RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 DAD1P61803 113 aa7.49□□□□□ -1.21
CLN3-248ENST00000636355 FHL2Q14192 279 aa7.49□□□□□ -1.21
CLN3-248ENST00000636355 SCGB3A1Q96QR1 104 aa7.49□□□□□ -1.21
CLN3-248ENST00000636355 GTSF1LQ9H1H1 148 aa7.49□□□□□ -1.21
CLN3-248ENST00000636355 SPANXA1Q9NS26 97 aa7.49□□□□□ -1.21
CLN3-248ENST00000636355 PRO0255Q9UI72 69 aa7.49□□□□□ -1.21
CLN3-248ENST00000636355 PYGO1Q9Y3Y4 419 aa7.49□□□□□ -1.21
CLN3-248ENST00000636355 ATP5G1P05496 136 aa7.48□□□□□ -1.21
CLN3-248ENST00000636355 DEFB130BP0DP73 79 aa7.48□□□□□ -1.21
CLN3-248ENST00000636355 DEFB130AP0DP74 79 aa7.48□□□□□ -1.21
CLN3-248ENST00000636355 PLNP26678 52 aa7.48□□□□□ -1.21
CLN3-248ENST00000636355 PKIAP61925 76 aa7.48□□□□□ -1.21
CLN3-248ENST00000636355 Q6ZN92 141 aa7.48□□□□□ -1.21
CLN3-248ENST00000636355 SPATA25Q9BR10 227 aa7.48□□□□□ -1.21
CLN3-248ENST00000636355 TIMM21Q9BVV7 248 aa7.48□□□□□ -1.21
CLN3-248ENST00000636355 DNAH3Q8TD57 4116 aa7.48□□□□□ -1.21
CLN3-248ENST00000636355 TRAV9-2A0A087WT02 112 aa7.47□□□□□ -1.21
CLN3-248ENST00000636355 TRAV26-1A0A087WT03 109 aa7.47□□□□□ -1.21
CLN3-248ENST00000636355 IGIPA6NJ69 53 aa7.47□□□□□ -1.21
CLN3-248ENST00000636355 H7C423 109 aa7.47□□□□□ -1.21
CLN3-248ENST00000636355 ODF1Q14990 250 aa7.47□□□□□ -1.21
CLN3-248ENST00000636355 CDPF1Q6NVV7 123 aa7.47□□□□□ -1.21
CLN3-248ENST00000636355 NEGR1Q7Z3B1 354 aa7.47□□□□□ -1.21
CLN3-248ENST00000636355 SH2D6Q7Z4S9 175 aa7.47□□□□□ -1.21
CLN3-248ENST00000636355 TM2D3Q9BRN9 247 aa7.47□□□□□ -1.21
CLN3-248ENST00000636355 A0A087WX48 190 aa7.46□□□□□ -1.22
CLN3-248ENST00000636355 HSBP1L1C9JCN9 74 aa7.46□□□□□ -1.22
CLN3-248ENST00000636355 H3BNG1 76 aa7.46□□□□□ -1.22
CLN3-248ENST00000636355 MRPL52Q86TS9 123 aaKnown RBP7.46□□□□□ -1.22
CLN3-248ENST00000636355 ZNRF2Q8NHG8 242 aa7.46□□□□□ -1.22
CLN3-248ENST00000636355 HHLA3Q9XRX5 114 aa7.46□□□□□ -1.22
CLN3-248ENST00000636355 CSDC2Q9Y534 153 aaKnown RBP7.46□□□□□ -1.22
CLN3-248ENST00000636355 CMYA5Q8N3K9 4069 aa7.46□□□□□ -1.22
CLN3-248ENST00000636355 NBEAL2Q6ZNJ1 2754 aa7.45□□□□□ -1.22
CLN3-248ENST00000636355 F8VRH5 84 aa7.45□□□□□ -1.22
CLN3-248ENST00000636355 K7EIL1 84 aa7.45□□□□□ -1.22
CLN3-248ENST00000636355 DPM2O94777 84 aa7.45□□□□□ -1.22
CLN3-248ENST00000636355 PRSS1P07477 247 aa7.45□□□□□ -1.22
CLN3-248ENST00000636355 BAALCQ8WXS3 180 aa7.45□□□□□ -1.22
CLN3-248ENST00000636355 CHCHD7Q9BUK0 85 aa7.45□□□□□ -1.22
CLN3-248ENST00000636355 TRBV25-1A0A075B6N4 114 aa7.44□□□□□ -1.22
CLN3-248ENST00000636355 RPL39P62891 51 aaKnown RBP7.44□□□□□ -1.22
CLN3-248ENST00000636355 MRPS36P82909 103 aaKnown RBP7.44□□□□□ -1.22
CLN3-248ENST00000636355 PMVKQ15126 192 aa7.44□□□□□ -1.22
CLN3-248ENST00000636355 CELA1Q9UNI1 258 aa7.44□□□□□ -1.22
CLN3-248ENST00000636355 GAGE12JA6NER3 117 aa7.43□□□□□ -1.22
CLN3-248ENST00000636355 H0Y8G0 127 aa7.43□□□□□ -1.22
CLN3-248ENST00000636355 IGKCP01834 107 aa7.43□□□□□ -1.22
CLN3-248ENST00000636355 ZNF25P17030 456 aaPredicted RBP7.43□□□□□ -1.22
CLN3-248ENST00000636355 GAGE1Q13065 139 aa7.43□□□□□ -1.22
CLN3-248ENST00000636355 GAGE4Q13068 117 aa7.43□□□□□ -1.22
CLN3-248ENST00000636355 GAGE5Q13069 117 aa7.43□□□□□ -1.22
CLN3-248ENST00000636355 GAGE13Q4V321 117 aa7.43□□□□□ -1.22
CLN3-248ENST00000636355 ZNF664Q8N3J9 261 aa7.43□□□□□ -1.22
CLN3-248ENST00000636355 TMEM243Q9BU79 118 aa7.43□□□□□ -1.22
CLN3-248ENST00000636355 Q9UF83 564 aa7.43□□□□□ -1.22
CLN3-248ENST00000636355 UBE2D4Q9Y2X8 147 aa7.43□□□□□ -1.22
CLN3-248ENST00000636355 PAM16Q9Y3D7 125 aa7.43□□□□□ -1.22
CLN3-248ENST00000636355 IGLV4-3A0A075B6K6 122 aa7.42□□□□□ -1.22
CLN3-248ENST00000636355 PAX4O43316 350 aa7.42□□□□□ -1.22
CLN3-248ENST00000636355 SPATA45Q537H7 98 aa7.42□□□□□ -1.22
CLN3-248ENST00000636355 SBSPONQ8IVN8 264 aa7.42□□□□□ -1.22
CLN3-248ENST00000636355 PHLDA1Q8WV24 401 aaPredicted RBP7.42□□□□□ -1.22
CLN3-248ENST00000636355 CHTOPQ9Y3Y2 248 aaKnown RBP7.42□□□□□ -1.22
CLN3-248ENST00000636355 TRBV6-8A0A0A6YYG3 113 aa7.41□□□□□ -1.22
CLN3-248ENST00000636355 DEFB4AO15263 64 aa7.41□□□□□ -1.22
CLN3-248ENST00000636355 GYPEP15421 78 aa7.41□□□□□ -1.22
CLN3-248ENST00000636355 TIRAPP58753 221 aa7.41□□□□□ -1.22
CLN3-248ENST00000636355 ATP6V0E2Q8NHE4 81 aa7.41□□□□□ -1.22
CLN3-248ENST00000636355 AMELXQ99217 191 aa7.41□□□□□ -1.22
CLN3-248ENST00000636355 CST9LQ9H4G1 147 aa7.41□□□□□ -1.22
CLN3-248ENST00000636355 RETNQ9HD89 108 aa7.41□□□□□ -1.22
CLN3-248ENST00000636355 MRPL35Q9NZE8 188 aaKnown RBP7.41□□□□□ -1.22
CLN3-248ENST00000636355 IGHV3-38A0A0C4DH36 116 aa7.4□□□□□ -1.22
CLN3-248ENST00000636355 PRSS29PA6NIE9 313 aa7.4□□□□□ -1.22
CLN3-248ENST00000636355 UBE2L6O14933 153 aa7.4□□□□□ -1.22
CLN3-248ENST00000636355 MRPL23Q16540 153 aaKnown RBP7.4□□□□□ -1.22
CLN3-248ENST00000636355 NTM-AS1Q6ZSK4 140 aa7.4□□□□□ -1.22
CLN3-248ENST00000636355 NFE4Q86UQ8 179 aa7.4□□□□□ -1.22
CLN3-248ENST00000636355 ATOH7Q8N100 152 aa7.4□□□□□ -1.22
CLN3-248ENST00000636355 C2orf88Q9BSF0 95 aa7.4□□□□□ -1.22
CLN3-248ENST00000636355 UQCR10Q9UDW1 63 aa7.4□□□□□ -1.22
CLN3-248ENST00000636355 ICOSQ9Y6W8 199 aa7.4□□□□□ -1.22
CLN3-248ENST00000636355 TENM3Q9P273 2699 aa7.39□□□□□ -1.23
CLN3-248ENST00000636355 LOC100131303A0A0U1RQF7 123 aa7.39□□□□□ -1.23
CLN3-248ENST00000636355 F5H768 121 aa7.39□□□□□ -1.23
CLN3-248ENST00000636355 IGLC3P0DOY3 106 aa7.39□□□□□ -1.23
CLN3-248ENST00000636355 DDTP30046 118 aa7.39□□□□□ -1.23
CLN3-248ENST00000636355 C12orf74Q32Q52 190 aa7.39□□□□□ -1.23
CLN3-248ENST00000636355 VSIG2Q96IQ7 327 aa7.39□□□□□ -1.23
CLN3-248ENST00000636355 B9D2Q9BPU9 175 aa7.39□□□□□ -1.23
CLN3-248ENST00000636355 PMCHL2Q9BQD1 86 aa7.39□□□□□ -1.23
CLN3-248ENST00000636355 MIEN1Q9BRT3 115 aa7.39□□□□□ -1.23
CLN3-248ENST00000636355 VCX2Q9H322 139 aa7.39□□□□□ -1.23
CLN3-248ENST00000636355 IGLV4-69A0A075B6H9 119 aa7.38□□□□□ -1.23
CLN3-248ENST00000636355 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.38□□□□□ -1.23
CLN3-248ENST00000636355 IGKV2-29A2NJV5 120 aaPredicted RBP7.38□□□□□ -1.23
CLN3-248ENST00000636355 C11orf86A6NJI1 115 aa7.38□□□□□ -1.23
CLN3-248ENST00000636355 FGF6P10767 208 aa7.38□□□□□ -1.23
CLN3-248ENST00000636355 SEC11AP67812 179 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms