□□□ -0.51
CLN3-252ENST00000636907 BAALCQ8WXS3 180 aa11.89□□□□□ -0.51
CLN3-252ENST00000636907 CHCHD7Q9BUK0 85 aa11.89□□□□□ -0.51
CLN3-252ENST00000636907 HHLA3Q9XRX5 114 aa11.89□□□□□ -0.51
CLN3-252ENST00000636907 NOTCH1P46531 2555 aa11.89□□□□□ -0.51
CLN3-252ENST00000636907 SPART-AS1P0CW21 52 aa11.88□□□□□ -0.51
CLN3-252ENST00000636907 PRADC1Q9BSG0 188 aa11.88□□□□□ -0.51
CLN3-252ENST00000636907 TSTD3H0UI37 97 aa11.87□□□□□ -0.51
CLN3-252ENST00000636907 DAZ4Q86SG3 579 aaKnown RBP11.87□□□□□ -0.51
CLN3-252ENST00000636907 TMEM141Q96I45 108 aa11.87□□□□□ -0.51
CLN3-252ENST00000636907 TIMM17AQ99595 171 aa11.87□□□□□ -0.51
CLN3-252ENST00000636907 DAZ3Q9NR90 486 aaKnown RBP11.87□□□□□ -0.51
CLN3-252ENST00000636907 hDV102S1A0JD36 115 aa11.87□□□□□ -0.51
CLN3-252ENST00000636907 A0A087WX48 190 aa11.86□□□□□ -0.51
CLN3-252ENST00000636907 TRAV12-1A0A0B4J245 112 aa11.86□□□□□ -0.51
CLN3-252ENST00000636907 CRYBA4P53673 196 aa11.86□□□□□ -0.51
CLN3-252ENST00000636907 SBSPONQ8IVN8 264 aa11.86□□□□□ -0.51
CLN3-252ENST00000636907 NBEAL1Q6ZS30 2694 aa11.85□□□□□ -0.51
CLN3-252ENST00000636907 LINC00694P0DN24 101 aa11.85□□□□□ -0.51
CLN3-252ENST00000636907 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.84□□□□□ -0.51
CLN3-252ENST00000636907 IGKV2-29A2NJV5 120 aaPredicted RBP11.84□□□□□ -0.51
CLN3-252ENST00000636907 NTM-AS1Q6ZSK4 140 aa11.84□□□□□ -0.51
CLN3-252ENST00000636907 OPRPNQ99935 248 aaPredicted RBP11.84□□□□□ -0.51
CLN3-252ENST00000636907 MRPL35Q9NZE8 188 aaKnown RBP11.84□□□□□ -0.51
CLN3-252ENST00000636907 PRO0255Q9UI72 69 aa11.84□□□□□ -0.51
CLN3-252ENST00000636907 ATP5G1P05496 136 aa11.84□□□□□ -0.51
CLN3-252ENST00000636907 GYPEP15421 78 aa11.84□□□□□ -0.51
CLN3-252ENST00000636907 ZC2HC1BQ5TFG8 222 aa11.84□□□□□ -0.51
CLN3-252ENST00000636907 MGAM2Q2M2H8 2515 aa11.83□□□□□ -0.51
CLN3-252ENST00000636907 TEX48A0A1B0GUV7 120 aa11.83□□□□□ -0.52
CLN3-252ENST00000636907 PRSS29PA6NIE9 313 aa11.83□□□□□ -0.52
CLN3-252ENST00000636907 HSBP1L1C9JCN9 74 aa11.83□□□□□ -0.52
CLN3-252ENST00000636907 DEFB121Q5J5C9 76 aa11.83□□□□□ -0.52
CLN3-252ENST00000636907 CHTOPQ9Y3Y2 248 aaKnown RBP11.83□□□□□ -0.52
CLN3-252ENST00000636907 F8VRH5 84 aa11.82□□□□□ -0.52
CLN3-252ENST00000636907 DPM2O94777 84 aa11.82□□□□□ -0.52
CLN3-252ENST00000636907 IGKCP01834 107 aa11.82□□□□□ -0.52
CLN3-252ENST00000636907 PMVKQ15126 192 aa11.82□□□□□ -0.52
CLN3-252ENST00000636907 C11orf68Q9H3H3 251 aaKnown RBP11.82□□□□□ -0.52
CLN3-252ENST00000636907 PYGO1Q9Y3Y4 419 aa11.82□□□□□ -0.52
CLN3-252ENST00000636907 IGLV4-3A0A075B6K6 122 aa11.81□□□□□ -0.52
CLN3-252ENST00000636907 C12orf74Q32Q52 190 aa11.81□□□□□ -0.52
CLN3-252ENST00000636907 CEMP1Q6PRD7 247 aaPredicted RBP11.81□□□□□ -0.52
CLN3-252ENST00000636907 FAM104AQ969W3 186 aa11.81□□□□□ -0.52
CLN3-252ENST00000636907 GTSF1LQ9H1H1 148 aa11.81□□□□□ -0.52
CLN3-252ENST00000636907 UBE2D4Q9Y2X8 147 aa11.81□□□□□ -0.52
CLN3-252ENST00000636907 PAX4O43316 350 aa11.81□□□□□ -0.52
CLN3-252ENST00000636907 VSIG2Q96IQ7 327 aa11.81□□□□□ -0.52
CLN3-252ENST00000636907 CST9LQ9H4G1 147 aa11.81□□□□□ -0.52
CLN3-252ENST00000636907 F5H768 121 aa11.8□□□□□ -0.52
CLN3-252ENST00000636907 IGLC3P0DOY3 106 aa11.8□□□□□ -0.52
CLN3-252ENST00000636907 DDTP30046 118 aa11.8□□□□□ -0.52
CLN3-252ENST00000636907 STPG4Q8N801 248 aa11.8□□□□□ -0.52
CLN3-252ENST00000636907 SPANXA1Q9NS26 97 aa11.8□□□□□ -0.52
CLN3-252ENST00000636907 A0A0J9YY99 117 aa11.79□□□□□ -0.52
CLN3-252ENST00000636907 HTN3P15516 51 aa11.79□□□□□ -0.52
CLN3-252ENST00000636907 ANKRD39Q53RE8 183 aa11.79□□□□□ -0.52
CLN3-252ENST00000636907 MRAPQ8TCY5 172 aa11.79□□□□□ -0.52
CLN3-252ENST00000636907 SPATA25Q9BR10 227 aa11.79□□□□□ -0.52
CLN3-252ENST00000636907 A0A0J9YWU9 116 aa11.78□□□□□ -0.52
CLN3-252ENST00000636907 LINC00587B1AMM8 73 aa11.78□□□□□ -0.52
CLN3-252ENST00000636907 PLNP26678 52 aa11.78□□□□□ -0.52
CLN3-252ENST00000636907 C14orf144Q96I85 54 aa11.78□□□□□ -0.52
CLN3-252ENST00000636907 TM2D3Q9BRN9 247 aa11.78□□□□□ -0.52
CLN3-252ENST00000636907 TRAV26-1A0A087WT03 109 aa11.78□□□□□ -0.52
CLN3-252ENST00000636907 ATP6V0E2Q8NHE4 81 aa11.78□□□□□ -0.52
CLN3-252ENST00000636907 MIEN1Q9BRT3 115 aa11.78□□□□□ -0.52
CLN3-252ENST00000636907 IGLV4-69A0A075B6H9 119 aa11.77□□□□□ -0.53
CLN3-252ENST00000636907 NPSP0C0P6 89 aa11.77□□□□□ -0.53
CLN3-252ENST00000636907 TCTAP57738 103 aa11.77□□□□□ -0.53
CLN3-252ENST00000636907 TMEM243Q9BU79 118 aa11.77□□□□□ -0.53
CLN3-252ENST00000636907 VCX2Q9H322 139 aa11.77□□□□□ -0.53
CLN3-252ENST00000636907 TENM3Q9P273 2699 aa11.76□□□□□ -0.53
CLN3-252ENST00000636907 TRBV25-1A0A075B6N4 114 aa11.76□□□□□ -0.53
CLN3-252ENST00000636907 RNASE13Q5GAN3 156 aaKnown RBP11.76□□□□□ -0.53
CLN3-252ENST00000636907 PAPPA-AS1Q5QFB9 102 aa11.76□□□□□ -0.53
CLN3-252ENST00000636907 Q6ZUT4 128 aa11.76□□□□□ -0.53
CLN3-252ENST00000636907 AMELXQ99217 191 aa11.76□□□□□ -0.53
CLN3-252ENST00000636907 TIMM21Q9BVV7 248 aa11.76□□□□□ -0.53
CLN3-252ENST00000636907 A0A096LPF7 62 aa11.75□□□□□ -0.53
CLN3-252ENST00000636907 TRBV6-8A0A0A6YYG3 113 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 127.1 ms