RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 SMIM15Q7Z3B0 74 aa7.69□□□□□ -1.18
UPF3B-204ENST00000619445 RNF185Q96GF1 192 aa7.69□□□□□ -1.18
UPF3B-204ENST00000619445 CNFNQ9BYD5 112 aa7.69□□□□□ -1.18
UPF3B-204ENST00000619445 hDV102S1A0JD36 115 aa7.68□□□□□ -1.18
UPF3B-204ENST00000619445 NTF3P20783 257 aa7.68□□□□□ -1.18
UPF3B-204ENST00000619445 CTRLP40313 264 aa7.68□□□□□ -1.18
UPF3B-204ENST00000619445 AMTP48728 403 aa7.68□□□□□ -1.18
UPF3B-204ENST00000619445 SMCPP49901 116 aaPredicted RBP7.68□□□□□ -1.18
UPF3B-204ENST00000619445 LYZL1Q6UWQ5 148 aa7.68□□□□□ -1.18
UPF3B-204ENST00000619445 SDIM1Q6ZPB5 146 aa7.68□□□□□ -1.18
UPF3B-204ENST00000619445 SLC51BQ86UW2 128 aa7.68□□□□□ -1.18
UPF3B-204ENST00000619445 C20orf203Q8NBC4 194 aa7.68□□□□□ -1.18
UPF3B-204ENST00000619445 IGLV10-54A0A075B6I4 117 aa7.67□□□□□ -1.18
UPF3B-204ENST00000619445 IGHV3-64A0A075B6Q5 118 aa7.67□□□□□ -1.18
UPF3B-204ENST00000619445 RAB19A4D1S5 217 aa7.67□□□□□ -1.18
UPF3B-204ENST00000619445 NCR2O95944 276 aa7.67□□□□□ -1.18
UPF3B-204ENST00000619445 FAM210AQ96ND0 272 aa7.67□□□□□ -1.18
UPF3B-204ENST00000619445 TRBV20OR9-2A0A075B6H5 130 aa7.66□□□□□ -1.18
UPF3B-204ENST00000619445 H7C423 109 aa7.66□□□□□ -1.18
UPF3B-204ENST00000619445 CIRBPQ14011 172 aaKnown RBP7.66□□□□□ -1.18
UPF3B-204ENST00000619445 TWIST1Q15672 202 aa7.66□□□□□ -1.18
UPF3B-204ENST00000619445 NUDT10Q8NFP7 164 aa7.66□□□□□ -1.18
UPF3B-204ENST00000619445 NUDT11Q96G61 164 aa7.66□□□□□ -1.18
UPF3B-204ENST00000619445 RPP21Q9H633 154 aaKnown RBP7.66□□□□□ -1.18
UPF3B-204ENST00000619445 TCTE3Q8IZS6 198 aa7.65□□□□□ -1.18
UPF3B-204ENST00000619445 PKIGQ9Y2B9 76 aa7.65□□□□□ -1.18
UPF3B-204ENST00000619445 IGLV4-60A0A075B6I1 120 aa7.64□□□□□ -1.19
UPF3B-204ENST00000619445 AMMECR1LQ6DCA0 310 aa7.64□□□□□ -1.19
UPF3B-204ENST00000619445 DPH3Q96FX2 82 aa7.64□□□□□ -1.19
UPF3B-204ENST00000619445 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.64□□□□□ -1.19
UPF3B-204ENST00000619445 TMEM250H0YL14 139 aa7.63□□□□□ -1.19
UPF3B-204ENST00000619445 Q6ZRU5 148 aa7.63□□□□□ -1.19
UPF3B-204ENST00000619445 LRP1Q07954 4544 aaKnown RBP7.63□□□□□ -1.19
UPF3B-204ENST00000619445 A8MWL6 223 aa7.62□□□□□ -1.19
UPF3B-204ENST00000619445 ZNF25P17030 456 aaPredicted RBP7.62□□□□□ -1.19
UPF3B-204ENST00000619445 GATD1Q8NB37 220 aa7.62□□□□□ -1.19
UPF3B-204ENST00000619445 APCSP02743 223 aa7.61□□□□□ -1.19
UPF3B-204ENST00000619445 BLOC1S1P78537 153 aa7.61□□□□□ -1.19
UPF3B-204ENST00000619445 CT83Q5H943 113 aa7.61□□□□□ -1.19
UPF3B-204ENST00000619445 C7orf33Q8WU49 177 aa7.61□□□□□ -1.19
UPF3B-204ENST00000619445 BORCS7Q96B45 105 aa7.61□□□□□ -1.19
UPF3B-204ENST00000619445 RNASE7Q9H1E1 156 aaKnown RBP7.61□□□□□ -1.19
UPF3B-204ENST00000619445 RPS10P46783 165 aaKnown RBP7.6□□□□□ -1.19
UPF3B-204ENST00000619445 FAM231DQ6ZW35 169 aa7.6□□□□□ -1.19
UPF3B-204ENST00000619445 OCC1Q8TAD7 63 aa7.6□□□□□ -1.19
UPF3B-204ENST00000619445 SPACA4Q8TDM5 124 aa7.6□□□□□ -1.19
UPF3B-204ENST00000619445 TMEM101Q96IK0 257 aa7.6□□□□□ -1.19
UPF3B-204ENST00000619445 BTF3L4Q96K17 158 aa7.6□□□□□ -1.19
UPF3B-204ENST00000619445 GFRA4Q9GZZ7 299 aa7.6□□□□□ -1.19
UPF3B-204ENST00000619445 PLA2G2DQ9UNK4 145 aa7.6□□□□□ -1.19
UPF3B-204ENST00000619445 FAT3Q8TDW7 4589 aa7.6□□□□□ -1.19
UPF3B-204ENST00000619445 GAGE12HA6NDE8 117 aa7.59□□□□□ -1.19
UPF3B-204ENST00000619445 SDHAF1A6NFY7 115 aa7.59□□□□□ -1.19
UPF3B-204ENST00000619445 I3L3M4 83 aa7.59□□□□□ -1.19
UPF3B-204ENST00000619445 K7EN84 100 aa7.59□□□□□ -1.19
UPF3B-204ENST00000619445 GATCO43716 136 aaKnown RBP7.59□□□□□ -1.19
UPF3B-204ENST00000619445 NDUFS6O75380 124 aaKnown RBP7.59□□□□□ -1.19
UPF3B-204ENST00000619445 RNASEKQ6P5S7 137 aaKnown RBP7.59□□□□□ -1.19
UPF3B-204ENST00000619445 PLAC8Q9NZF1 115 aa7.59□□□□□ -1.19
UPF3B-204ENST00000619445 LINC00474Q9P2X8 69 aa7.59□□□□□ -1.19
UPF3B-204ENST00000619445 A0A087WYN8 130 aa7.59□□□□□ -1.2
UPF3B-204ENST00000619445 GVQW2A0A096LPI5 108 aaPredicted RBP7.59□□□□□ -1.2
UPF3B-204ENST00000619445 TRBV6-5A0A0K0K1A5 114 aa7.59□□□□□ -1.2
UPF3B-204ENST00000619445 PANO1I0J062 215 aa7.59□□□□□ -1.2
UPF3B-204ENST00000619445 FGF6P10767 208 aa7.59□□□□□ -1.2
UPF3B-204ENST00000619445 FOXA3P55318 350 aaPredicted RBP7.59□□□□□ -1.2
UPF3B-204ENST00000619445 C15orf56Q8N910 161 aa7.59□□□□□ -1.2
UPF3B-204ENST00000619445 CHCHD10Q8WYQ3 142 aaPredicted RBP7.59□□□□□ -1.2
UPF3B-204ENST00000619445 PKHD1L1Q86WI1 4243 aa7.58□□□□□ -1.2
UPF3B-204ENST00000619445 TRAV26-2A0A0B4J265 109 aa7.58□□□□□ -1.2
UPF3B-204ENST00000619445 IGKV3OR2-268A0A0C4DH90 116 aa7.58□□□□□ -1.2
UPF3B-204ENST00000619445 FAM231BA6NCW3 169 aa7.58□□□□□ -1.2
UPF3B-204ENST00000619445 SLPIP03973 132 aa7.58□□□□□ -1.2
UPF3B-204ENST00000619445 PMCHP20382 165 aa7.58□□□□□ -1.2
UPF3B-204ENST00000619445 SMAGPQ0VAQ4 97 aa7.58□□□□□ -1.2
UPF3B-204ENST00000619445 Q6ZNX1 250 aa7.58□□□□□ -1.2
UPF3B-204ENST00000619445 OR5A1Q8NGJ0 315 aa7.58□□□□□ -1.2
UPF3B-204ENST00000619445 GTSF1Q8WW33 167 aa7.58□□□□□ -1.2
UPF3B-204ENST00000619445 PPP1R17O96001 155 aa7.57□□□□□ -1.2
UPF3B-204ENST00000619445 RPL39LQ96EH5 51 aaKnown RBP7.57□□□□□ -1.2
UPF3B-204ENST00000619445 MRAP2Q96G30 205 aa7.57□□□□□ -1.2
UPF3B-204ENST00000619445 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.56□□□□□ -1.2
UPF3B-204ENST00000619445 A0A1B0GUT8 65 aa7.56□□□□□ -1.2
UPF3B-204ENST00000619445 IGKV2-29A2NJV5 120 aaPredicted RBP7.56□□□□□ -1.2
UPF3B-204ENST00000619445 HNRNPA3P51991 378 aaKnown RBP7.56□□□□□ -1.2
UPF3B-204ENST00000619445 COX6A2Q02221 97 aa7.56□□□□□ -1.2
UPF3B-204ENST00000619445 LYPD6BQ8NI32 183 aa7.56□□□□□ -1.2
UPF3B-204ENST00000619445 ST20Q9HBF5 79 aa7.56□□□□□ -1.2
UPF3B-204ENST00000619445 IGHV1-58A0A0C4DH39 117 aa7.55□□□□□ -1.2
UPF3B-204ENST00000619445 CCL25O15444 150 aa7.55□□□□□ -1.2
UPF3B-204ENST00000619445 CHTF8P0CG12 524 aa7.55□□□□□ -1.2
UPF3B-204ENST00000619445 SS18Q15532 418 aa7.55□□□□□ -1.2
UPF3B-204ENST00000619445 AKAP14Q86UN6 197 aa7.55□□□□□ -1.2
UPF3B-204ENST00000619445 TSKUQ8WUA8 353 aa7.55□□□□□ -1.2
UPF3B-204ENST00000619445 TMEM191AQ9H0A3 160 aa7.55□□□□□ -1.2
UPF3B-204ENST00000619445 HMCN2Q8NDA2 5059 aa7.55□□□□□ -1.2
UPF3B-204ENST00000619445 TMEM238LA0A1B0GVL6 79 aa7.54□□□□□ -1.2
UPF3B-204ENST00000619445 ESDP10768 282 aa7.54□□□□□ -1.2
UPF3B-204ENST00000619445 FOXI1Q12951 378 aa7.54□□□□□ -1.2
UPF3B-204ENST00000619445 MAJINQ3KP22 176 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms