RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 SFRP2Q96HF1 295 aa4.08□□□□□ -1.76
CUX1-220ENST00000607092 YPEL4Q96NS1 127 aa4.08□□□□□ -1.76
CUX1-220ENST00000607092 PKIGQ9Y2B9 76 aa4.08□□□□□ -1.76
CUX1-220ENST00000607092 TRAV9-1A0A075B6T8 112 aa4.07□□□□□ -1.76
CUX1-220ENST00000607092 IGKV3D-20A0A0C4DH25 116 aa4.07□□□□□ -1.76
CUX1-220ENST00000607092 LOC105371267A0A1B0GV96 52 aa4.07□□□□□ -1.76
CUX1-220ENST00000607092 USP17L23D6RBM5 183 aa4.07□□□□□ -1.76
CUX1-220ENST00000607092 H3BVH4 76 aa4.07□□□□□ -1.76
CUX1-220ENST00000607092 ANGP03950 147 aaKnown RBP4.07□□□□□ -1.76
CUX1-220ENST00000607092 ARMS2P0C7Q2 107 aa4.07□□□□□ -1.76
CUX1-220ENST00000607092 GZMBP10144 247 aa4.07□□□□□ -1.76
CUX1-220ENST00000607092 UBE2G2P60604 165 aa4.07□□□□□ -1.76
CUX1-220ENST00000607092 RAB5BP61020 215 aa4.07□□□□□ -1.76
CUX1-220ENST00000607092 UBE2D3P61077 147 aa4.07□□□□□ -1.76
CUX1-220ENST00000607092 UBE2D2P62837 147 aa4.07□□□□□ -1.76
CUX1-220ENST00000607092 ADIRFQ15847 76 aa4.07□□□□□ -1.76
CUX1-220ENST00000607092 ZNF674Q2M3X9 581 aa4.07□□□□□ -1.76
CUX1-220ENST00000607092 FAM162BQ5T6X4 162 aa4.07□□□□□ -1.76
CUX1-220ENST00000607092 LINC01551Q86U37 167 aa4.07□□□□□ -1.76
CUX1-220ENST00000607092 Q8N3U1 123 aa4.07□□□□□ -1.76
CUX1-220ENST00000607092 C14orf178Q8N769 122 aaPredicted RBP4.07□□□□□ -1.76
CUX1-220ENST00000607092 OCC1Q8TAD7 63 aa4.07□□□□□ -1.76
CUX1-220ENST00000607092 C7orf33Q8WU49 177 aa4.07□□□□□ -1.76
CUX1-220ENST00000607092 SGK494Q96LW2 274 aa4.07□□□□□ -1.76
CUX1-220ENST00000607092 CHCHD5Q9BSY4 110 aa4.07□□□□□ -1.76
CUX1-220ENST00000607092 BIN3Q9NQY0 253 aa4.07□□□□□ -1.76
CUX1-220ENST00000607092 IGHV3-64A0A075B6Q5 118 aa4.06□□□□□ -1.76
CUX1-220ENST00000607092 TRAV8-4A0A0B4J246 113 aa4.06□□□□□ -1.76
CUX1-220ENST00000607092 TRBV6-1A0A0K0K1D8 114 aa4.06□□□□□ -1.76
CUX1-220ENST00000607092 EIF3GO75821 320 aaKnown RBP eCLIP4.06□□□□□ -1.76
CUX1-220ENST00000607092 P01737 135 aa4.06□□□□□ -1.76
CUX1-220ENST00000607092 HLA-DQA1P01909 254 aa4.06□□□□□ -1.76
CUX1-220ENST00000607092 AKR1C3P42330 323 aa4.06□□□□□ -1.76
CUX1-220ENST00000607092 RAB4BP61018 213 aa4.06□□□□□ -1.76
CUX1-220ENST00000607092 UBE2G1P62253 170 aa4.06□□□□□ -1.76
CUX1-220ENST00000607092 CNBPP62633 177 aaKnown RBP4.06□□□□□ -1.76
CUX1-220ENST00000607092 COX19Q49B96 90 aa4.06□□□□□ -1.76
CUX1-220ENST00000607092 COX8CQ7Z4L0 72 aa4.06□□□□□ -1.76
CUX1-220ENST00000607092 ISOC2Q96AB3 205 aa4.06□□□□□ -1.76
CUX1-220ENST00000607092 DPH3Q96FX2 82 aa4.06□□□□□ -1.76
CUX1-220ENST00000607092 FMC1Q96HJ9 113 aa4.06□□□□□ -1.76
CUX1-220ENST00000607092 SAMD10Q9BYL1 202 aa4.06□□□□□ -1.76
CUX1-220ENST00000607092 OSTCQ9NRP0 149 aa4.06□□□□□ -1.76
CUX1-220ENST00000607092 TRBV25-1A0A075B6N4 114 aa4.05□□□□□ -1.76
CUX1-220ENST00000607092 H7C1H1 209 aa4.05□□□□□ -1.76
CUX1-220ENST00000607092 M0R381 172 aa4.05□□□□□ -1.76
CUX1-220ENST00000607092 PEX7O00628 323 aa4.05□□□□□ -1.76
CUX1-220ENST00000607092 CXCL1P09341 107 aa4.05□□□□□ -1.76
CUX1-220ENST00000607092 SMIM17P0DL12 118 aa4.05□□□□□ -1.76
CUX1-220ENST00000607092 RPL35P42766 123 aaKnown RBP4.05□□□□□ -1.76
CUX1-220ENST00000607092 GNG4P50150 75 aa4.05□□□□□ -1.76
CUX1-220ENST00000607092 CIRBPQ14011 172 aaKnown RBP4.05□□□□□ -1.76
CUX1-220ENST00000607092 ENHOQ6UWT2 76 aa4.05□□□□□ -1.76
CUX1-220ENST00000607092 SDIM1Q6ZPB5 146 aa4.05□□□□□ -1.76
CUX1-220ENST00000607092 Q86TA4 180 aa4.05□□□□□ -1.76
CUX1-220ENST00000607092 DAZAP1Q96EP5 407 aaKnown RBP4.05□□□□□ -1.76
CUX1-220ENST00000607092 PRR34Q9NV39 138 aa4.05□□□□□ -1.76
CUX1-220ENST00000607092 PKHD1L1Q86WI1 4243 aa4.05□□□□□ -1.76
CUX1-220ENST00000607092 LRP2P98164 4655 aa4.05□□□□□ -1.76
CUX1-220ENST00000607092 TRBV20OR9-2A0A075B6H5 130 aa4.04□□□□□ -1.76
CUX1-220ENST00000607092 SH2D1AO60880 128 aa4.04□□□□□ -1.76
CUX1-220ENST00000607092 S100A6P06703 90 aa4.04□□□□□ -1.76
CUX1-220ENST00000607092 PRSS1P07477 247 aa4.04□□□□□ -1.76
CUX1-220ENST00000607092 RPS10P46783 165 aaKnown RBP4.04□□□□□ -1.76
CUX1-220ENST00000607092 LINC00310P59036 64 aa4.04□□□□□ -1.76
CUX1-220ENST00000607092 ZNF56Q15929 161 aa4.04□□□□□ -1.76
CUX1-220ENST00000607092 MPV17L2Q567V2 206 aa4.04□□□□□ -1.76
CUX1-220ENST00000607092 WDR73Q6P4I2 378 aa4.04□□□□□ -1.76
CUX1-220ENST00000607092 CFAP161Q6P656 301 aa4.04□□□□□ -1.76
CUX1-220ENST00000607092 FAM231DQ6ZW35 169 aa4.04□□□□□ -1.76
CUX1-220ENST00000607092 BAGE2Q86Y30 109 aa4.04□□□□□ -1.76
CUX1-220ENST00000607092 JPT2Q9H910 190 aa4.04□□□□□ -1.76
CUX1-220ENST00000607092 IGHV1-24A0A0C4DH33 117 aa4.03□□□□□ -1.76
CUX1-220ENST00000607092 hDV102S1A0JD36 115 aa4.03□□□□□ -1.76
CUX1-220ENST00000607092 GRIFINA4D1Z8 144 aa4.03□□□□□ -1.76
CUX1-220ENST00000607092 FAM231BA6NCW3 169 aa4.03□□□□□ -1.76
CUX1-220ENST00000607092 F5H697 171 aa4.03□□□□□ -1.76
CUX1-220ENST00000607092 MT1HL1P0DM35 61 aa4.03□□□□□ -1.76
CUX1-220ENST00000607092 CENPWQ5EE01 88 aa4.03□□□□□ -1.76
CUX1-220ENST00000607092 SPANXN1Q5VSR9 72 aa4.03□□□□□ -1.76
CUX1-220ENST00000607092 PRR27Q6MZM9 219 aa4.03□□□□□ -1.76
CUX1-220ENST00000607092 REG3GQ6UW15 175 aa4.03□□□□□ -1.76
CUX1-220ENST00000607092 DNAJC30Q96LL9 226 aa4.03□□□□□ -1.76
CUX1-220ENST00000607092 AP1S3Q96PC3 154 aa4.03□□□□□ -1.76
CUX1-220ENST00000607092 DERL1Q9BUN8 251 aa4.03□□□□□ -1.76
CUX1-220ENST00000607092 MLST8Q9BVC4 326 aa4.03□□□□□ -1.76
CUX1-220ENST00000607092 LINC00474Q9P2X8 69 aa4.03□□□□□ -1.76
CUX1-220ENST00000607092 TGIF2-C20orf24A0A0A6YYL0 155 aa4.02□□□□□ -1.77
CUX1-220ENST00000607092 TRAV34A0A0B4J273 112 aa4.02□□□□□ -1.77
CUX1-220ENST00000607092 A0A1B0GUV1 79 aa4.02□□□□□ -1.77
CUX1-220ENST00000607092 C5orf52A6NGY3 159 aa4.02□□□□□ -1.77
CUX1-220ENST00000607092 PRSS47A8MTI9 375 aa4.02□□□□□ -1.77
CUX1-220ENST00000607092 RBX1P62877 108 aa4.02□□□□□ -1.77
CUX1-220ENST00000607092 REG3AQ06141 175 aa4.02□□□□□ -1.77
CUX1-220ENST00000607092 IQCJQ1A5X6 159 aa4.02□□□□□ -1.77
CUX1-220ENST00000607092 RASL11AQ6T310 242 aa4.02□□□□□ -1.77
CUX1-220ENST00000607092 LINC00269Q8N2A0 174 aa4.02□□□□□ -1.77
CUX1-220ENST00000607092 NEXN-AS1Q8NBZ9 246 aa4.02□□□□□ -1.77
CUX1-220ENST00000607092 PLAC8Q9NZF1 115 aa4.02□□□□□ -1.77
CUX1-220ENST00000607092 Q9UF83 564 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms