RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 XKRY2A2RUG3 117 aa15.79■□□□□ 0.12
PTPRF-216ENST00000617451 RAB19A4D1S5 217 aa15.79■□□□□ 0.12
PTPRF-216ENST00000617451 TRGC1P0CF51 173 aa15.79■□□□□ 0.12
PTPRF-216ENST00000617451 LYZL1Q6UWQ5 148 aa15.79■□□□□ 0.12
PTPRF-216ENST00000617451 SMIM12Q96EX1 92 aa15.79■□□□□ 0.12
PTPRF-216ENST00000617451 DPH3P1Q9H4G8 78 aa15.79■□□□□ 0.12
PTPRF-216ENST00000617451 UBE2L6O14933 153 aa15.78■□□□□ 0.12
PTPRF-216ENST00000617451 GNG4P50150 75 aa15.78■□□□□ 0.12
PTPRF-216ENST00000617451 WDR73Q6P4I2 378 aa15.78■□□□□ 0.12
PTPRF-216ENST00000617451 PLAC8Q9NZF1 115 aa15.78■□□□□ 0.12
PTPRF-216ENST00000617451 NTF3P20783 257 aa15.77■□□□□ 0.12
PTPRF-216ENST00000617451 AMTP48728 403 aa15.77■□□□□ 0.12
PTPRF-216ENST00000617451 SULT1A2P50226 295 aa15.77■□□□□ 0.12
PTPRF-216ENST00000617451 COTL1Q14019 142 aa15.77■□□□□ 0.12
PTPRF-216ENST00000617451 C15orf56Q8N910 161 aa15.77■□□□□ 0.12
PTPRF-216ENST00000617451 IFNA1P01562 189 aa15.76■□□□□ 0.11
PTPRF-216ENST00000617451 C9orf62Q8N4C0 152 aa15.75■□□□□ 0.11
PTPRF-216ENST00000617451 GAGE12HA6NDE8 117 aa15.74■□□□□ 0.11
PTPRF-216ENST00000617451 CFAP161Q6P656 301 aa15.74■□□□□ 0.11
PTPRF-216ENST00000617451 LRP2P98164 4655 aa15.74■□□□□ 0.11
PTPRF-216ENST00000617451 TRBV20OR9-2A0A075B6H5 130 aa15.73■□□□□ 0.11
PTPRF-216ENST00000617451 PHOX2AO14813 284 aa15.73■□□□□ 0.11
PTPRF-216ENST00000617451 CTRLP40313 264 aa15.73■□□□□ 0.11
PTPRF-216ENST00000617451 PDE6DO43924 150 aa15.72■□□□□ 0.11
PTPRF-216ENST00000617451 MEF2BQ02080 365 aaPredicted RBP15.72■□□□□ 0.11
PTPRF-216ENST00000617451 COX6A2Q02221 97 aa15.72■□□□□ 0.11
PTPRF-216ENST00000617451 BIN3Q9NQY0 253 aa15.72■□□□□ 0.11
PTPRF-216ENST00000617451 RPS10P46783 165 aaKnown RBP15.71■□□□□ 0.11
PTPRF-216ENST00000617451 C7orf33Q8WU49 177 aa15.71■□□□□ 0.11
PTPRF-216ENST00000617451 CNFNQ9BYD5 112 aa15.71■□□□□ 0.11
PTPRF-216ENST00000617451 IGKV3OR2-268A0A0C4DH90 116 aa15.7■□□□□ 0.1
PTPRF-216ENST00000617451 TEX46H3BTG2 121 aa15.7■□□□□ 0.1
PTPRF-216ENST00000617451 GATD1Q8NB37 220 aa15.7■□□□□ 0.1
PTPRF-216ENST00000617451 MED9Q9NWA0 146 aa15.7■□□□□ 0.1
PTPRF-216ENST00000617451 TWIST1Q15672 202 aa15.69■□□□□ 0.1
PTPRF-216ENST00000617451 HIGD2BQ4VC39 106 aa15.69■□□□□ 0.1
PTPRF-216ENST00000617451 NUDT10Q8NFP7 164 aa15.69■□□□□ 0.1
PTPRF-216ENST00000617451 PRSS3P2Q8NHM4 247 aa15.69■□□□□ 0.1
PTPRF-216ENST00000617451 NUDT11Q96G61 164 aa15.69■□□□□ 0.1
PTPRF-216ENST00000617451 NDUFS6O75380 124 aaKnown RBP15.68■□□□□ 0.1
PTPRF-216ENST00000617451 TRAV26-2A0A0B4J265 109 aa15.67■□□□□ 0.1
PTPRF-216ENST00000617451 MAJINQ3KP22 176 aa15.67■□□□□ 0.1
PTPRF-216ENST00000617451 Q6ZNX1 250 aa15.67■□□□□ 0.1
PTPRF-216ENST00000617451 CHCHD10Q8WYQ3 142 aaPredicted RBP15.67■□□□□ 0.1
PTPRF-216ENST00000617451 RNF213Q63HN8 5207 aa15.67■□□□□ 0.1
PTPRF-216ENST00000617451 AMMECR1LQ6DCA0 310 aa15.66■□□□□ 0.1
PTPRF-216ENST00000617451 EIF5AL1Q6IS14 154 aaKnown RBP15.66■□□□□ 0.1
PTPRF-216ENST00000617451 GVQW2A0A096LPI5 108 aaPredicted RBP15.65■□□□□ 0.1
PTPRF-216ENST00000617451 IGKV2-24A0A0C4DH68 120 aa15.65■□□□□ 0.1
PTPRF-216ENST00000617451 NCR2O95944 276 aa15.65■□□□□ 0.1
PTPRF-216ENST00000617451 GTSF1Q8WW33 167 aa15.65■□□□□ 0.1
PTPRF-216ENST00000617451 H7C423 109 aa15.64■□□□□ 0.09
PTPRF-216ENST00000617451 BCL2P10415 239 aa15.64■□□□□ 0.09
PTPRF-216ENST00000617451 RPL39LQ96EH5 51 aaKnown RBP15.64■□□□□ 0.09
PTPRF-216ENST00000617451 RPP21Q9H633 154 aaKnown RBP15.64■□□□□ 0.09
PTPRF-216ENST00000617451 IGKV2D-29A0A075B6S2 120 aaPredicted RBP15.63■□□□□ 0.09
PTPRF-216ENST00000617451 IGKV2-29A2NJV5 120 aaPredicted RBP15.63■□□□□ 0.09
PTPRF-216ENST00000617451 PRR3P79522 188 aaKnown RBP15.63■□□□□ 0.09
PTPRF-216ENST00000617451 RNASEKQ6P5S7 137 aaKnown RBP15.63■□□□□ 0.09
PTPRF-216ENST00000617451 STPG4Q8N801 248 aa15.63■□□□□ 0.09
PTPRF-216ENST00000617451 LINC01600Q96MT4 127 aa15.63■□□□□ 0.09
PTPRF-216ENST00000617451 RNASE7Q9H1E1 156 aaKnown RBP15.62■□□□□ 0.09
PTPRF-216ENST00000617451 APCSP02743 223 aa15.61■□□□□ 0.09
PTPRF-216ENST00000617451 FGF6P10767 208 aa15.61■□□□□ 0.09
PTPRF-216ENST00000617451 FOXI1Q12951 378 aa15.61■□□□□ 0.09
PTPRF-216ENST00000617451 K7EN84 100 aa15.6■□□□□ 0.09
PTPRF-216ENST00000617451 FOXA3P55318 350 aaPredicted RBP15.6■□□□□ 0.09
PTPRF-216ENST00000617451 LYPD6BQ8NI32 183 aa15.6■□□□□ 0.09
PTPRF-216ENST00000617451 A0A096LNI7 61 aa15.59■□□□□ 0.09
PTPRF-216ENST00000617451 SDHAF1A6NFY7 115 aa15.59■□□□□ 0.09
PTPRF-216ENST00000617451 TEX261Q6UWH6 196 aa15.59■□□□□ 0.09
PTPRF-216ENST00000617451 SMIM15Q7Z3B0 74 aa15.59■□□□□ 0.09
PTPRF-216ENST00000617451 OCC1Q8TAD7 63 aa15.59■□□□□ 0.09
PTPRF-216ENST00000617451 OR5A1Q8NGJ0 315 aa15.58■□□□□ 0.08
PTPRF-216ENST00000617451 ZNF25P17030 456 aaPredicted RBP15.57■□□□□ 0.08
PTPRF-216ENST00000617451 TAGLN2P37802 199 aaKnown RBP15.57■□□□□ 0.08
PTPRF-216ENST00000617451 FAM231BA6NCW3 169 aa15.56■□□□□ 0.08
PTPRF-216ENST00000617451 LINC00474Q9P2X8 69 aa15.56■□□□□ 0.08
PTPRF-216ENST00000617451 XCL1P47992 114 aa15.55■□□□□ 0.08
PTPRF-216ENST00000617451 LINC00959A0A1B0GUT2 108 aa15.54■□□□□ 0.08
PTPRF-216ENST00000617451 I3L3M4 83 aa15.54■□□□□ 0.08
PTPRF-216ENST00000617451 IGHV1-58A0A0C4DH39 117 aa15.53■□□□□ 0.08
PTPRF-216ENST00000617451 TRBV6-5A0A0K0K1A5 114 aa15.53■□□□□ 0.08
PTPRF-216ENST00000617451 PMCHP20382 165 aa15.53■□□□□ 0.08
PTPRF-216ENST00000617451 ODF1Q14990 250 aa15.53■□□□□ 0.08
PTPRF-216ENST00000617451 LINC00526Q96FQ7 95 aa15.53■□□□□ 0.08
PTPRF-216ENST00000617451 BTF3L4Q96K17 158 aa15.53■□□□□ 0.08
PTPRF-216ENST00000617451 PKIGQ9Y2B9 76 aa15.53■□□□□ 0.08
PTPRF-216ENST00000617451 A0A0J9YXV3 536 aa15.52■□□□□ 0.08
PTPRF-216ENST00000617451 CCL25O15444 150 aa15.52■□□□□ 0.08
PTPRF-216ENST00000617451 ESDP10768 282 aa15.52■□□□□ 0.08
PTPRF-216ENST00000617451 SPINK6Q6UWN8 80 aa15.52■□□□□ 0.08
PTPRF-216ENST00000617451 TMEM101Q96IK0 257 aa15.52■□□□□ 0.08
PTPRF-216ENST00000617451 CARD19Q96LW7 228 aa15.51■□□□□ 0.07
PTPRF-216ENST00000617451 KRTAP10-8P60410 259 aa15.5■□□□□ 0.07
PTPRF-216ENST00000617451 SLC51BQ86UW2 128 aa15.5■□□□□ 0.07
PTPRF-216ENST00000617451 GATCO43716 136 aaKnown RBP15.49■□□□□ 0.07
PTPRF-216ENST00000617451 GAS8-AS1O95177 125 aa15.49■□□□□ 0.07
PTPRF-216ENST00000617451 TSHBP01222 138 aa15.49■□□□□ 0.07
PTPRF-216ENST00000617451 A8MWL6 223 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms