RNA–Protein interactions for RNA: ENST00000621990.4

PDPN-212, Transcript of podoplanin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PDPN, Length 2,738 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-212ENST00000621990 IL17DQ8TAD2 202 aa6.85□□□□□ -1.31
PDPN-212ENST00000621990 VCX2Q9H322 139 aa6.85□□□□□ -1.31
PDPN-212ENST00000621990 IGHV3-73A0A0B4J1V6 119 aa6.84□□□□□ -1.31
PDPN-212ENST00000621990 F8W1H4 67 aa6.84□□□□□ -1.31
PDPN-212ENST00000621990 CD28P10747 220 aa6.84□□□□□ -1.31
PDPN-212ENST00000621990 SRSF9Q13242 221 aaKnown RBP eCLIP6.84□□□□□ -1.31
PDPN-212ENST00000621990 DNAJC30Q96LL9 226 aa6.84□□□□□ -1.31
PDPN-212ENST00000621990 ESM1Q9NQ30 184 aa6.84□□□□□ -1.31
PDPN-212ENST00000621990 TNFRSF18Q9Y5U5 241 aa6.84□□□□□ -1.31
PDPN-212ENST00000621990 RS1O15537 224 aa6.84□□□□□ -1.32
PDPN-212ENST00000621990 MRPS36P82909 103 aaKnown RBP6.84□□□□□ -1.32
PDPN-212ENST00000621990 LINC01587Q99440 93 aa6.84□□□□□ -1.32
PDPN-212ENST00000621990 CHCHD7Q9BUK0 85 aa6.84□□□□□ -1.32
PDPN-212ENST00000621990 TLN2Q9Y4G6 2542 aa6.83□□□□□ -1.32
PDPN-212ENST00000621990 FLNAP21333 2647 aaKnown RBP6.83□□□□□ -1.32
PDPN-212ENST00000621990 Q9UF83 564 aa6.83□□□□□ -1.32
PDPN-212ENST00000621990 LGALS3P17931 250 aaKnown RBP6.83□□□□□ -1.32
PDPN-212ENST00000621990 KRTAP1-1Q07627 177 aa6.83□□□□□ -1.32
PDPN-212ENST00000621990 VPS25Q9BRG1 176 aa6.83□□□□□ -1.32
PDPN-212ENST00000621990 SPANXA1Q9NS26 97 aa6.83□□□□□ -1.32
PDPN-212ENST00000621990 PRO0461Q9UI25 63 aa6.83□□□□□ -1.32
PDPN-212ENST00000621990 A0A0J9YXV3 536 aa6.82□□□□□ -1.32
PDPN-212ENST00000621990 CCL24O00175 119 aa6.82□□□□□ -1.32
PDPN-212ENST00000621990 HIST2H2BDQ6DRA6 164 aa6.82□□□□□ -1.32
PDPN-212ENST00000621990 C16orf95Q9H693 158 aa6.82□□□□□ -1.32
PDPN-212ENST00000621990 PGPEP1Q9NXJ5 209 aa6.82□□□□□ -1.32
PDPN-212ENST00000621990 UBE2D4Q9Y2X8 147 aa6.82□□□□□ -1.32
PDPN-212ENST00000621990 NDUFA11Q86Y39 141 aa6.82□□□□□ -1.32
PDPN-212ENST00000621990 H3BMG7 143 aa6.81□□□□□ -1.32
PDPN-212ENST00000621990 TSPAN13O95857 204 aa6.81□□□□□ -1.32
PDPN-212ENST00000621990 UBE2D3P61077 147 aa6.81□□□□□ -1.32
PDPN-212ENST00000621990 UBE2D2P62837 147 aa6.81□□□□□ -1.32
PDPN-212ENST00000621990 C1orf158Q8N1D5 194 aa6.81□□□□□ -1.32
PDPN-212ENST00000621990 MRPL16Q9NX20 251 aaKnown RBP6.81□□□□□ -1.32
PDPN-212ENST00000621990 TINCRA0A1B0GVN0 87 aa6.8□□□□□ -1.32
PDPN-212ENST00000621990 RNASE1P07998 156 aaKnown RBP6.8□□□□□ -1.32
PDPN-212ENST00000621990 CFC1BP0CG36 223 aa6.8□□□□□ -1.32
PDPN-212ENST00000621990 CFC1P0CG37 223 aa6.8□□□□□ -1.32
PDPN-212ENST00000621990 AZU1P20160 251 aa6.8□□□□□ -1.32
PDPN-212ENST00000621990 STHQ8IWL8 128 aa6.8□□□□□ -1.32
PDPN-212ENST00000621990 TSSC4Q9Y5U2 329 aaPredicted RBP6.8□□□□□ -1.32
PDPN-212ENST00000621990 XCL2Q9UBD3 114 aa6.8□□□□□ -1.32
PDPN-212ENST00000621990 NIPBLQ6KC79 2804 aaeCLIP6.8□□□□□ -1.32
PDPN-212ENST00000621990 SONP18583 2426 aaKnown RBP6.79□□□□□ -1.32
PDPN-212ENST00000621990 TEX48A0A1B0GUV7 120 aa6.79□□□□□ -1.32
PDPN-212ENST00000621990 IGHV3-30-3P0DP02 117 aa6.79□□□□□ -1.32
PDPN-212ENST00000621990 WFDC2Q14508 124 aa6.79□□□□□ -1.32
PDPN-212ENST00000621990 CEMP1Q6PRD7 247 aaPredicted RBP6.79□□□□□ -1.32
PDPN-212ENST00000621990 C10orf126Q8N4M7 172 aa6.79□□□□□ -1.32
PDPN-212ENST00000621990 CITED2Q99967 270 aaPredicted RBP6.79□□□□□ -1.32
PDPN-212ENST00000621990 GAGE13Q4V321 117 aa6.79□□□□□ -1.32
PDPN-212ENST00000621990 LINC01006Q8NI28 216 aa6.79□□□□□ -1.32
PDPN-212ENST00000621990 FAM110AQ9BQ89 295 aa6.79□□□□□ -1.32
PDPN-212ENST00000621990 TIMM21Q9BVV7 248 aa6.79□□□□□ -1.32
PDPN-212ENST00000621990 IGHV1-58A0A0C4DH39 117 aa6.78□□□□□ -1.32
PDPN-212ENST00000621990 A0A1W2PRX2 142 aa6.78□□□□□ -1.32
PDPN-212ENST00000621990 SETXQ7Z333 2677 aaKnown RBP6.78□□□□□ -1.32
PDPN-212ENST00000621990 CMC4P56277 68 aaPredicted RBP6.78□□□□□ -1.32
PDPN-212ENST00000621990 TMEM263Q8WUH6 116 aaKnown RBP6.78□□□□□ -1.32
PDPN-212ENST00000621990 LITAFQ99732 161 aa6.78□□□□□ -1.32
PDPN-212ENST00000621990 IGLV5-45A0A087WSX0 123 aa6.78□□□□□ -1.32
PDPN-212ENST00000621990 A0A0J9YXY3 114 aa6.78□□□□□ -1.32
PDPN-212ENST00000621990 TMEM238C9JI98 176 aa6.78□□□□□ -1.32
PDPN-212ENST00000621990 APOMO95445 188 aa6.78□□□□□ -1.32
PDPN-212ENST00000621990 C11orf44Q8N8P7 122 aa6.78□□□□□ -1.32
PDPN-212ENST00000621990 PRO1854Q9UHT4 67 aa6.78□□□□□ -1.32
PDPN-212ENST00000621990 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.77□□□□□ -1.33
PDPN-212ENST00000621990 A0A0B4J2C4 111 aa6.77□□□□□ -1.33
PDPN-212ENST00000621990 TRBV10-1A0A0K0K1A3 114 aa6.77□□□□□ -1.33
PDPN-212ENST00000621990 IGKV2-29A2NJV5 120 aaPredicted RBP6.77□□□□□ -1.33
PDPN-212ENST00000621990 EIF4EBP3O60516 100 aaPredicted RBP6.77□□□□□ -1.33
PDPN-212ENST00000621990 GIG44P09565 113 aaPredicted RBP6.77□□□□□ -1.33
PDPN-212ENST00000621990 RPL24P83731 157 aaKnown RBP6.77□□□□□ -1.33
PDPN-212ENST00000621990 LYRM7Q5U5X0 104 aa6.77□□□□□ -1.33
PDPN-212ENST00000621990 Q6ZUT4 128 aa6.77□□□□□ -1.33
PDPN-212ENST00000621990 VSIG2Q96IQ7 327 aa6.77□□□□□ -1.33
PDPN-212ENST00000621990 IGHV3-64A0A075B6Q5 118 aa6.77□□□□□ -1.33
PDPN-212ENST00000621990 A4D1N5 150 aa6.76□□□□□ -1.33
PDPN-212ENST00000621990 DAZ2Q13117 558 aaKnown RBP6.76□□□□□ -1.33
PDPN-212ENST00000621990 FAM19A3Q7Z5A8 133 aa6.76□□□□□ -1.33
PDPN-212ENST00000621990 CCDC168Q8NDH2 2452 aa6.76□□□□□ -1.33
PDPN-212ENST00000621990 TRBV20-1A0A075B6N2 111 aa6.76□□□□□ -1.33
PDPN-212ENST00000621990 TRAV4A0A0B4J268 109 aa6.76□□□□□ -1.33
PDPN-212ENST00000621990 IGHV3-38A0A0C4DH36 116 aa6.76□□□□□ -1.33
PDPN-212ENST00000621990 IGLV1-51P01701 117 aa6.76□□□□□ -1.33
PDPN-212ENST00000621990 TIRAPP58753 221 aa6.76□□□□□ -1.33
PDPN-212ENST00000621990 RNASE13Q5GAN3 156 aaKnown RBP6.76□□□□□ -1.33
PDPN-212ENST00000621990 HIST2H2BCQ6DN03 193 aa6.76□□□□□ -1.33
PDPN-212ENST00000621990 C19orf73Q9NVV2 129 aa6.76□□□□□ -1.33
PDPN-212ENST00000621990 CSDC2Q9Y534 153 aaKnown RBP6.76□□□□□ -1.33
PDPN-212ENST00000621990 ITPR2Q14571 2701 aa6.75□□□□□ -1.33
PDPN-212ENST00000621990 TRGV1A0A0A0MS02 117 aa6.75□□□□□ -1.33
PDPN-212ENST00000621990 TRAV8-3A0A0A6YYJ7 113 aa6.75□□□□□ -1.33
PDPN-212ENST00000621990 ADARB2-AS1A8MUL3 147 aa6.75□□□□□ -1.33
PDPN-212ENST00000621990 DAZ4Q86SG3 579 aaKnown RBP6.75□□□□□ -1.33
PDPN-212ENST00000621990 MUSTN1Q8IVN3 82 aa6.75□□□□□ -1.33
PDPN-212ENST00000621990 SPANXDQ9BXN6 97 aa6.75□□□□□ -1.33
PDPN-212ENST00000621990 DAZ3Q9NR90 486 aaKnown RBP6.75□□□□□ -1.33
PDPN-212ENST00000621990 SPANXCQ9NY87 97 aa6.75□□□□□ -1.33
PDPN-212ENST00000621990 LOC107984156A0A0G2JMH3 177 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms