RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.98□□□□□ -0.33
SHKBP1-221ENST00000599833 CHCHD5Q9BSY4 110 aa12.98□□□□□ -0.33
SHKBP1-221ENST00000599833 TMEM70Q9BUB7 260 aa12.98□□□□□ -0.33
SHKBP1-221ENST00000599833 KLK12Q9UKR0 248 aa12.98□□□□□ -0.33
SHKBP1-221ENST00000599833 A0A087WX48 190 aa12.97□□□□□ -0.33
SHKBP1-221ENST00000599833 RBX1P62877 108 aa12.97□□□□□ -0.33
SHKBP1-221ENST00000599833 GAGE6Q13070 117 aa12.97□□□□□ -0.33
SHKBP1-221ENST00000599833 ATP5L2Q7Z4Y8 100 aa12.97□□□□□ -0.33
SHKBP1-221ENST00000599833 CARHSP1Q9Y2V2 147 aaKnown RBP12.97□□□□□ -0.33
SHKBP1-221ENST00000599833 PRR34Q9NV39 138 aa12.96□□□□□ -0.33
SHKBP1-221ENST00000599833 URGCP-MRPS24S4R325 110 aa12.96□□□□□ -0.33
SHKBP1-221ENST00000599833 TRAV8-3A0A0A6YYJ7 113 aa12.95□□□□□ -0.34
SHKBP1-221ENST00000599833 TRBV27A0A0K0K1C4 114 aa12.95□□□□□ -0.34
SHKBP1-221ENST00000599833 TMEM262E9PQX1 116 aa12.95□□□□□ -0.34
SHKBP1-221ENST00000599833 TSHBP01222 138 aa12.95□□□□□ -0.34
SHKBP1-221ENST00000599833 COTL1Q14019 142 aa12.95□□□□□ -0.34
SHKBP1-221ENST00000599833 WFDC2Q14508 124 aa12.95□□□□□ -0.34
SHKBP1-221ENST00000599833 KCNIP4Q6PIL6 250 aa12.95□□□□□ -0.34
SHKBP1-221ENST00000599833 SPATA12Q7Z6I5 190 aa12.95□□□□□ -0.34
SHKBP1-221ENST00000599833 C20orf203Q8NBC4 194 aa12.95□□□□□ -0.34
SHKBP1-221ENST00000599833 TMEM243Q9BU79 118 aa12.95□□□□□ -0.34
SHKBP1-221ENST00000599833 IGLV4-60A0A075B6I1 120 aa12.94□□□□□ -0.34
SHKBP1-221ENST00000599833 ST20Q9HBF5 79 aa12.94□□□□□ -0.34
SHKBP1-221ENST00000599833 TRBV24-1A0A075B6N3 115 aa12.93□□□□□ -0.34
SHKBP1-221ENST00000599833 A0A1B0GUV1 79 aa12.93□□□□□ -0.34
SHKBP1-221ENST00000599833 I3L3M4 83 aa12.93□□□□□ -0.34
SHKBP1-221ENST00000599833 ESDP10768 282 aa12.93□□□□□ -0.34
SHKBP1-221ENST00000599833 PKIAP61925 76 aa12.93□□□□□ -0.34
SHKBP1-221ENST00000599833 IMMP2LQ96T52 175 aa12.93□□□□□ -0.34
SHKBP1-221ENST00000599833 FUSP35637 526 aaKnown RBP eCLIP12.92□□□□□ -0.34
SHKBP1-221ENST00000599833 AMTP48728 403 aa12.92□□□□□ -0.34
SHKBP1-221ENST00000599833 ELOBQ15370 118 aa12.92□□□□□ -0.34
SHKBP1-221ENST00000599833 KRTAP26-1Q6PEX3 210 aa12.92□□□□□ -0.34
SHKBP1-221ENST00000599833 UBE2WQ96B02 151 aa12.92□□□□□ -0.34
SHKBP1-221ENST00000599833 S100A8P05109 93 aa12.91□□□□□ -0.34
SHKBP1-221ENST00000599833 CTDSP1Q9GZU7 261 aa12.91□□□□□ -0.34
SHKBP1-221ENST00000599833 TMEM242Q9NWH2 141 aa12.91□□□□□ -0.34
SHKBP1-221ENST00000599833 D6R8Y8 96 aa12.9□□□□□ -0.34
SHKBP1-221ENST00000599833 ANGP03950 147 aaKnown RBP12.9□□□□□ -0.34
SHKBP1-221ENST00000599833 SUMO2P61956 95 aaKnown RBP12.9□□□□□ -0.34
SHKBP1-221ENST00000599833 BTF3L4Q96K17 158 aa12.9□□□□□ -0.34
SHKBP1-221ENST00000599833 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.89□□□□□ -0.35
SHKBP1-221ENST00000599833 IGKV2-29A2NJV5 120 aaPredicted RBP12.89□□□□□ -0.35
SHKBP1-221ENST00000599833 C7orf77A4D0Y5 90 aa12.89□□□□□ -0.35
SHKBP1-221ENST00000599833 APCSP02743 223 aa12.89□□□□□ -0.35
SHKBP1-221ENST00000599833 PMCHP20382 165 aa12.89□□□□□ -0.35
SHKBP1-221ENST00000599833 RPL32P62910 135 aaKnown RBP12.89□□□□□ -0.35
SHKBP1-221ENST00000599833 LINC00269Q8N2A0 174 aa12.89□□□□□ -0.35
SHKBP1-221ENST00000599833 TM2D2Q9BX73 214 aa12.89□□□□□ -0.35
SHKBP1-221ENST00000599833 TNFRSF6BO95407 300 aa12.88□□□□□ -0.35
SHKBP1-221ENST00000599833 NPYP01303 97 aa12.88□□□□□ -0.35
SHKBP1-221ENST00000599833 CLRN3Q8NCR9 226 aa12.88□□□□□ -0.35
SHKBP1-221ENST00000599833 C20orf78Q9BR46 151 aa12.88□□□□□ -0.35
SHKBP1-221ENST00000599833 PSCAO43653 123 aa12.87□□□□□ -0.35
SHKBP1-221ENST00000599833 PPP1R17O96001 155 aa12.87□□□□□ -0.35
SHKBP1-221ENST00000599833 CKS2P33552 79 aa12.87□□□□□ -0.35
SHKBP1-221ENST00000599833 Q0VG73 95 aa12.87□□□□□ -0.35
SHKBP1-221ENST00000599833 CLPSL2Q6UWE3 100 aa12.87□□□□□ -0.35
SHKBP1-221ENST00000599833 IGKV2D-24A0A075B6R9 120 aa12.86□□□□□ -0.35
SHKBP1-221ENST00000599833 C16orf90A8MZG2 172 aa12.86□□□□□ -0.35
SHKBP1-221ENST00000599833 H7C423 109 aa12.86□□□□□ -0.35
SHKBP1-221ENST00000599833 VCYO14598 125 aa12.86□□□□□ -0.35
SHKBP1-221ENST00000599833 TMEM136Q6ZRR5 245 aa12.86□□□□□ -0.35
SHKBP1-221ENST00000599833 Q8N814 137 aa12.86□□□□□ -0.35
SHKBP1-221ENST00000599833 PHOX2AO14813 284 aa12.85□□□□□ -0.35
SHKBP1-221ENST00000599833 PPBPP02775 128 aa12.85□□□□□ -0.35
SHKBP1-221ENST00000599833 REG3AQ06141 175 aa12.85□□□□□ -0.35
SHKBP1-221ENST00000599833 MIAQ16674 131 aa12.85□□□□□ -0.35
SHKBP1-221ENST00000599833 VPS13BQ7Z7G8 4022 aa12.84□□□□□ -0.35
SHKBP1-221ENST00000599833 TRAV9-1A0A075B6T8 112 aa12.84□□□□□ -0.35
SHKBP1-221ENST00000599833 FGF6P10767 208 aa12.84□□□□□ -0.35
SHKBP1-221ENST00000599833 RHEBQ15382 184 aa12.84□□□□□ -0.35
SHKBP1-221ENST00000599833 BAALCQ8WXS3 180 aa12.84□□□□□ -0.35
SHKBP1-221ENST00000599833 SMIM2Q9BVW6 85 aa12.84□□□□□ -0.35
SHKBP1-221ENST00000599833 COX11Q9Y6N1 276 aa12.84□□□□□ -0.35
SHKBP1-221ENST00000599833 ABCA13Q86UQ4 5058 aa12.84□□□□□ -0.35
SHKBP1-221ENST00000599833 PRSS47A8MTI9 375 aa12.83□□□□□ -0.36
SHKBP1-221ENST00000599833 UBE2L6O14933 153 aa12.83□□□□□ -0.36
SHKBP1-221ENST00000599833 CRPP02741 224 aa12.83□□□□□ -0.36
SHKBP1-221ENST00000599833 MRPL52Q86TS9 123 aaKnown RBP12.83□□□□□ -0.36
SHKBP1-221ENST00000599833 ORMDL3Q8N138 153 aa12.83□□□□□ -0.36
SHKBP1-221ENST00000599833 RMI2Q96E14 147 aa12.83□□□□□ -0.36
SHKBP1-221ENST00000599833 PGPEP1Q9NXJ5 209 aa12.83□□□□□ -0.36
SHKBP1-221ENST00000599833 FAT1Q14517 4588 aa12.83□□□□□ -0.36
SHKBP1-221ENST00000599833 LECT2O14960 151 aa12.82□□□□□ -0.36
SHKBP1-221ENST00000599833 CDPF1Q6NVV7 123 aa12.82□□□□□ -0.36
SHKBP1-221ENST00000599833 PRELID3AQ96N28 172 aa12.82□□□□□ -0.36
SHKBP1-221ENST00000599833 C1orf43Q9BWL3 253 aa12.82□□□□□ -0.36
SHKBP1-221ENST00000599833 PCLOQ9Y6V0 5065 aa12.81□□□□□ -0.36
SHKBP1-221ENST00000599833 KRTAP17-1Q9BYP8 105 aa12.81□□□□□ -0.36
SHKBP1-221ENST00000599833 EREGO14944 169 aa12.8□□□□□ -0.36
SHKBP1-221ENST00000599833 ZNF25P17030 456 aaPredicted RBP12.8□□□□□ -0.36
SHKBP1-221ENST00000599833 FAM104AQ969W3 186 aa12.8□□□□□ -0.36
SHKBP1-221ENST00000599833 RPS10P5Q9NQ39 176 aa12.8□□□□□ -0.36
SHKBP1-221ENST00000599833 APOC3P02656 99 aa12.79□□□□□ -0.36
SHKBP1-221ENST00000599833 KIR2DL4Q99706 377 aa12.79□□□□□ -0.36
SHKBP1-221ENST00000599833 UBE2D4Q9Y2X8 147 aa12.79□□□□□ -0.36
SHKBP1-221ENST00000599833 IGLV10-54A0A075B6I4 117 aa12.78□□□□□ -0.36
SHKBP1-221ENST00000599833 KRTAP10-1P60331 282 aa12.78□□□□□ -0.36
SHKBP1-221ENST00000599833 NTN5Q8WTR8 489 aaPredicted RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 117.6 ms