RNA–Protein interactions for RNA: ENST00000615136.4

MMP28-204, Transcript of matrix metallopeptidase 28, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MMP28, Length 2,033 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-204ENST00000615136 HIST1H4GQ99525 98 aa13.87□□□□□ -0.19
MMP28-204ENST00000615136 CBY1Q9Y3M2 126 aa13.86□□□□□ -0.19
MMP28-204ENST00000615136 IGHV3OR16-12A0A075B7B8 117 aa13.86□□□□□ -0.19
MMP28-204ENST00000615136 FABP2P12104 132 aa13.86□□□□□ -0.19
MMP28-204ENST00000615136 BEAN1Q3B7T3 259 aa13.86□□□□□ -0.19
MMP28-204ENST00000615136 OR5A1Q8NGJ0 315 aa13.86□□□□□ -0.19
MMP28-204ENST00000615136 SPCS1Q9Y6A9 102 aa13.86□□□□□ -0.19
MMP28-204ENST00000615136 PIK3CD-AS1Q5SR53 167 aa13.85□□□□□ -0.19
MMP28-204ENST00000615136 I3L3M4 83 aa13.85□□□□□ -0.19
MMP28-204ENST00000615136 CRLF1O75462 422 aa13.85□□□□□ -0.19
MMP28-204ENST00000615136 GIG44P09565 113 aaPredicted RBP13.85□□□□□ -0.19
MMP28-204ENST00000615136 P0DMU3 169 aa13.85□□□□□ -0.19
MMP28-204ENST00000615136 FAM231AP0DMU4 169 aa13.85□□□□□ -0.19
MMP28-204ENST00000615136 FAM231CP0DMU5 169 aa13.85□□□□□ -0.19
MMP28-204ENST00000615136 HERVK_113P61574 105 aa13.85□□□□□ -0.19
MMP28-204ENST00000615136 ZNF415Q09FC8 603 aa13.85□□□□□ -0.19
MMP28-204ENST00000615136 LINC00482Q8N8I6 264 aa13.85□□□□□ -0.19
MMP28-204ENST00000615136 LINC00467Q9BRT7 94 aa13.85□□□□□ -0.19
MMP28-204ENST00000615136 ZNF815PA8K554 130 aa13.84□□□□□ -0.19
MMP28-204ENST00000615136 M0R2P5 195 aa13.84□□□□□ -0.19
MMP28-204ENST00000615136 OCIAD2Q56VL3 154 aa13.84□□□□□ -0.19
MMP28-204ENST00000615136 C20orf203Q8NBC4 194 aa13.84□□□□□ -0.19
MMP28-204ENST00000615136 A0A1B0GWB2 263 aa13.83□□□□□ -0.2
MMP28-204ENST00000615136 PF4P02776 101 aa13.83□□□□□ -0.2
MMP28-204ENST00000615136 PTH2Q96A98 100 aa13.83□□□□□ -0.2
MMP28-204ENST00000615136 MRPL16Q9NX20 251 aaKnown RBP13.83□□□□□ -0.2
MMP28-204ENST00000615136 Q9UF83 564 aa13.83□□□□□ -0.2
MMP28-204ENST00000615136 EMP1P54849 157 aa13.83□□□□□ -0.2
MMP28-204ENST00000615136 C12orf74Q32Q52 190 aa13.83□□□□□ -0.2
MMP28-204ENST00000615136 NOTCH3Q9UM47 2321 aa13.83□□□□□ -0.2
MMP28-204ENST00000615136 Q6ZSN1 163 aa13.82□□□□□ -0.2
MMP28-204ENST00000615136 ZNRF2Q8NHG8 242 aa13.82□□□□□ -0.2
MMP28-204ENST00000615136 A8MWV9 139 aa13.81□□□□□ -0.2
MMP28-204ENST00000615136 RPL35AP18077 110 aaKnown RBP13.81□□□□□ -0.2
MMP28-204ENST00000615136 NFE4Q86UQ8 179 aa13.81□□□□□ -0.2
MMP28-204ENST00000615136 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.81□□□□□ -0.2
MMP28-204ENST00000615136 IGLL5B9A064 214 aa13.8□□□□□ -0.2
MMP28-204ENST00000615136 CFAP126Q5VTH2 177 aa13.8□□□□□ -0.2
MMP28-204ENST00000615136 PLEKHB2Q96CS7 222 aa13.8□□□□□ -0.2
MMP28-204ENST00000615136 F8P00451 2351 aa13.78□□□□□ -0.2
MMP28-204ENST00000615136 TMEM170BQ5T4T1 132 aa13.78□□□□□ -0.2
MMP28-204ENST00000615136 SCGB1D4Q6XE38 83 aa13.78□□□□□ -0.2
MMP28-204ENST00000615136 OPRPNQ99935 248 aaPredicted RBP13.78□□□□□ -0.2
MMP28-204ENST00000615136 ATRQ13535 2644 aa13.78□□□□□ -0.2
MMP28-204ENST00000615136 IL17DQ8TAD2 202 aa13.78□□□□□ -0.2
MMP28-204ENST00000615136 FAM110AQ9BQ89 295 aa13.78□□□□□ -0.2
MMP28-204ENST00000615136 IGLV4-3A0A075B6K6 122 aa13.77□□□□□ -0.21
MMP28-204ENST00000615136 TSPEAR-AS2P59090 65 aa13.77□□□□□ -0.21
MMP28-204ENST00000615136 ZNF479Q96JC4 524 aa13.77□□□□□ -0.21
MMP28-204ENST00000615136 CMC4P56277 68 aaPredicted RBP13.76□□□□□ -0.21
MMP28-204ENST00000615136 SPXQ9BT56 116 aa13.76□□□□□ -0.21
MMP28-204ENST00000615136 PYGO1Q9Y3Y4 419 aa13.76□□□□□ -0.21
MMP28-204ENST00000615136 A0A0J9YY99 117 aa13.76□□□□□ -0.21
MMP28-204ENST00000615136 TRRAPQ9Y4A5 3859 aa13.75□□□□□ -0.21
MMP28-204ENST00000615136 K7ERU9 68 aa13.75□□□□□ -0.21
MMP28-204ENST00000615136 RHODO00212 210 aa13.75□□□□□ -0.21
MMP28-204ENST00000615136 RRN3P1Q2M238 152 aa13.75□□□□□ -0.21
MMP28-204ENST00000615136 AMELXQ99217 191 aa13.75□□□□□ -0.21
MMP28-204ENST00000615136 TEP1Q99973 2627 aaKnown RBP13.75□□□□□ -0.21
MMP28-204ENST00000615136 TMEM238LA0A1B0GVL6 79 aa13.74□□□□□ -0.21
MMP28-204ENST00000615136 A6NJY4 79 aa13.74□□□□□ -0.21
MMP28-204ENST00000615136 SPANXB1Q9NS25 103 aaPredicted RBP13.74□□□□□ -0.21
MMP28-204ENST00000615136 TMEM223A0PJW6 202 aa13.74□□□□□ -0.21
MMP28-204ENST00000615136 CSNK1G2-AS1Q8NCQ2 148 aa13.74□□□□□ -0.21
MMP28-204ENST00000615136 TNFRSF18Q9Y5U5 241 aa13.74□□□□□ -0.21
MMP28-204ENST00000615136 J3QQQ9 107 aa13.73□□□□□ -0.21
MMP28-204ENST00000615136 RS1O15537 224 aa13.73□□□□□ -0.21
MMP28-204ENST00000615136 UBE2D1P51668 147 aa13.73□□□□□ -0.21
MMP28-204ENST00000615136 TRGV1A0A0A0MS02 117 aa13.73□□□□□ -0.21
MMP28-204ENST00000615136 ZNF22P17026 224 aaPredicted RBP13.73□□□□□ -0.21
MMP28-204ENST00000615136 CRYBA4P53673 196 aa13.73□□□□□ -0.21
MMP28-204ENST00000615136 RNF151Q2KHN1 245 aa13.73□□□□□ -0.21
MMP28-204ENST00000615136 Q6ZTI0 123 aa13.73□□□□□ -0.21
MMP28-204ENST00000615136 FAM104AQ969W3 186 aa13.73□□□□□ -0.21
MMP28-204ENST00000615136 VCX2Q9H322 139 aa13.73□□□□□ -0.21
MMP28-204ENST00000615136 PLAC8L1A1L4L8 177 aa13.72□□□□□ -0.21
MMP28-204ENST00000615136 IGHV3-53P01767 116 aa13.72□□□□□ -0.21
MMP28-204ENST00000615136 SRSF9Q13242 221 aaKnown RBP eCLIP13.72□□□□□ -0.21
MMP28-204ENST00000615136 CITED1Q99966 193 aa13.72□□□□□ -0.21
MMP28-204ENST00000615136 LEPROTO15243 131 aa13.71□□□□□ -0.21
MMP28-204ENST00000615136 TMEM263Q8WUH6 116 aaKnown RBP13.71□□□□□ -0.21
MMP28-204ENST00000615136 SLC25A29Q8N8R3 303 aa13.71□□□□□ -0.22
MMP28-204ENST00000615136 DNAJC30Q96LL9 226 aa13.71□□□□□ -0.22
MMP28-204ENST00000615136 LGALS3P17931 250 aaKnown RBP13.7□□□□□ -0.22
MMP28-204ENST00000615136 A0A0J9YXV3 536 aa13.69□□□□□ -0.22
MMP28-204ENST00000615136 CHCHD7Q9BUK0 85 aa13.69□□□□□ -0.22
MMP28-204ENST00000615136 NOP10Q9NPE3 64 aaKnown RBP13.69□□□□□ -0.22
MMP28-204ENST00000615136 MAST4O15021 2626 aa13.69□□□□□ -0.22
MMP28-204ENST00000615136 IGHV3-30P01768 117 aa13.68□□□□□ -0.22
MMP28-204ENST00000615136 IGHV3-30-5P0DP03 117 aa13.68□□□□□ -0.22
MMP28-204ENST00000615136 SPANXA1Q9NS26 97 aa13.68□□□□□ -0.22
MMP28-204ENST00000615136 MRPS36P82909 103 aaKnown RBP13.68□□□□□ -0.22
MMP28-204ENST00000615136 PGPEP1Q9NXJ5 209 aa13.67□□□□□ -0.22
MMP28-204ENST00000615136 IGHV3-38A0A0C4DH36 116 aa13.66□□□□□ -0.22
MMP28-204ENST00000615136 VPS25Q9BRG1 176 aa13.66□□□□□ -0.22
MMP28-204ENST00000615136 UBE2D4Q9Y2X8 147 aa13.66□□□□□ -0.22
MMP28-204ENST00000615136 C1QTNF4Q9BXJ3 329 aa13.66□□□□□ -0.22
MMP28-204ENST00000615136 C9orf66Q5T8R8 295 aa13.65□□□□□ -0.22
MMP28-204ENST00000615136 CEMP1Q6PRD7 247 aaPredicted RBP13.65□□□□□ -0.22
MMP28-204ENST00000615136 F8W1H4 67 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms