RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 NKX2-5P52952 324 aaPredicted RBP6.11□□□□□ -1.43
VRK3-224ENST00000601849 COTL1Q14019 142 aa6.11□□□□□ -1.43
VRK3-224ENST00000601849 KRTAP26-1Q6PEX3 210 aa6.11□□□□□ -1.43
VRK3-224ENST00000601849 PGLYRP4Q96LB8 373 aa6.11□□□□□ -1.43
VRK3-224ENST00000601849 PANO1I0J062 215 aa6.1□□□□□ -1.43
VRK3-224ENST00000601849 RPS10P46783 165 aaKnown RBP6.1□□□□□ -1.43
VRK3-224ENST00000601849 AMTP48728 403 aa6.1□□□□□ -1.43
VRK3-224ENST00000601849 SUMO4Q6EEV6 95 aa6.1□□□□□ -1.43
VRK3-224ENST00000601849 C20orf203Q8NBC4 194 aa6.1□□□□□ -1.43
VRK3-224ENST00000601849 OR2D3Q8NGH3 330 aa6.1□□□□□ -1.43
VRK3-224ENST00000601849 SPACA4Q8TDM5 124 aa6.1□□□□□ -1.43
VRK3-224ENST00000601849 GTSF1Q8WW33 167 aa6.1□□□□□ -1.43
VRK3-224ENST00000601849 MANBALQ9NQG1 85 aa6.1□□□□□ -1.43
VRK3-224ENST00000601849 LINC00474Q9P2X8 69 aa6.1□□□□□ -1.43
VRK3-224ENST00000601849 NDUFS6O75380 124 aaKnown RBP6.09□□□□□ -1.43
VRK3-224ENST00000601849 IFNA1P01562 189 aa6.09□□□□□ -1.43
VRK3-224ENST00000601849 AMMECR1LQ6DCA0 310 aa6.09□□□□□ -1.43
VRK3-224ENST00000601849 SMIM15Q7Z3B0 74 aa6.09□□□□□ -1.43
VRK3-224ENST00000601849 SLC51BQ86UW2 128 aa6.09□□□□□ -1.43
VRK3-224ENST00000601849 SMIM12Q96EX1 92 aa6.09□□□□□ -1.43
VRK3-224ENST00000601849 PLAC8Q9NZF1 115 aa6.09□□□□□ -1.43
VRK3-224ENST00000601849 RNF213Q63HN8 5207 aa6.09□□□□□ -1.44
VRK3-224ENST00000601849 IGLV4-60A0A075B6I1 120 aa6.08□□□□□ -1.44
VRK3-224ENST00000601849 GAGE12HA6NDE8 117 aa6.08□□□□□ -1.44
VRK3-224ENST00000601849 PHOX2AO14813 284 aa6.08□□□□□ -1.44
VRK3-224ENST00000601849 MT1HL1P0DM35 61 aa6.08□□□□□ -1.44
VRK3-224ENST00000601849 GNG4P50150 75 aa6.08□□□□□ -1.44
VRK3-224ENST00000601849 COX6A2Q02221 97 aa6.08□□□□□ -1.44
VRK3-224ENST00000601849 MAJINQ3KP22 176 aa6.08□□□□□ -1.44
VRK3-224ENST00000601849 GNG13Q9P2W3 67 aa6.08□□□□□ -1.44
VRK3-224ENST00000601849 IGKV3OR2-268A0A0C4DH90 116 aa6.07□□□□□ -1.44
VRK3-224ENST00000601849 IGLC6P0CF74 106 aa6.07□□□□□ -1.44
VRK3-224ENST00000601849 CHTF8P0CG12 524 aa6.07□□□□□ -1.44
VRK3-224ENST00000601849 NTF3P20783 257 aa6.07□□□□□ -1.44
VRK3-224ENST00000601849 TWIST1Q15672 202 aa6.07□□□□□ -1.44
VRK3-224ENST00000601849 CENPWQ5EE01 88 aa6.07□□□□□ -1.44
VRK3-224ENST00000601849 EIF5AL1Q6IS14 154 aaKnown RBP6.07□□□□□ -1.44
VRK3-224ENST00000601849 RNASEKQ6P5S7 137 aaKnown RBP6.07□□□□□ -1.44
VRK3-224ENST00000601849 REG3GQ6UW15 175 aa6.07□□□□□ -1.44
VRK3-224ENST00000601849 STPG4Q8N801 248 aa6.07□□□□□ -1.44
VRK3-224ENST00000601849 BTF3L4Q96K17 158 aa6.07□□□□□ -1.44
VRK3-224ENST00000601849 LRP2P98164 4655 aa6.06□□□□□ -1.44
VRK3-224ENST00000601849 IGKV2-24A0A0C4DH68 120 aa6.06□□□□□ -1.44
VRK3-224ENST00000601849 H7C423 109 aa6.06□□□□□ -1.44
VRK3-224ENST00000601849 PDE6DO43924 150 aa6.06□□□□□ -1.44
VRK3-224ENST00000601849 NCR2O95944 276 aa6.06□□□□□ -1.44
VRK3-224ENST00000601849 SLPIP03973 132 aa6.06□□□□□ -1.44
VRK3-224ENST00000601849 CCL20P78556 96 aa6.06□□□□□ -1.44
VRK3-224ENST00000601849 TEX261Q6UWH6 196 aa6.06□□□□□ -1.44
VRK3-224ENST00000601849 LYZL1Q6UWQ5 148 aa6.06□□□□□ -1.44
VRK3-224ENST00000601849 TMEM101Q96IK0 257 aa6.06□□□□□ -1.44
VRK3-224ENST00000601849 LINC01600Q96MT4 127 aa6.06□□□□□ -1.44
VRK3-224ENST00000601849 TNXBP22105 4242 aa6.05□□□□□ -1.44
VRK3-224ENST00000601849 HIGD2BQ4VC39 106 aa6.05□□□□□ -1.44
VRK3-224ENST00000601849 SPINK6Q6UWN8 80 aa6.05□□□□□ -1.44
VRK3-224ENST00000601849 LYPD6BQ8NI32 183 aa6.05□□□□□ -1.44
VRK3-224ENST00000601849 CHCHD10Q8WYQ3 142 aaPredicted RBP6.05□□□□□ -1.44
VRK3-224ENST00000601849 C11orf52Q96A22 123 aa6.05□□□□□ -1.44
VRK3-224ENST00000601849 MED9Q9NWA0 146 aa6.05□□□□□ -1.44
VRK3-224ENST00000601849 TRAV1-1A0A0B4J248 108 aa6.04□□□□□ -1.44
VRK3-224ENST00000601849 C19orf71A6NCJ1 209 aa6.04□□□□□ -1.44
VRK3-224ENST00000601849 APCSP02743 223 aa6.04□□□□□ -1.44
VRK3-224ENST00000601849 MEF2BQ02080 365 aaPredicted RBP6.04□□□□□ -1.44
VRK3-224ENST00000601849 C15orf56Q8N910 161 aa6.04□□□□□ -1.44
VRK3-224ENST00000601849 PRSS3P2Q8NHM4 247 aa6.04□□□□□ -1.44
VRK3-224ENST00000601849 FAM210AQ96ND0 272 aa6.04□□□□□ -1.44
VRK3-224ENST00000601849 GFRA4Q9GZZ7 299 aa6.04□□□□□ -1.44
VRK3-224ENST00000601849 RAB19A4D1S5 217 aa6.03□□□□□ -1.44
VRK3-224ENST00000601849 ZNF561-AS1K7EIQ3 104 aa6.03□□□□□ -1.44
VRK3-224ENST00000601849 ZNF25P17030 456 aaPredicted RBP6.03□□□□□ -1.44
VRK3-224ENST00000601849 PMCHP20382 165 aa6.03□□□□□ -1.44
VRK3-224ENST00000601849 PRR3P79522 188 aaKnown RBP6.03□□□□□ -1.44
VRK3-224ENST00000601849 GVQW2A0A096LPI5 108 aaPredicted RBP6.02□□□□□ -1.45
VRK3-224ENST00000601849 IGHV1-58A0A0C4DH39 117 aa6.02□□□□□ -1.45
VRK3-224ENST00000601849 A0A0J9YXV3 536 aa6.02□□□□□ -1.45
VRK3-224ENST00000601849 TAGLN2P37802 199 aaKnown RBP6.02□□□□□ -1.45
VRK3-224ENST00000601849 SS18Q15532 418 aa6.02□□□□□ -1.45
VRK3-224ENST00000601849 ALKAL2Q6UX46 152 aa6.02□□□□□ -1.45
VRK3-224ENST00000601849 Q6ZRP5 223 aa6.02□□□□□ -1.45
VRK3-224ENST00000601849 GATD1Q8NB37 220 aa6.02□□□□□ -1.45
VRK3-224ENST00000601849 NUDT10Q8NFP7 164 aa6.02□□□□□ -1.45
VRK3-224ENST00000601849 OR5A1Q8NGJ0 315 aa6.02□□□□□ -1.45
VRK3-224ENST00000601849 ISOC2Q96AB3 205 aa6.02□□□□□ -1.45
VRK3-224ENST00000601849 NUDT11Q96G61 164 aa6.02□□□□□ -1.45
VRK3-224ENST00000601849 I3L3M4 83 aa6.01□□□□□ -1.45
VRK3-224ENST00000601849 FGF6P10767 208 aa6.01□□□□□ -1.45
VRK3-224ENST00000601849 XCL1P47992 114 aa6.01□□□□□ -1.45
VRK3-224ENST00000601849 SMAGPQ0VAQ4 97 aa6.01□□□□□ -1.45
VRK3-224ENST00000601849 BORCS7Q96B45 105 aa6.01□□□□□ -1.45
VRK3-224ENST00000601849 RPP21Q9H633 154 aaKnown RBP6.01□□□□□ -1.45
VRK3-224ENST00000601849 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6□□□□□ -1.45
VRK3-224ENST00000601849 IGKV2-29A2NJV5 120 aaPredicted RBP6□□□□□ -1.45
VRK3-224ENST00000601849 SDHAF1A6NFY7 115 aa6□□□□□ -1.45
VRK3-224ENST00000601849 CTRLP40313 264 aa6□□□□□ -1.45
VRK3-224ENST00000601849 CARD19Q96LW7 228 aa6□□□□□ -1.45
VRK3-224ENST00000601849 CNFNQ9BYD5 112 aa6□□□□□ -1.45
VRK3-224ENST00000601849 A0A096LNI7 61 aa5.99□□□□□ -1.45
VRK3-224ENST00000601849 TRAV26-2A0A0B4J265 109 aa5.99□□□□□ -1.45
VRK3-224ENST00000601849 LINC00959A0A1B0GUT2 108 aa5.99□□□□□ -1.45
VRK3-224ENST00000601849 CCL25O15444 150 aa5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms