RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 NFE4Q86UQ8 179 aa12.22□□□□□ -0.45
CLN3-239ENST00000628023 TMEM243Q9BU79 118 aa12.22□□□□□ -0.45
CLN3-239ENST00000628023 CHCHD7Q9BUK0 85 aa12.22□□□□□ -0.45
CLN3-239ENST00000628023 TMEM242Q9NWH2 141 aa12.22□□□□□ -0.45
CLN3-239ENST00000628023 FAT2Q9NYQ8 4349 aa12.22□□□□□ -0.45
CLN3-239ENST00000628023 DNAH17Q9UFH2 4485 aa12.21□□□□□ -0.45
CLN3-239ENST00000628023 TRAV9-1A0A075B6T8 112 aa12.21□□□□□ -0.45
CLN3-239ENST00000628023 D6R8Y8 96 aa12.21□□□□□ -0.45
CLN3-239ENST00000628023 I3L3M4 83 aa12.21□□□□□ -0.45
CLN3-239ENST00000628023 UBE2L6O14933 153 aa12.21□□□□□ -0.45
CLN3-239ENST00000628023 APCSP02743 223 aa12.21□□□□□ -0.45
CLN3-239ENST00000628023 GAGE6Q13070 117 aa12.21□□□□□ -0.45
CLN3-239ENST00000628023 TMEM70Q9BUB7 260 aa12.21□□□□□ -0.45
CLN3-239ENST00000628023 Q9HAA7 133 aa12.21□□□□□ -0.45
CLN3-239ENST00000628023 DNAH2Q9P225 4427 aa12.2□□□□□ -0.46
CLN3-239ENST00000628023 IBA57-AS1B1ANH7 110 aa12.2□□□□□ -0.46
CLN3-239ENST00000628023 ELOBQ15370 118 aa12.2□□□□□ -0.46
CLN3-239ENST00000628023 SLC7A5P1Q8MH63 180 aa12.2□□□□□ -0.46
CLN3-239ENST00000628023 NRACQ8N912 160 aa12.2□□□□□ -0.46
CLN3-239ENST00000628023 PCLOQ9Y6V0 5065 aa12.19□□□□□ -0.46
CLN3-239ENST00000628023 PPBPP02775 128 aa12.19□□□□□ -0.46
CLN3-239ENST00000628023 SUMO2P61956 95 aaKnown RBP12.19□□□□□ -0.46
CLN3-239ENST00000628023 MPV17L2Q567V2 206 aa12.19□□□□□ -0.46
CLN3-239ENST00000628023 LAGE3Q14657 143 aa12.18□□□□□ -0.46
CLN3-239ENST00000628023 ORMDL3Q8N138 153 aa12.18□□□□□ -0.46
CLN3-239ENST00000628023 KLK12Q9UKR0 248 aa12.18□□□□□ -0.46
CLN3-239ENST00000628023 VCYO14598 125 aa12.17□□□□□ -0.46
CLN3-239ENST00000628023 TNFRSF6BO95407 300 aa12.17□□□□□ -0.46
CLN3-239ENST00000628023 ANGP03950 147 aaKnown RBP12.17□□□□□ -0.46
CLN3-239ENST00000628023 ATRAIDQ6UW56 229 aa12.17□□□□□ -0.46
CLN3-239ENST00000628023 TRAV8-3A0A0A6YYJ7 113 aa12.16□□□□□ -0.46
CLN3-239ENST00000628023 TRBV27A0A0K0K1C4 114 aa12.16□□□□□ -0.46
CLN3-239ENST00000628023 C16orf90A8MZG2 172 aa12.16□□□□□ -0.46
CLN3-239ENST00000628023 PSCAO43653 123 aa12.16□□□□□ -0.46
CLN3-239ENST00000628023 CRPP02741 224 aa12.16□□□□□ -0.46
CLN3-239ENST00000628023 FCER1GP30273 86 aa12.16□□□□□ -0.46
CLN3-239ENST00000628023 POLR2KP53803 58 aaKnown RBP12.16□□□□□ -0.46
CLN3-239ENST00000628023 TNP2Q05952 138 aa12.16□□□□□ -0.46
CLN3-239ENST00000628023 TMEM136Q6ZRR5 245 aa12.16□□□□□ -0.46
CLN3-239ENST00000628023 Q8N976 141 aa12.16□□□□□ -0.46
CLN3-239ENST00000628023 PRELID3AQ96N28 172 aa12.16□□□□□ -0.46
CLN3-239ENST00000628023 KIR2DL4Q99706 377 aa12.16□□□□□ -0.46
CLN3-239ENST00000628023 C20orf78Q9BR46 151 aa12.16□□□□□ -0.46
CLN3-239ENST00000628023 NPYP01303 97 aa12.15□□□□□ -0.46
CLN3-239ENST00000628023 RBX1P62877 108 aa12.15□□□□□ -0.46
CLN3-239ENST00000628023 UBE2WQ96B02 151 aa12.15□□□□□ -0.46
CLN3-239ENST00000628023 TRBV24-1A0A075B6N3 115 aa12.14□□□□□ -0.47
CLN3-239ENST00000628023 PHOX2AO14813 284 aa12.14□□□□□ -0.47
CLN3-239ENST00000628023 TSHBP01222 138 aa12.14□□□□□ -0.47
CLN3-239ENST00000628023 AMMECR1LQ6DCA0 310 aa12.14□□□□□ -0.47
CLN3-239ENST00000628023 Q6ZRN7 208 aaPredicted RBP12.14□□□□□ -0.47
CLN3-239ENST00000628023 PKD1P98161 4303 aa12.14□□□□□ -0.47
CLN3-239ENST00000628023 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.13□□□□□ -0.47
CLN3-239ENST00000628023 IGKV2-29A2NJV5 120 aaPredicted RBP12.13□□□□□ -0.47
CLN3-239ENST00000628023 HLA-DQA1P01909 254 aa12.13□□□□□ -0.47
CLN3-239ENST00000628023 RMI2Q96E14 147 aa12.13□□□□□ -0.47
CLN3-239ENST00000628023 SMIM2Q9BVW6 85 aa12.13□□□□□ -0.47
CLN3-239ENST00000628023 TM2D2Q9BX73 214 aa12.13□□□□□ -0.47
CLN3-239ENST00000628023 Q0VG73 95 aa12.12□□□□□ -0.47
CLN3-239ENST00000628023 COX19Q49B96 90 aa12.12□□□□□ -0.47
CLN3-239ENST00000628023 RNASEKQ6P5S7 137 aaKnown RBP12.12□□□□□ -0.47
CLN3-239ENST00000628023 CLPSL2Q6UWE3 100 aa12.12□□□□□ -0.47
CLN3-239ENST00000628023 LAMTOR2Q9Y2Q5 125 aa12.12□□□□□ -0.47
CLN3-239ENST00000628023 H7C423 109 aa12.11□□□□□ -0.47
CLN3-239ENST00000628023 RPL32P62910 135 aaKnown RBP12.11□□□□□ -0.47
CLN3-239ENST00000628023 IGKV2D-24A0A075B6R9 120 aa12.1□□□□□ -0.47
CLN3-239ENST00000628023 TCAPO15273 167 aa12.1□□□□□ -0.47
CLN3-239ENST00000628023 CDK2AP2O75956 126 aa12.1□□□□□ -0.47
CLN3-239ENST00000628023 LINC00269Q8N2A0 174 aa12.1□□□□□ -0.47
CLN3-239ENST00000628023 GNB1LQ9BYB4 327 aa12.1□□□□□ -0.47
CLN3-239ENST00000628023 MAP1LC3AQ9H492 121 aa12.1□□□□□ -0.47
CLN3-239ENST00000628023 IGLV4-60A0A075B6I1 120 aa12.09□□□□□ -0.47
CLN3-239ENST00000628023 TGIF2-C20orf24A0A0A6YYL0 155 aa12.09□□□□□ -0.47
CLN3-239ENST00000628023 A0A1B0GUV1 79 aa12.09□□□□□ -0.47
CLN3-239ENST00000628023 EREGO14944 169 aa12.09□□□□□ -0.47
CLN3-239ENST00000628023 MT-ND6P03923 174 aa12.09□□□□□ -0.47
CLN3-239ENST00000628023 FGF6P10767 208 aa12.09□□□□□ -0.47
CLN3-239ENST00000628023 C20orf203Q8NBC4 194 aa12.09□□□□□ -0.47
CLN3-239ENST00000628023 C1orf43Q9BWL3 253 aa12.09□□□□□ -0.47
CLN3-239ENST00000628023 COX11Q9Y6N1 276 aa12.09□□□□□ -0.47
CLN3-239ENST00000628023 DNAH11Q96DT5 4516 aa12.08□□□□□ -0.48
CLN3-239ENST00000628023 LOC389332A0A1B0GUA5 103 aa12.08□□□□□ -0.48
CLN3-239ENST00000628023 ESDP10768 282 aa12.08□□□□□ -0.48
CLN3-239ENST00000628023 KIAA1644Q3SXP7 199 aa12.08□□□□□ -0.48
CLN3-239ENST00000628023 TMEM101Q96IK0 257 aa12.08□□□□□ -0.48
CLN3-239ENST00000628023 ZNF25P17030 456 aaPredicted RBP12.07□□□□□ -0.48
CLN3-239ENST00000628023 RAB5AP20339 215 aa12.07□□□□□ -0.48
CLN3-239ENST00000628023 REG3AQ06141 175 aa12.07□□□□□ -0.48
CLN3-239ENST00000628023 SMAGPQ0VAQ4 97 aa12.07□□□□□ -0.48
CLN3-239ENST00000628023 MIAQ16674 131 aa12.07□□□□□ -0.48
CLN3-239ENST00000628023 ENHOQ6UWT2 76 aa12.07□□□□□ -0.48
CLN3-239ENST00000628023 SPATA12Q7Z6I5 190 aa12.06□□□□□ -0.48
CLN3-239ENST00000628023 OR5A1Q8NGJ0 315 aa12.06□□□□□ -0.48
CLN3-239ENST00000628023 TMEM18Q96B42 140 aa12.06□□□□□ -0.48
CLN3-239ENST00000628023 MRPL18Q9H0U6 180 aaKnown RBP12.06□□□□□ -0.48
CLN3-239ENST00000628023 DYNC1H1Q14204 4646 aaKnown RBP12.05□□□□□ -0.48
CLN3-239ENST00000628023 A0A087WTM6 91 aa12.05□□□□□ -0.48
CLN3-239ENST00000628023 IGKV3OR2-268A0A0C4DH90 116 aa12.05□□□□□ -0.48
CLN3-239ENST00000628023 FABP9Q0Z7S8 132 aa12.05□□□□□ -0.48
CLN3-239ENST00000628023 SMCO4Q9NRQ5 59 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms