RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 POLQO75417 2590 aa9.28□□□□□ -0.92
LINC00540-203ENST00000631321 MXRA5Q9NR99 2828 aa9.28□□□□□ -0.92
LINC00540-203ENST00000631321 A0A0J9YXY3 114 aa9.27□□□□□ -0.92
LINC00540-203ENST00000631321 TCL1BO95988 128 aa9.27□□□□□ -0.92
LINC00540-203ENST00000631321 PRM2P04554 102 aa9.27□□□□□ -0.92
LINC00540-203ENST00000631321 IGHV3-30-3P0DP02 117 aa9.27□□□□□ -0.92
LINC00540-203ENST00000631321 INSL3P51460 131 aa9.27□□□□□ -0.92
LINC00540-203ENST00000631321 KRTAP10-9P60411 292 aa9.27□□□□□ -0.92
LINC00540-203ENST00000631321 FOXI1Q12951 378 aa9.27□□□□□ -0.92
LINC00540-203ENST00000631321 TMEM263Q8WUH6 116 aaKnown RBP9.27□□□□□ -0.92
LINC00540-203ENST00000631321 IGHV3-53P01767 116 aa9.27□□□□□ -0.93
LINC00540-203ENST00000631321 IGHV3-33P01772 117 aa9.27□□□□□ -0.93
LINC00540-203ENST00000631321 SFTA2Q6UW10 78 aa9.27□□□□□ -0.93
LINC00540-203ENST00000631321 RAX2Q96IS3 184 aa9.27□□□□□ -0.93
LINC00540-203ENST00000631321 Q9UF83 564 aa9.27□□□□□ -0.93
LINC00540-203ENST00000631321 UBE2D4Q9Y2X8 147 aa9.27□□□□□ -0.93
LINC00540-203ENST00000631321 CR1P17927 2039 aa9.27□□□□□ -0.93
LINC00540-203ENST00000631321 IGHV3-64A0A075B6Q5 118 aa9.26□□□□□ -0.93
LINC00540-203ENST00000631321 TINCRA0A1B0GVN0 87 aa9.26□□□□□ -0.93
LINC00540-203ENST00000631321 PRB1P04280 392 aa9.26□□□□□ -0.93
LINC00540-203ENST00000631321 AZU1P20160 251 aa9.26□□□□□ -0.93
LINC00540-203ENST00000631321 MUSTN1Q8IVN3 82 aa9.26□□□□□ -0.93
LINC00540-203ENST00000631321 DYNLRB2Q8TF09 96 aa9.26□□□□□ -0.93
LINC00540-203ENST00000631321 TIMM21Q9BVV7 248 aa9.26□□□□□ -0.93
LINC00540-203ENST00000631321 RS1O15537 224 aa9.26□□□□□ -0.93
LINC00540-203ENST00000631321 INSP01308 110 aa9.26□□□□□ -0.93
LINC00540-203ENST00000631321 TMEM86BQ8N661 226 aa9.26□□□□□ -0.93
LINC00540-203ENST00000631321 LINC01587Q99440 93 aa9.26□□□□□ -0.93
LINC00540-203ENST00000631321 LITAFQ99732 161 aa9.26□□□□□ -0.93
LINC00540-203ENST00000631321 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.25□□□□□ -0.93
LINC00540-203ENST00000631321 IGHV1-58A0A0C4DH39 117 aa9.25□□□□□ -0.93
LINC00540-203ENST00000631321 CEMP1Q6PRD7 247 aaPredicted RBP9.25□□□□□ -0.93
LINC00540-203ENST00000631321 GTSF1LQ9H1H1 148 aa9.25□□□□□ -0.93
LINC00540-203ENST00000631321 PTPN13Q12923 2485 aa9.25□□□□□ -0.93
LINC00540-203ENST00000631321 FAM208BQ5VWN6 2430 aa9.25□□□□□ -0.93
LINC00540-203ENST00000631321 LRRK2Q5S007 2527 aa9.24□□□□□ -0.93
LINC00540-203ENST00000631321 ZNF462Q96JM2 2506 aa9.24□□□□□ -0.93
LINC00540-203ENST00000631321 M0QXV9 152 aa9.24□□□□□ -0.93
LINC00540-203ENST00000631321 TEN1Q86WV5 123 aa9.24□□□□□ -0.93
LINC00540-203ENST00000631321 ZNF418Q8TF45 676 aaPredicted RBP9.24□□□□□ -0.93
LINC00540-203ENST00000631321 VSIG2Q96IQ7 327 aa9.24□□□□□ -0.93
LINC00540-203ENST00000631321 BBC3Q96PG8 261 aaPredicted RBP9.24□□□□□ -0.93
LINC00540-203ENST00000631321 ERG28Q9UKR5 140 aa9.24□□□□□ -0.93
LINC00540-203ENST00000631321 NAV2Q8IVL1 2488 aa9.24□□□□□ -0.93
LINC00540-203ENST00000631321 UBR5O95071 2799 aaPredicted RBP9.23□□□□□ -0.93
LINC00540-203ENST00000631321 TRAV25A0A0B4J276 109 aa9.23□□□□□ -0.93
LINC00540-203ENST00000631321 KRTAP1-3Q8IUG1 177 aa9.23□□□□□ -0.93
LINC00540-203ENST00000631321 Q96MF0 132 aa9.23□□□□□ -0.93
LINC00540-203ENST00000631321 SPANXDQ9BXN6 97 aa9.23□□□□□ -0.93
LINC00540-203ENST00000631321 SPANXCQ9NY87 97 aa9.23□□□□□ -0.93
LINC00540-203ENST00000631321 NACAE9PAV3 2078 aa9.23□□□□□ -0.93
LINC00540-203ENST00000631321 TRAV8-3A0A0A6YYJ7 113 aa9.23□□□□□ -0.93
LINC00540-203ENST00000631321 SCGB1C2P0DMR2 95 aa9.23□□□□□ -0.93
LINC00540-203ENST00000631321 KHDC1LQ5JSQ8 128 aa9.23□□□□□ -0.93
LINC00540-203ENST00000631321 PPDPFLQ8WWR9 84 aa9.23□□□□□ -0.93
LINC00540-203ENST00000631321 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.22□□□□□ -0.93
LINC00540-203ENST00000631321 IGKV2-29A2NJV5 120 aaPredicted RBP9.22□□□□□ -0.93
LINC00540-203ENST00000631321 RNASE13Q5GAN3 156 aaKnown RBP9.22□□□□□ -0.93
LINC00540-203ENST00000631321 Q6ZUT4 128 aa9.22□□□□□ -0.93
LINC00540-203ENST00000631321 IL17DQ8TAD2 202 aa9.22□□□□□ -0.93
LINC00540-203ENST00000631321 ODF3L2Q3SX64 289 aa9.22□□□□□ -0.93
LINC00540-203ENST00000631321 ZNF843Q8N446 348 aa9.22□□□□□ -0.93
LINC00540-203ENST00000631321 CARD19Q96LW7 228 aa9.22□□□□□ -0.93
LINC00540-203ENST00000631321 NDUFA12Q9UI09 145 aa9.22□□□□□ -0.93
LINC00540-203ENST00000631321 Q6ZSV7 163 aa9.21□□□□□ -0.93
LINC00540-203ENST00000631321 AKAP9Q99996 3911 aa9.21□□□□□ -0.93
LINC00540-203ENST00000631321 IGLV5-45A0A087WSX0 123 aa9.21□□□□□ -0.94
LINC00540-203ENST00000631321 ADARB2-AS1A8MUL3 147 aa9.21□□□□□ -0.94
LINC00540-203ENST00000631321 TIRAPP58753 221 aa9.21□□□□□ -0.94
LINC00540-203ENST00000631321 SMAGPQ0VAQ4 97 aa9.21□□□□□ -0.94
LINC00540-203ENST00000631321 FHL3Q13643 280 aa9.21□□□□□ -0.94
LINC00540-203ENST00000631321 RNF183Q96D59 192 aa9.21□□□□□ -0.94
LINC00540-203ENST00000631321 CDIP1Q9H305 208 aa9.21□□□□□ -0.94
LINC00540-203ENST00000631321 USP24Q9UPU5 2620 aa9.2□□□□□ -0.94
LINC00540-203ENST00000631321 ZFAND6Q6FIF0 208 aa9.2□□□□□ -0.94
LINC00540-203ENST00000631321 ZFYVE26Q68DK2 2539 aa9.2□□□□□ -0.94
LINC00540-203ENST00000631321 TIMM17BO60830 172 aa9.2□□□□□ -0.94
LINC00540-203ENST00000631321 MIAQ16674 131 aa9.2□□□□□ -0.94
LINC00540-203ENST00000631321 ADAMTSL4-AS1Q5T5F5 129 aa9.2□□□□□ -0.94
LINC00540-203ENST00000631321 C1orf158Q8N1D5 194 aa9.2□□□□□ -0.94
LINC00540-203ENST00000631321 LINC01600Q96MT4 127 aa9.2□□□□□ -0.94
LINC00540-203ENST00000631321 CENPEQ02224 2701 aa9.19□□□□□ -0.94
LINC00540-203ENST00000631321 MYO9AB2RTY4 2548 aa9.19□□□□□ -0.94
LINC00540-203ENST00000631321 IGHV3-38A0A0C4DH36 116 aa9.19□□□□□ -0.94
LINC00540-203ENST00000631321 TRBV30A0A0K0K1B3 111 aa9.19□□□□□ -0.94
LINC00540-203ENST00000631321 SPINK8P0C7L1 97 aa9.19□□□□□ -0.94
LINC00540-203ENST00000631321 XCL2Q9UBD3 114 aa9.19□□□□□ -0.94
LINC00540-203ENST00000631321 TEX29Q8N6K0 151 aa9.19□□□□□ -0.94
LINC00540-203ENST00000631321 GEMIN7Q9H840 131 aaKnown RBP9.19□□□□□ -0.94
LINC00540-203ENST00000631321 STHQ8IWL8 128 aa9.18□□□□□ -0.94
LINC00540-203ENST00000631321 ANKRD29Q8N6D5 301 aa9.18□□□□□ -0.94
LINC00540-203ENST00000631321 TEX15Q9BXT5 2789 aa9.18□□□□□ -0.94
LINC00540-203ENST00000631321 SLC25A20O43772 301 aa9.17□□□□□ -0.94
LINC00540-203ENST00000631321 HIST2H2BDQ6DRA6 164 aa9.17□□□□□ -0.94
LINC00540-203ENST00000631321 FAM19A3Q7Z5A8 133 aa9.17□□□□□ -0.94
LINC00540-203ENST00000631321 ATXN8Q156A1 80 aa9.17□□□□□ -0.94
LINC00540-203ENST00000631321 ABCA12Q86UK0 2595 aa9.17□□□□□ -0.94
LINC00540-203ENST00000631321 TRBV10-1A0A0K0K1A3 114 aa9.16□□□□□ -0.94
LINC00540-203ENST00000631321 DNAJC9-AS1A6NH13 148 aa9.16□□□□□ -0.94
LINC00540-203ENST00000631321 A8MZ25 164 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 115 ms