RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 NIT1Q86X76 327 aa12.25□□□□□ -0.45
CLN3-243ENST00000635973 Q8N3U1 123 aa12.25□□□□□ -0.45
CLN3-243ENST00000635973 DEFB104AQ8WTQ1 72 aa12.25□□□□□ -0.45
CLN3-243ENST00000635973 PPP1R17O96001 155 aa12.24□□□□□ -0.45
CLN3-243ENST00000635973 RPS10P46783 165 aaKnown RBP12.24□□□□□ -0.45
CLN3-243ENST00000635973 PKIAP61925 76 aa12.24□□□□□ -0.45
CLN3-243ENST00000635973 NTM-AS1Q6ZSK4 140 aa12.24□□□□□ -0.45
CLN3-243ENST00000635973 SVBPQ8N300 66 aa12.24□□□□□ -0.45
CLN3-243ENST00000635973 HSPG2P98160 4391 aa12.23□□□□□ -0.45
CLN3-243ENST00000635973 TRBV6-5A0A0K0K1A5 114 aa12.23□□□□□ -0.45
CLN3-243ENST00000635973 EREGO14944 169 aa12.23□□□□□ -0.45
CLN3-243ENST00000635973 CKS2P33552 79 aa12.23□□□□□ -0.45
CLN3-243ENST00000635973 MAPKAPK5-AS1Q8N8E1 139 aa12.23□□□□□ -0.45
CLN3-243ENST00000635973 SNAPINO95295 136 aa12.22□□□□□ -0.45
CLN3-243ENST00000635973 PMCHP20382 165 aa12.22□□□□□ -0.45
CLN3-243ENST00000635973 AMTP48728 403 aa12.22□□□□□ -0.45
CLN3-243ENST00000635973 IQCJQ1A5X6 159 aa12.22□□□□□ -0.45
CLN3-243ENST00000635973 NFE4Q86UQ8 179 aa12.22□□□□□ -0.45
CLN3-243ENST00000635973 TMEM243Q9BU79 118 aa12.22□□□□□ -0.45
CLN3-243ENST00000635973 CHCHD7Q9BUK0 85 aa12.22□□□□□ -0.45
CLN3-243ENST00000635973 TMEM242Q9NWH2 141 aa12.22□□□□□ -0.45
CLN3-243ENST00000635973 TRAV9-1A0A075B6T8 112 aa12.21□□□□□ -0.45
CLN3-243ENST00000635973 D6R8Y8 96 aa12.21□□□□□ -0.45
CLN3-243ENST00000635973 I3L3M4 83 aa12.21□□□□□ -0.45
CLN3-243ENST00000635973 UBE2L6O14933 153 aa12.21□□□□□ -0.45
CLN3-243ENST00000635973 APCSP02743 223 aa12.21□□□□□ -0.45
CLN3-243ENST00000635973 GAGE6Q13070 117 aa12.21□□□□□ -0.45
CLN3-243ENST00000635973 TMEM70Q9BUB7 260 aa12.21□□□□□ -0.45
CLN3-243ENST00000635973 Q9HAA7 133 aa12.21□□□□□ -0.45
CLN3-243ENST00000635973 IBA57-AS1B1ANH7 110 aa12.2□□□□□ -0.46
CLN3-243ENST00000635973 ELOBQ15370 118 aa12.2□□□□□ -0.46
CLN3-243ENST00000635973 SLC7A5P1Q8MH63 180 aa12.2□□□□□ -0.46
CLN3-243ENST00000635973 NRACQ8N912 160 aa12.2□□□□□ -0.46
CLN3-243ENST00000635973 PPBPP02775 128 aa12.19□□□□□ -0.46
CLN3-243ENST00000635973 SUMO2P61956 95 aaKnown RBP12.19□□□□□ -0.46
CLN3-243ENST00000635973 MPV17L2Q567V2 206 aa12.19□□□□□ -0.46
CLN3-243ENST00000635973 LRP1BQ9NZR2 4599 aa12.19□□□□□ -0.46
CLN3-243ENST00000635973 KRTAP10-2P60368 255 aa12.18□□□□□ -0.46
CLN3-243ENST00000635973 LAGE3Q14657 143 aa12.18□□□□□ -0.46
CLN3-243ENST00000635973 ORMDL3Q8N138 153 aa12.18□□□□□ -0.46
CLN3-243ENST00000635973 KLK12Q9UKR0 248 aa12.18□□□□□ -0.46
CLN3-243ENST00000635973 VCYO14598 125 aa12.17□□□□□ -0.46
CLN3-243ENST00000635973 TNFRSF6BO95407 300 aa12.17□□□□□ -0.46
CLN3-243ENST00000635973 ANGP03950 147 aaKnown RBP12.17□□□□□ -0.46
CLN3-243ENST00000635973 ATRAIDQ6UW56 229 aa12.17□□□□□ -0.46
CLN3-243ENST00000635973 TRAV8-3A0A0A6YYJ7 113 aa12.16□□□□□ -0.46
CLN3-243ENST00000635973 TRBV27A0A0K0K1C4 114 aa12.16□□□□□ -0.46
CLN3-243ENST00000635973 PSCAO43653 123 aa12.16□□□□□ -0.46
CLN3-243ENST00000635973 CRPP02741 224 aa12.16□□□□□ -0.46
CLN3-243ENST00000635973 FCER1GP30273 86 aa12.16□□□□□ -0.46
CLN3-243ENST00000635973 POLR2KP53803 58 aaKnown RBP12.16□□□□□ -0.46
CLN3-243ENST00000635973 TMEM136Q6ZRR5 245 aa12.16□□□□□ -0.46
CLN3-243ENST00000635973 Q8N976 141 aa12.16□□□□□ -0.46
CLN3-243ENST00000635973 PRELID3AQ96N28 172 aa12.16□□□□□ -0.46
CLN3-243ENST00000635973 KIR2DL4Q99706 377 aa12.16□□□□□ -0.46
CLN3-243ENST00000635973 C20orf78Q9BR46 151 aa12.16□□□□□ -0.46
CLN3-243ENST00000635973 PGPEP1Q9NXJ5 209 aa12.16□□□□□ -0.46
CLN3-243ENST00000635973 NPYP01303 97 aa12.15□□□□□ -0.46
CLN3-243ENST00000635973 RBX1P62877 108 aa12.15□□□□□ -0.46
CLN3-243ENST00000635973 Q6ZRN7 208 aaPredicted RBP12.15□□□□□ -0.46
CLN3-243ENST00000635973 UBE2WQ96B02 151 aa12.15□□□□□ -0.46
CLN3-243ENST00000635973 TRBV24-1A0A075B6N3 115 aa12.14□□□□□ -0.47
CLN3-243ENST00000635973 PHOX2AO14813 284 aa12.14□□□□□ -0.47
CLN3-243ENST00000635973 TSHBP01222 138 aa12.14□□□□□ -0.47
CLN3-243ENST00000635973 AMMECR1LQ6DCA0 310 aa12.14□□□□□ -0.47
CLN3-243ENST00000635973 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.13□□□□□ -0.47
CLN3-243ENST00000635973 IGKV2-29A2NJV5 120 aaPredicted RBP12.13□□□□□ -0.47
CLN3-243ENST00000635973 HLA-DQA1P01909 254 aa12.13□□□□□ -0.47
CLN3-243ENST00000635973 RMI2Q96E14 147 aa12.13□□□□□ -0.47
CLN3-243ENST00000635973 SMIM2Q9BVW6 85 aa12.13□□□□□ -0.47
CLN3-243ENST00000635973 TM2D2Q9BX73 214 aa12.13□□□□□ -0.47
CLN3-243ENST00000635973 Q0VG73 95 aa12.12□□□□□ -0.47
CLN3-243ENST00000635973 COX19Q49B96 90 aa12.12□□□□□ -0.47
CLN3-243ENST00000635973 RNASEKQ6P5S7 137 aaKnown RBP12.12□□□□□ -0.47
CLN3-243ENST00000635973 CLPSL2Q6UWE3 100 aa12.12□□□□□ -0.47
CLN3-243ENST00000635973 Q8N1X5 172 aa12.12□□□□□ -0.47
CLN3-243ENST00000635973 LAMTOR2Q9Y2Q5 125 aa12.12□□□□□ -0.47
CLN3-243ENST00000635973 H7C423 109 aa12.11□□□□□ -0.47
CLN3-243ENST00000635973 RPL32P62910 135 aaKnown RBP12.11□□□□□ -0.47
CLN3-243ENST00000635973 CDPF1Q6NVV7 123 aa12.11□□□□□ -0.47
CLN3-243ENST00000635973 DNAH5Q8TE73 4624 aa12.1□□□□□ -0.47
CLN3-243ENST00000635973 IGKV2D-24A0A075B6R9 120 aa12.1□□□□□ -0.47
CLN3-243ENST00000635973 TCAPO15273 167 aa12.1□□□□□ -0.47
CLN3-243ENST00000635973 LINC00269Q8N2A0 174 aa12.1□□□□□ -0.47
CLN3-243ENST00000635973 GNB1LQ9BYB4 327 aa12.1□□□□□ -0.47
CLN3-243ENST00000635973 MAP1LC3AQ9H492 121 aa12.1□□□□□ -0.47
CLN3-243ENST00000635973 APOBP04114 4563 aaKnown RBP12.1□□□□□ -0.47
CLN3-243ENST00000635973 IGLV4-60A0A075B6I1 120 aa12.09□□□□□ -0.47
CLN3-243ENST00000635973 TGIF2-C20orf24A0A0A6YYL0 155 aa12.09□□□□□ -0.47
CLN3-243ENST00000635973 A0A1B0GUV1 79 aa12.09□□□□□ -0.47
CLN3-243ENST00000635973 MT-ND6P03923 174 aa12.09□□□□□ -0.47
CLN3-243ENST00000635973 FGF6P10767 208 aa12.09□□□□□ -0.47
CLN3-243ENST00000635973 C20orf203Q8NBC4 194 aa12.09□□□□□ -0.47
CLN3-243ENST00000635973 C1orf43Q9BWL3 253 aa12.09□□□□□ -0.47
CLN3-243ENST00000635973 COX11Q9Y6N1 276 aa12.09□□□□□ -0.47
CLN3-243ENST00000635973 A0A087WTM6 91 aa12.08□□□□□ -0.48
CLN3-243ENST00000635973 LOC389332A0A1B0GUA5 103 aa12.08□□□□□ -0.48
CLN3-243ENST00000635973 ESDP10768 282 aa12.08□□□□□ -0.48
CLN3-243ENST00000635973 KIAA1644Q3SXP7 199 aa12.08□□□□□ -0.48
CLN3-243ENST00000635973 TMEM101Q96IK0 257 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 100.3 ms