RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 OR5D14Q8NGL3 314 aa2.56□□□□□ -2
LINC00540-201ENST00000611481 RNASE11Q8TAA1 199 aaKnown RBP2.56□□□□□ -2
LINC00540-201ENST00000611481 MBD3L1Q8WWY6 194 aa2.56□□□□□ -2
LINC00540-201ENST00000611481 PHYHIPLQ96FC7 376 aa2.56□□□□□ -2
LINC00540-201ENST00000611481 NKX6-2Q9C056 277 aaPredicted RBP2.56□□□□□ -2
LINC00540-201ENST00000611481 TRAV9-1A0A075B6T8 112 aa2.55□□□□□ -2
LINC00540-201ENST00000611481 A0A096LNJ9 63 aa2.55□□□□□ -2
LINC00540-201ENST00000611481 M0R2Z0 102 aa2.55□□□□□ -2
LINC00540-201ENST00000611481 RBFOX2O43251 390 aaKnown RBP eCLIP2.55□□□□□ -2
LINC00540-201ENST00000611481 GNG7O60262 68 aa2.55□□□□□ -2
LINC00540-201ENST00000611481 FAM107AO95990 144 aa2.55□□□□□ -2
LINC00540-201ENST00000611481 HRASP01112 189 aa2.55□□□□□ -2
LINC00540-201ENST00000611481 KRASP01116 189 aa2.55□□□□□ -2
LINC00540-201ENST00000611481 IGHV3-30P01768 117 aa2.55□□□□□ -2
LINC00540-201ENST00000611481 IGHV3-33P01772 117 aa2.55□□□□□ -2
LINC00540-201ENST00000611481 SRP19P09132 144 aaKnown RBP2.55□□□□□ -2
LINC00540-201ENST00000611481 IGHV3-30-3P0DP02 117 aa2.55□□□□□ -2
LINC00540-201ENST00000611481 IGHV3-30-5P0DP03 117 aa2.55□□□□□ -2
LINC00540-201ENST00000611481 NTF3P20783 257 aa2.55□□□□□ -2
LINC00540-201ENST00000611481 WNT4P56705 351 aa2.55□□□□□ -2
LINC00540-201ENST00000611481 SPINK13Q1W4C9 94 aa2.55□□□□□ -2
LINC00540-201ENST00000611481 PRSS54Q6PEW0 395 aa2.55□□□□□ -2
LINC00540-201ENST00000611481 Q6Q795 121 aa2.55□□□□□ -2
LINC00540-201ENST00000611481 CLVS1Q8IUQ0 354 aaPredicted RBP2.55□□□□□ -2
LINC00540-201ENST00000611481 H1FOOQ8IZA3 346 aaPredicted RBP2.55□□□□□ -2
LINC00540-201ENST00000611481 VSTM2AQ8TAG5 236 aa2.55□□□□□ -2
LINC00540-201ENST00000611481 TOMM6Q96B49 74 aa2.55□□□□□ -2
LINC00540-201ENST00000611481 DPH3Q96FX2 82 aa2.55□□□□□ -2
LINC00540-201ENST00000611481 LINC00167Q96N53 147 aa2.55□□□□□ -2
LINC00540-201ENST00000611481 BANF2Q9H503 90 aa2.55□□□□□ -2
LINC00540-201ENST00000611481 PSORS1C2Q9UIG4 136 aa2.55□□□□□ -2
LINC00540-201ENST00000611481 GNG8Q9UK08 70 aa2.55□□□□□ -2
LINC00540-201ENST00000611481 CYSLTR1Q9Y271 337 aa2.55□□□□□ -2
LINC00540-201ENST00000611481 PHLDA3Q9Y5J5 127 aa2.55□□□□□ -2
LINC00540-201ENST00000611481 TRAV12-2A0A075B6T6 113 aa2.54□□□□□ -2
LINC00540-201ENST00000611481 PLA2G10O15496 165 aa2.54□□□□□ -2
LINC00540-201ENST00000611481 SMIM17P0DL12 118 aa2.54□□□□□ -2
LINC00540-201ENST00000611481 CRYBB3P26998 211 aa2.54□□□□□ -2
LINC00540-201ENST00000611481 TGFBR1P36897 503 aa2.54□□□□□ -2
LINC00540-201ENST00000611481 WT1-ASQ06250 92 aa2.54□□□□□ -2
LINC00540-201ENST00000611481 WHAMMP3Q1A5X7 153 aa2.54□□□□□ -2
LINC00540-201ENST00000611481 DEFB116Q30KQ4 102 aa2.54□□□□□ -2
LINC00540-201ENST00000611481 LINC01556Q5JQF7 62 aa2.54□□□□□ -2
LINC00540-201ENST00000611481 NUP35Q8NFH5 326 aa2.54□□□□□ -2
LINC00540-201ENST00000611481 C2orf50Q96LR7 162 aa2.54□□□□□ -2
LINC00540-201ENST00000611481 PFDN5Q99471 154 aa2.54□□□□□ -2
LINC00540-201ENST00000611481 IMUPQ9GZP8 106 aa2.54□□□□□ -2
LINC00540-201ENST00000611481 GABARAPL1Q9H0R8 117 aa2.54□□□□□ -2
LINC00540-201ENST00000611481 LAMTOR3Q9UHA4 124 aa2.54□□□□□ -2
LINC00540-201ENST00000611481 PAIP2BQ9ULR5 123 aaKnown RBP2.54□□□□□ -2
LINC00540-201ENST00000611481 TRGV2A0A075B6R0 118 aa2.53□□□□□ -2
LINC00540-201ENST00000611481 BORCS7-ASMTA0A0B4J1R7 106 aa2.53□□□□□ -2
LINC00540-201ENST00000611481 J3KT08 172 aa2.53□□□□□ -2
LINC00540-201ENST00000611481 IGHV3-53P01767 116 aa2.53□□□□□ -2
LINC00540-201ENST00000611481 S100A1P23297 94 aa2.53□□□□□ -2
LINC00540-201ENST00000611481 SRIP30626 198 aa2.53□□□□□ -2
LINC00540-201ENST00000611481 ZNF93P35789 620 aaPredicted RBP2.53□□□□□ -2
LINC00540-201ENST00000611481 ETV6P41212 452 aa2.53□□□□□ -2
LINC00540-201ENST00000611481 AKR1C3P42330 323 aa2.53□□□□□ -2
LINC00540-201ENST00000611481 PIGPP57054 158 aa2.53□□□□□ -2
LINC00540-201ENST00000611481 DEFA3P59666 94 aa2.53□□□□□ -2
LINC00540-201ENST00000611481 RPS28P62857 69 aaKnown RBP2.53□□□□□ -2
LINC00540-201ENST00000611481 PRCDQ00LT1 54 aa2.53□□□□□ -2
LINC00540-201ENST00000611481 ZNF880Q6PDB4 577 aa2.53□□□□□ -2
LINC00540-201ENST00000611481 AMTNQ6UX39 209 aa2.53□□□□□ -2
LINC00540-201ENST00000611481 Q6ZTI0 123 aa2.53□□□□□ -2
LINC00540-201ENST00000611481 IFT20Q8IY31 132 aa2.53□□□□□ -2
LINC00540-201ENST00000611481 EXOC3-AS1Q8N2X6 119 aa2.53□□□□□ -2
LINC00540-201ENST00000611481 MIR7-3HGQ8N6C7 128 aa2.53□□□□□ -2
LINC00540-201ENST00000611481 ATP6V0E2Q8NHE4 81 aa2.53□□□□□ -2
LINC00540-201ENST00000611481 TMEM263Q8WUH6 116 aaKnown RBP2.53□□□□□ -2
LINC00540-201ENST00000611481 KRTAP4-1Q9BYQ7 146 aa2.53□□□□□ -2
LINC00540-201ENST00000611481 EFCAB1Q9HAE3 211 aa2.53□□□□□ -2
LINC00540-201ENST00000611481 TAS2R4Q9NYW5 299 aa2.53□□□□□ -2
LINC00540-201ENST00000611481 RBM7Q9Y580 266 aaKnown RBP2.53□□□□□ -2
LINC00540-201ENST00000611481 A0A087WX48 190 aa2.52□□□□□ -2.01
LINC00540-201ENST00000611481 A0A0J9YX75 114 aa2.52□□□□□ -2.01
LINC00540-201ENST00000611481 A0A1B0GX51 115 aa2.52□□□□□ -2.01
LINC00540-201ENST00000611481 A8MWP4 228 aa2.52□□□□□ -2.01
LINC00540-201ENST00000611481 I3L2K1 104 aa2.52□□□□□ -2.01
LINC00540-201ENST00000611481 HTR1AP08908 422 aa2.52□□□□□ -2.01
LINC00540-201ENST00000611481 CKS1BP61024 79 aa2.52□□□□□ -2.01
LINC00540-201ENST00000611481 CNBPP62633 177 aaKnown RBP2.52□□□□□ -2.01
LINC00540-201ENST00000611481 CCL20P78556 96 aa2.52□□□□□ -2.01
LINC00540-201ENST00000611481 MRPL51Q4U2R6 128 aaKnown RBP2.52□□□□□ -2.01
LINC00540-201ENST00000611481 LYRM7Q5U5X0 104 aa2.52□□□□□ -2.01
LINC00540-201ENST00000611481 GLIPR1L1Q6UWM5 242 aa2.52□□□□□ -2.01
LINC00540-201ENST00000611481 C6orf201Q7Z4U5 140 aa2.52□□□□□ -2.01
LINC00540-201ENST00000611481 ZFAND2AQ8N6M9 145 aa2.52□□□□□ -2.01
LINC00540-201ENST00000611481 SPANXA2-OT1Q8N9U9 137 aa2.52□□□□□ -2.01
LINC00540-201ENST00000611481 TMEM203Q969S6 136 aa2.52□□□□□ -2.01
LINC00540-201ENST00000611481 ZC2HC1AQ96GY0 325 aa2.52□□□□□ -2.01
LINC00540-201ENST00000611481 TMEM126AQ9H061 195 aa2.52□□□□□ -2.01
LINC00540-201ENST00000611481 TRAPPC1Q9Y5R8 145 aa2.52□□□□□ -2.01
LINC00540-201ENST00000611481 MUC12Q9UKN1 5478 aa2.51□□□□□ -2.01
LINC00540-201ENST00000611481 TRBV24-1A0A075B6N3 115 aa2.51□□□□□ -2.01
LINC00540-201ENST00000611481 DUXBA0A1W2PPF3 345 aa2.51□□□□□ -2.01
LINC00540-201ENST00000611481 TMEM235A6NFC5 223 aa2.51□□□□□ -2.01
LINC00540-201ENST00000611481 BET1O15155 118 aa2.51□□□□□ -2.01
LINC00540-201ENST00000611481 TRAPPC2P0DI81 140 aa2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms